spack

History

t-karatsu 06042ec7ec augustus: Set compile commands for each compiler and Fix for using 'boost' on Spack (#13975 ) * augustus: Set compile commands for each compiler and Fix for using 'boost' on Spack * fix for flake8 * delete 'string' args * Fix args of filter_file func * Fix args of other filter_file func		2019-12-06 12:39:23 -06:00
..
abinit
abyss
accfft	accfft: fix narrowing error. (#13909 )	2019-11-27 10:15:22 -06:00
ace
ack	ack: Fix install modifying download cache (#13836 )	2019-11-24 17:33:49 -06:00
activeharmony
acts-core	ACTS: added version v0.11.1 (#13910 )	2019-11-27 15:18:49 +01:00
adept-utils
adiak
adios
adios2
adlbx
adol-c
aegean
aida
alan
albany
albert
alglib
allpaths-lg
alquimia	xsdk@0.5.0 (#13682 )	2019-11-14 16:36:51 -06:00
alsa-lib
aluminum	Updated versions numbers for Aluminum and Hydrogen. (#13814 )	2019-11-20 19:04:01 -07:00
amber	amber: Improved package.py and added version 18 (#13945 )	2019-12-02 16:01:14 -06:00
amg
amg2013
aml
amp
ampliconnoise	ampliconnoise: Change return type of function. (#13766 )	2019-11-20 16:03:51 -07:00
amrex
amrvis	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
andi
angsd	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
ant
antlr
ants	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
aoflagger
aom
ape
aperture-photometry
apex
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
arborx
archer
argobots	argobots: consistently use 'master' (#13965 )	2019-12-03 12:09:15 -06:00
argp-standalone
argtable
aria2
arm-forge
armadillo
arpack-ng
arrow
asagi
ascent	update to add ascent 0.5.0 release (#13709 )	2019-11-17 12:36:14 -07:00
asciidoc
asciidoctor
aspa
aspcud
aspect	Add version 2.1.0 to 'aspect' package (#13830 )	2019-11-27 20:04:00 -06:00
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
assimp
astra
astral	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
astyle
at-spi2-atk
at-spi2-core	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
athena	athena, mvapich2, spectrum-mpi: use new API to setup environment (#13677 )	2019-11-12 11:44:12 -06:00
atk	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
atlas
atom-dft
atompaw
atop
attr
augustus	augustus: Set compile commands for each compiler and Fix for using 'boost' on Spack (#13975 )	2019-12-06 12:39:23 -06:00
autoconf
autodock-vina
autofact
autogen
automaded
automake
awscli	Mark py-argparse dependency everywhere with ^python@:2.6 (#13928 )	2019-11-30 13:07:14 -06:00
axel
axl
bam-readcount
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
bbcp
bbmap	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast1
beast2	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
beast-tracer
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
biobloom
biopieces
bismark
bison	Mark conflicts between newer packages and Intel 14 compilers (#13729 )	2019-11-14 16:27:36 -06:00
bitmap
blasr	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
blasr-libcpp	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
blast2go
blast-legacy
blast-plus
blat	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
blaze
blis
bliss
blitz
blktrace	add new package : blktrace (#13872 )	2019-11-26 12:19:01 -06:00
bmake
bmi
bml
bohrium	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
bolt	update Argobots and BOLT (#13765 )	2019-11-20 19:04:46 -07:00
bookleaf-cpp
boost	BLD: enforce C++11 std for boost + xl_r (#13829 )	2019-11-27 23:08:54 -06:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite	bpp-suite: Clarify 'isinf' function's namespace. (#13777 )	2019-11-20 15:52:44 -07:00
bracken
braker	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
branson
breakdancer
breseq	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
bridger
brigand
brotli
bsseeker2
bucky
bumpversion
busco
busybox	add new package : busybox@1.31.1 (#13871 )	2019-11-26 12:19:16 -06:00
butter
butterflypack	Update ButterflyPACK and STRUMPACK (#13661 )	2019-11-11 12:24:13 -06:00
bwa
bwtool
byobu
bzip2
c-ares	Add c-ares 1.15.0 (#13809 )	2019-11-20 15:20:08 -07:00
c-blosc
c-blosc2
c-lime
cabana
caffe
cairo
cairomm
caliper	Add Caliper v2.2.0 and v2.1.1 (#13723 )	2019-11-13 18:11:09 -06:00
callpath
camellia
camx
candle-benchmarks
cantera	fix_cantera_installation (#13962 )	2019-12-03 10:33:27 -06:00
canu
cap3
capstone
cardioid
casacore
cask
casper	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
catalyst	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
catch2
cbench	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
cblas
