##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *


class Graphmap(MakefilePackage):
    """A highly sensitive and accurate mapper for long, error-prone reads"""

    homepage = "https://github.com/isovic/graphmap"
    git      = "https://github.com/isovic/graphmap.git"

    version('0.3.0', commit='eb8c75d68b03be95464318afa69b645a59f8f6b7')

    def edit(self, spec, prefix):
        mkdirp(prefix.bin)
        makefile = FileFilter('Makefile')
        makefile.filter('/usr/bin/graphmap', prefix.bin.graphmap)

    def build(self, spec, prefix):
        make('modules')
        make()