042fcc3575
* Add bioc attribute to r-do-db
* add version 1.38.1 to bioconductor package r-annotationforge
* add version 1.30.4 to bioconductor package r-biocparallel
* add version 2.64.1 to bioconductor package r-biostrings
* add version 4.4.4 to bioconductor package r-clusterprofiler
* add version 2.12.1 to bioconductor package r-complexheatmap
* add version 1.18.1 to bioconductor package r-delayedmatrixstats
* add version 3.22.1 to bioconductor package r-dose
* add version 3.38.4 to bioconductor package r-edger
* add version 1.16.2 to bioconductor package r-enrichplot
* add version 2.20.2 to bioconductor package r-ensembldb
* add version 1.32.4 to bioconductor package r-genomeinfodb
* add version 1.32.1 to bioconductor package r-genomicalignments
* add version 1.48.4 to bioconductor package r-genomicfeatures
* add version 1.44.1 to bioconductor package r-ggbio
* add version 3.4.4 to bioconductor package r-ggtree
* add version 1.24.2 to bioconductor package r-hdf5array
* add version 2.30.1 to bioconductor package r-iranges
* add version 1.36.3 to bioconductor package r-keggrest
* add version 3.52.4 to bioconductor package r-limma
* add version 1.8.1 to bioconductor package r-matrixgenerics
* update r-org-hs-eg-db
* add version 1.38.1 to bioconductor package r-organismdbi
* add version 1.36.1 to bioconductor package r-pathview
* add version 1.56.1 to bioconductor package r-rtracklayer
* add version 1.4.1 to bioconductor package r-scaledmatrix
* add version 1.24.1 to bioconductor package r-scran
* add version 1.6.3 to bioconductor package r-scuttle
* add version 1.18.1 to bioconductor package r-singlecellexperiment
* add version 1.20.2 to bioconductor package r-treeio
* Revert "Add bioc attribute to r-do-db"
This reverts commit 36be5c6072.
* Fix quotes on versions
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
53 lines
2.9 KiB
Python
53 lines
2.9 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class RDelayedmatrixstats(RPackage):
|
|
"""Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects.
|
|
|
|
A port of the 'matrixStats' API for use with DelayedMatrix objects from
|
|
the 'DelayedArray' package. High-performing functions operating on rows
|
|
and columns of DelayedMatrix objects, e.g. col / rowMedians(), col /
|
|
rowRanks(), and col / rowSds(). Functions optimized per data type and
|
|
for subsetted calculations such that both memory usage and processing
|
|
time is minimized."""
|
|
|
|
bioc = "DelayedMatrixStats"
|
|
|
|
version("1.18.1", commit="9c4658d11fc20b7d88e05b9c52140c2ca8a65768")
|
|
version("1.18.0", commit="50c9aab259b6e8f68abf44b78122662a41c8bf47")
|
|
version("1.16.0", commit="d44a3d765769cb022193428a77af25bf19916be7")
|
|
version("1.12.3", commit="2b3091dfa9b3bab914e3a4157182063714ba86ae")
|
|
version("1.6.1", commit="4378d1898a403305a94b122c4f36d1215fa7708d")
|
|
version("1.4.0", commit="eb5b390ef99651fe87a346848f807de95afe8971")
|
|
version("1.2.0", commit="de868e730be6280dfad41a280ab09f4d3083c9ac")
|
|
version("1.0.3", commit="e29a3444980ff727c5b12286884b06dfaebf5b5b")
|
|
|
|
depends_on("r-matrixgenerics", type=("build", "run"), when="@1.12.2:")
|
|
depends_on("r-matrixgenerics@1.5.3:", type=("build", "run"), when="@1.16.0:")
|
|
depends_on("r-delayedarray", type=("build", "run"))
|
|
depends_on("r-delayedarray@0.5.27:", type=("build", "run"), when="@1.2.0:")
|
|
depends_on("r-delayedarray@0.7.37:", type=("build", "run"), when="@1.4.0:")
|
|
depends_on("r-delayedarray@0.9.8:", type=("build", "run"), when="@1.6.1:")
|
|
depends_on("r-delayedarray@0.15.3:", type=("build", "run"), when="@1.12.2:")
|
|
depends_on("r-delayedarray@0.17.6:", type=("build", "run"), when="@1.16.0:")
|
|
depends_on("r-matrixstats@0.53.1:", type=("build", "run"))
|
|
depends_on("r-matrixstats@0.55.0:", type=("build", "run"), when="@1.6.1:")
|
|
depends_on("r-matrixstats@0.56.0:", type=("build", "run"), when="@1.12.2:")
|
|
depends_on("r-matrixstats@0.60.0:", type=("build", "run"), when="@1.16.0:")
|
|
depends_on("r-sparsematrixstats", type=("build", "run"), when="@1.12.2:")
|
|
depends_on("r-matrix", type=("build", "run"))
|
|
depends_on("r-matrix@1.5.0:", type=("build", "run"), when="@1.18.1:")
|
|
depends_on("r-s4vectors", type=("build", "run"))
|
|
depends_on("r-s4vectors@0.17.5:", type=("build", "run"), when="@1.2.0:")
|
|
depends_on("r-iranges", type=("build", "run"))
|
|
depends_on("r-iranges@2.25.10:", type=("build", "run"), when="@1.16.0:")
|
|
|
|
depends_on("r-hdf5array@1.7.10:", type=("build", "run"), when="@1.4.0:1.12.3")
|
|
depends_on("r-hdf5array@1.17.2:", type=("build", "run"), when="@1.12.2:1.12.3")
|
|
depends_on("r-biocparallel", type=("build", "run"), when="@1.4.0:1.12.3")
|