cbtf	cbtf: add rpcsvc-proto and libtirpc dependency. (#13798 )	2019-11-30 13:08:24 -06:00
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell	cbtf-krell: add rpcsvc-proto and libtirpc dependency. (#13800 )	2019-11-21 11:38:09 -07:00
cbtf-lanl
ccache
ccfits
ccs-qcd
cctools	cctools: fix python related error. (#13802 )	2019-11-25 12:57:09 -06:00
cdbfasta
cdd
cddlib
cdecimal
cdhit	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
cdo	new CDO release 1.9.8 (#13674 )	2019-11-11 12:52:06 -06:00
ceed	Ceed: Added required version (#14006 )	2019-12-06 12:38:00 -06:00
cereal
ceres-solver
cfitsio
cgal
cgdb
cgm
cgns
channelflow
chapel
charliecloud
charmpp	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
chatterbug
check
chgcentre
chill	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
chlorop	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
chombo
chrpath
cinch	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
circos
cistem
citcoms	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
cityhash
clamav
clamr
clapack
clara	Added package for Clara command line parser (#13763 )	2019-11-20 00:12:43 -07:00
claw
cleaveland4
cleverleaf
clfft
clhep
clingo
cln
cloc
cloog
cloverleaf
cloverleaf3d
clp
clustal-omega
clustalw
cmake	cmake: add support for xlf and ninja (#13796 )	2019-11-26 11:29:25 -05:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit	update to add ascent 0.5.0 release (#13709 )	2019-11-17 12:36:14 -07:00
connect-proxy
constype
converge	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
coreutils
corset
cosmomc
cosp2
cotter
cowsay
cp2k
cppad
cppcheck
cppgsl
cpprestsdk
cppunit	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
cppzmq
cpu-features
cpuinfo
cquery
cram
cromwell
cromwell-womtool
cryptopp
cryptsetup	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
cscope
csdp
ctffind
cub
cube
cubelib
cubew
cuda	CUDA: Keep 10.1.243 As Preferred (#13983 )	2019-12-04 21:28:10 -06:00
cuda-memtest
cudnn	cuDNN: add new versions (#13668 )	2019-11-11 12:53:26 -06:00
cufflinks
cups
curl
cvs
cxxopts
czmq
dakota
daligner
damageproto
damaris
damselfly	damselfly: Add mpi dependency. (#13694 )	2019-11-12 11:58:11 -06:00
darshan-runtime	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
darshan-util
dash
datamash
dataspaces	Removed github repository and develop version from dataspaces package as it is no longer present/accessible. (#13740 )	2019-11-14 16:20:13 -06:00
dateutils
davix
dbcsr
dbus
dcmtk
dd4hep
dealii	amber: Improved package.py and added version 18 (#13945 )	2019-12-02 16:01:14 -06:00
dealii-parameter-gui	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
deconseq-standalone	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
dejagnu
delly2
denovogear
dftfe
dia
dialign	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
dialign-tx
diamond
diffsplice
diffutils
dimemas
direnv
discovar
discovardenovo
dislin
diy
dlpack
dmd	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
dmlc-core
dmtcp	Update DMTCP package to v2.6.0 (#13739 )	2019-11-14 16:20:44 -06:00
dmxproto
docbook-xml
docbook-xsl	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
dos2unix
dotnet-core-sdk
double-conversion
doxygen	doxygen: added missing dependencies to the package (#10589 )	2019-11-21 15:30:31 +01:00
draco
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst
dysco
ea-utils
easybuild
ebms
eccodes
ecflow
eclipse-gcj-parser	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
ecos
ecp-io-sdk
ecp-proxy-apps
ecp-viz-sdk
ed
editline
editres
eem
eigen	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
elasticsearch
elemental
elfutils	Add Elfutils 0.178 (#13976 )	2019-12-04 07:50:44 -06:00
elk
elmerfem
elpa
elsd
elsdc
elsi
emacs
ember
emboss
enchant
energyplus
entrezdirect
environment-modules	environment-modules: add version 4.4.0 (#13772 )	2019-11-18 10:53:06 -07:00
eospac	eospac: fix url (#13998 )	2019-12-05 09:30:35 -07:00
eq-r	eq-r: Fix use of Executable.__call__() (#13952 )	2019-12-02 13:13:05 -06:00
er
erfa
ermod
erne
es-shell
esmf
essl
ethminer
ethtool	ethtool: new package at version 4.8 (#13864 )	2019-11-23 09:17:49 +01:00
etsf-io
everytrace	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
everytrace-example	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exiv2
exmcutils
exodusii
exonerate
expat
expect
express	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
extrae	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
exuberant-ctags
eztrace
f18
f90cache
fabtests
falcon
fann
faodel
