63 lines
2.5 KiB
Python
63 lines
2.5 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import distutils.dir_util
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class Mrtrix3(Package):
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"""MRtrix provides a set of tools to perform various advanced diffusion MRI
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analyses, including constrained spherical deconvolution (CSD),
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probabilistic tractography, track-density imaging, and apparent fibre
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density."""
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homepage = "http://www.mrtrix.org/"
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url = "https://github.com/MRtrix3/mrtrix3"
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version('2017-09-25', commit='72aca89e3d38c9d9e0c47104d0fb5bd2cbdb536d',
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git='https://github.com/MRtrix3/mrtrix3.git')
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depends_on('python@2.7:', type=('build', 'run'))
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depends_on('py-numpy', type=('build', 'run'))
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depends_on('mesa-glu')
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depends_on('qt+opengl@4.7:')
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depends_on('eigen')
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depends_on('zlib')
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depends_on('libtiff')
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depends_on('fftw')
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conflicts('%gcc@7:', when='@2017-09-25') # MRtrix3/mrtrix3#1041
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def install(self, spec, prefix):
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configure = Executable('./configure')
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build = Executable('./build')
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configure()
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build()
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# install_tree('.', prefix) does not work since the prefix
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# directory already exists by this point
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distutils.dir_util.copy_tree('.', prefix)
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def setup_environment(self, spac_env, run_env):
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run_env.prepend_path('PATH', self.prefix)
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