# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RAcgh(RPackage):
    """Classes and functions for Array Comparative Genomic Hybridization data..

       Functions for reading aCGH data from image analysis output files and
       clone information files, creation of aCGH S3 objects for storing these
       data. Basic methods for accessing/replacing, subsetting, printing and
       plotting aCGH objects."""

    homepage = "https://bioconductor.org/packages/aCGH"
    git      = "https://git.bioconductor.org/packages/aCGH.git"

    version('1.62.0', commit='3b68b69c3380fa3b66dfb060457628a4a9c22d4f')
    version('1.60.0', commit='ae581758aaa1755448f0cfef5adfb30d1e820b21')
    version('1.58.0', commit='2decc79a21bff5a14d708cdc654e351515b20d3e')
    version('1.56.0', commit='f3531ec99fc181044bdcb6a01c9976029efb6235')
    version('1.54.0', commit='be2ed339449f55c8d218e10c435e4ad356683693')

    depends_on('r@2.10:', type=('build', 'run'))
    depends_on('r-cluster', type=('build', 'run'))
    depends_on('r-survival', type=('build', 'run'))
    depends_on('r-multtest', type=('build', 'run'))
    depends_on('r-biobase', type=('build', 'run'))