# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack import * class Microbiomeutil(MakefilePackage, SourceforgePackage): """Microbiome analysis utilities""" homepage = "http://microbiomeutil.sourceforge.net/" sourceforge_mirror_path = "microbiomeutil/microbiomeutil-r20110519.tgz" version('20110519', sha256='9233de80ea57bfb9e9371cbe7e3bfad2d4a51168fddaf60fa144c4046c80d823') depends_on('perl', type=('build', 'run')) depends_on('blast-plus') depends_on('cdbfasta') def install(self, spec, prefix): install_tree('ChimeraSlayer', prefix.ChimeraSlayer) install_tree('NAST-iEr', join_path(prefix, 'NAST-iEr')) install_tree('TreeChopper', prefix.TreeChopper) install_tree('WigeoN', prefix.WigeoN) install_tree('docs', prefix.docs) install_tree('RESOURCES', prefix.resources) install_tree('AmosCmp16Spipeline', prefix.AmosCmp16Spipeline) def setup_run_environment(self, env): env.prepend_path('PATH', self.prefix.ChimeraSlayer) env.prepend_path('PATH', join_path(self.prefix, 'NAST-iEr')) env.prepend_path('PATH', self.prefix.TreeChopper) env.prepend_path('PATH', self.prefix.WigeoN)