b25f27d442
* py-checkm-genome: Add version 1.0.13 * py-checkm-genome: Add missing py-backports-functools-lru-cache dependency * py-checkm-genome: Fix missing whitespace
29 lines
1.2 KiB
Python
29 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class PyCheckmGenome(PythonPackage):
|
|
"""Assess the quality of microbial genomes recovered from isolates, single
|
|
cells, and metagenomes"""
|
|
|
|
homepage = "https://ecogenomics.github.io/CheckM"
|
|
url = "https://pypi.io/packages/source/c/checkm-genome/checkm-genome-1.0.11.tar.gz"
|
|
|
|
version('1.0.13', sha256='ffb7e4966c0fac07c7e6e7db6f6eb5b48587fa83987f8a68efbaff2afb7da82e')
|
|
version('1.0.11', '3058546ec324e2420cf72f0d2576114b')
|
|
|
|
depends_on('hmmer@3.1b1:', type=('build', 'run'))
|
|
depends_on('pplacer', type=('build', 'run'))
|
|
depends_on('prodigal@2.6.1:', type=('build', 'run'))
|
|
depends_on('python@2.7.0:2.7.999', type=('build', 'run'))
|
|
depends_on('py-backports-functools-lru-cache', type=('build', 'run'))
|
|
depends_on('py-numpy@1.8.0:', type=('build', 'run'))
|
|
depends_on('py-scipy@0.9.0:', type=('build', 'run'))
|
|
depends_on('py-matplotlib@1.3.1:2.2.3', type=('build', 'run'))
|
|
depends_on('py-pysam@0.8.3:', type=('build', 'run'))
|
|
depends_on('py-dendropy@4.0.0:', type=('build', 'run'))
|