eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
37 lines
1.4 KiB
Python
37 lines
1.4 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyPyani(PythonPackage):
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"""pyani is a Python3 module that provides support for calculating
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average nucleotide identity (ANI) and related measures for whole genome
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comparisons, and rendering relevant graphical summary output. Where
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available, it takes advantage of multicore systems, and can integrate
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with SGE/OGE-type job schedulers for the sequence comparisons."""
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homepage = "http://widdowquinn.github.io/pyani"
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url = "https://pypi.io/packages/source/p/pyani/pyani-0.2.7.tar.gz"
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version('0.2.7', '239ba630d375a81c35b7c60fb9bec6fa')
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version('0.2.6', 'd5524b9a3c62c36063ed474ea95785c9')
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depends_on('python@3.5:')
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depends_on('py-setuptools', type='build')
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depends_on('py-matplotlib', type=('build', 'run'))
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depends_on('py-seaborn', type=('build', 'run'))
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# Required for ANI analysis
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depends_on('py-biopython', type=('build', 'run'))
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depends_on('py-pandas', type=('build', 'run'))
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depends_on('py-scipy', type=('build', 'run'))
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# Required for ANIb analysis
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depends_on('blast-plus~python', type='run')
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# Required for ANIm analysis
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depends_on('mummer', type='run')
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