# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class SwapAssembler(MakefilePackage):
    """A scalable and fully parallelized genome assembler."""

    homepage = "https://sourceforge.net/projects/swapassembler/"
    url      = "https://sourceforge.net/projects/swapassembler/files/SWAP_Assembler-0.4.tar.bz2/download"

    version('0.4', sha256='45632e25578aacfbacd76df9697cbc798e09ac92284d9c9c07be15e0eb348e0d')

    depends_on('mpich')

    def edit(self, spec, prefix):
        makefile = FileFilter('Makefile')
        makefile.filter('$(CC) -O2', '$(CC) -pthread -O2', string=True)

    def install(self, spec, prefix):
        install_tree('.', prefix.bin)