fast-global-file-status
fasta
fastjar
fastmath	Fastmath: Added required version (#13990 )	2019-12-06 12:38:29 -06:00
fastme
fastp
fastphase
fastq-screen
fastqc	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg
fftw
fgsl	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
figtree
file	Added "file" package and added missing depenency to VIM (#13705 )	2019-11-13 18:12:10 -06:00
fimpute
find-circ	find-circ: a new package. (#13767 )	2019-11-20 16:02:34 -07:00
findutils
fio
fish
fixesproto
fl
flac
flang	Convert llvm Spackage to use the monorepo (#11392 )	2019-12-06 12:01:30 -06:00
flann
flash
flatbuffers
flatcc
flecsale
flecsi	add more legion version and expose more flecsi options (#13741 )	2019-11-18 23:51:41 -07:00
flecsph
flex	Add missing dependencies to flex. (#13692 )	2019-11-12 12:01:15 -06:00
flibcpp
flint
flit
fltk
flux-core
flux-sched
fluxbox
fmt
foam-extend	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
folly
font-util	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fpocket
fqtrim
fr-hit
freebayes
freeglut
freeimage
freetype
freexl
fribidi
fseq
fsl	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
fslsfonts
fstobdf
fstrack
ftgl
fujitsu-mpi	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
funhpc
fyba
fzf
g4abla
g4emlow
g4ensdfstate	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
g4ndl
g4neutronxs
g4photonevaporation
g4pii
g4radioactivedecay
g4realsurface
g4saiddata
g4tendl
gams	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
gapbs
gapcloser
gapfiller
gasnet
gatk	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
gaudi
gaussian	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
gawk	Update package libgpg error (#13697 )	2019-12-03 10:29:15 -06:00
gblocks
gcc
gccmakedep
gccxml
gconf
gcta
gdal
gdb
gdbm
gdk-pixbuf	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
gdl
geant4	Update Geant4 version and recipe (#13840 )	2019-11-29 16:21:51 -06:00
geant4-data
gearshifft
gemmlowp
genemark-et	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
genomefinisher
genometools	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
genrich	genrich: new package at 0.6 (#13791 )	2019-11-20 15:47:36 -07:00
geopm	package/geopm: Added versions 1.0.0 and 1.1.0 (#13721 )	2019-11-14 12:01:03 -06:00
geos
gettext
gflags
ghost
ghostscript
ghostscript-fonts
giflib
ginkgo
git	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
git-fat-git
git-imerge	Mark py-argparse dependency everywhere with ^python@:2.6 (#13928 )	2019-11-30 13:07:14 -06:00
git-lfs
gl2ps
glew
glfmultiples
glib
glibmm
glimmer
glm
global
globalarrays
glog
gloo
glpk
glproto
glvis
gmake	Added "file" package and added missing depenency to VIM (#13705 )	2019-11-13 18:12:10 -06:00
gmap-gsnap
gmime
gmodel
gmp
gmsh
gmt
gmtsar
gnat
gnome-common
gnupg
gnuplot
gnutls	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
go	Added go 1.13.5 and 1.12.14 (#13997 )	2019-12-05 11:29:00 -06:00
go-bootstrap	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
go-md2man
gobject-introspection	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
googletest
gotcha
gource
gperf
gperftools
gpgme
gplates
gprolog
gpu-burn	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
grass	Add grass 7.8.1 (#13664 )	2019-11-09 19:41:29 -06:00
grep	Added "file" package and added missing depenency to VIM (#13705 )	2019-11-13 18:12:10 -06:00
grib-api
grnboost	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
groff
gromacs	Adding final bug-releases for the gromacs-2016 and -2018 and Plumed (#13715 )	2019-11-14 12:00:36 -06:00
grpc
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
gtksourceview	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
gts
guidance
guile	guile package: Handling the threads option. (#13730 )	2019-11-16 14:34:38 -07:00
gurobi	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
gzip	Added "file" package and added missing depenency to VIM (#13705 )	2019-11-13 18:12:10 -06:00
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz
harminv
hc
hdf
hdf5
hdf5-blosc	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
heaptrack
help2man
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
hisea
hmmer	added hmmer v 3.3 (#13793 )	2019-11-20 19:04:27 -07:00
homer
hoomd-blue
hotspot
hpccg
hpctoolkit
hpcviewer	hpcviewer: add version 2019.09 (#14004 )	2019-12-05 18:59:30 -06:00
hpgmg
hpl
hpx	add MAX_CPU_COUNT variant to HPX package (#13769 )	2019-11-19 12:49:32 -07:00
hpx5
hsakmt
hstr
htop
htslib
httperf	httperf: added new package (#13875 )	2019-11-26 13:38:48 +01:00
