00f91ab22b
This commit either removes remaining md5 checksums, or it replaces them with sha256 checksums verified by fetching over https.
28 lines
1010 B
Python
28 lines
1010 B
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyPysam(PythonPackage):
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"""A python module for reading, manipulating and writing genomic data
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sets."""
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homepage = "https://pypi.python.org/pypi/pysam"
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url = "https://github.com/pysam-developers/pysam/archive/v0.14.1.tar.gz"
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version('0.15.2', sha256='8cb3dd70f0d825086ac059ec2445ebd2ec5f14af73e7f1f4bd358966aaee5ed3')
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version('0.15.1', sha256='12221285af17e32b8f3fed033f90c6177a798afe41420eb5c3352d4e18ee12ed')
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version('0.14.1', sha256='d2bb40cd083c1357768e4683377f03471d160cfe8421136630bfa47f5adb3219')
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depends_on('py-setuptools', type='build')
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depends_on('py-cython@0.21:', type='build')
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depends_on('curl')
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depends_on('bcftools')
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depends_on('htslib')
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depends_on('samtools')
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depends_on('htslib@:1.6', when='@:0.13')
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