# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack import * class RSctransform(RPackage): """A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 for more details.""" homepage = "https://github.com/ChristophH/sctransform" url = "https://cloud.r-project.org/src/contrib/sctransform_0.2.0.tar.gz" list_url = "https://cloud.r-project.org/src/contrib/Archive/sctransform" version('0.2.0', sha256='d7f4c7958693823454f1426b23b0e1e9c207ad61a7a228602a1885a1318eb3e4') depends_on('r@3.0.2:', type=('build', 'run')) depends_on('r-mass', type=('build', 'run')) depends_on('r-matrix', type=('build', 'run')) depends_on('r-future', type=('build', 'run')) depends_on('r-future-apply', type=('build', 'run')) depends_on('r-ggplot2', type=('build', 'run')) depends_on('r-reshape2', type=('build', 'run')) depends_on('r-gridextra', type=('build', 'run')) depends_on('r-rcpp@0.11.0:', type=('build', 'run')) depends_on('r-rcppeigen', type=('build', 'run'))