httpie	Mark py-argparse dependency everywhere with ^python@:2.6 (#13928 )	2019-11-30 13:07:14 -06:00
hub
hugo
hunspell
hwloc	hwloc: added 'master' version pointing at the HEAD of the master branch (#13731 )	2019-11-14 12:06:07 -06:00
hybpiper	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
hydra
hydrogen	Updated versions numbers for Aluminum and Hydrogen. (#13814 )	2019-11-20 19:04:01 -07:00
hyphy
hypre
i3
ibm-java	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
ibmisc
iceauth
icedtea	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
icet	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
ico
icu4c	Mark conflicts between newer packages and Intel 14 compilers (#13729 )	2019-11-14 16:27:36 -06:00
id3lib
idba
iegenlib
igraph
igvtools
ilmbase
imagemagick
imake
imp
impute2
infernal
inputproto
intel	Bump intel compiler suite to 2019u5. (#13835 )	2019-11-27 10:04:48 -06:00
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl	Bump intel compiler suite to 2019u5. (#13835 )	2019-11-27 10:04:48 -06:00
intel-mkl-dnn	Add new version of Intel MKL-DNN (#13669 )	2019-11-11 12:52:53 -06:00
intel-mpi	Bump intel compiler suite to 2019u5. (#13835 )	2019-11-27 10:04:48 -06:00
intel-parallel-studio	Bump intel compiler suite to 2019u5. (#13835 )	2019-11-27 10:04:48 -06:00
intel-pin
intel-tbb	Use correct range check for the version (#13977 )	2019-12-04 07:50:05 -06:00
intel-xed
interproscan
intltool
ioapi
ior
iozone
iperf2
iperf3
ipopt
isaac
isaac-server
isl
iso-codes
itstool
itsx
jackcess
jags
jansson
jasper
jbigkit
jchronoss
jdk	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
jellyfish
jemalloc
jmol	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
jq
json-c
json-cwx
json-fortran	json-fortran: get unit tests working (#13919 )	2019-11-27 13:15:55 -06:00
json-glib
jsoncpp
jube	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi	kaldi: Change process of version analysis when using Fujitsu compiler. (#13960 )	2019-12-03 10:34:05 -06:00
kallisto
karma	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
kbproto
kdiff3
kealib
kentutils
kibana
kim-api
kitty
kmergenie
kokkos
kokkos-kernels
kraken
krb5
krims
kripke
kvasir-mpl
kvtree
ladot
laghos
lame
lammps	Updated LAMMPS package to use gpu and kokkos options. (#13886 )	2019-11-25 13:22:31 -06:00
last
lastz
laszip
latte
launchmon	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
lazyten
lbann	Mark py-argparse dependency everywhere with ^python@:2.6 (#13928 )	2019-11-30 13:07:14 -06:00
lbxproxy
lbzip2
lcals
lcms
lcov	added lcov package (#13687 )	2019-11-11 15:13:48 -06:00
ldc
ldc-bootstrap	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
legion	add more legion version and expose more flecsi options (#13741 )	2019-11-18 23:51:41 -07:00
lemon
leveldb
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbeato
libbsd	Fix libbsd on Intel compilers (#13720 )	2019-11-14 11:59:46 -06:00
libbson
libcanberra
libcap
libceed
libcerf
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libeatmydata
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric	bump libfabric to 1.9.0 (#13964 )	2019-12-03 10:32:53 -06:00
libffi	Fixed url. url="https://sourceware.org/pub/libffi/libffi-3.2.1.tar.gz ") (#13693 )	2019-11-12 11:58:49 -06:00
libffs
libfive
libflame
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libglvnd
libgpg-error	Update package libgpg error (#13697 )	2019-12-03 10:29:15 -06:00
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libiberty
libibumad
libice
libiconv
libidn2
libint	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
libjpeg
libjpeg-turbo
libkml
libksba
liblas
liblbxutil
liblockfile
libmad
libmatheval
libmaxminddb
libmesh	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
libmmtf-cpp	Py-pymol package has been updated to the latest version (#13764 )	2019-11-26 10:42:39 -06:00
libmng
libmo-unpack
libmonitor
libnbc
libnl
libnova
libnrm
libnsl
libogg
liboldx
libpcap
libpciaccess
libpeas	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
libpfm4
libpipeline
libplist
libpmemobj-cpp
libpng
libpsl
libpthread-stubs
libquo
librom
librsvg	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
libseccomp
libsecret
libsharp
libshm
libsigcpp
libsigsegv
libsm
libsodium
libspatialindex
libspatialite
libsplash
libssh
libssh2
libsvm
libszip
libtasn1
libtermkey
libtiff
libtirpc
libtomlc99
libtool	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
libunistring
libunwind
libusb
libusbmuxd
libuuid
libuv
libvdwxc
libvorbis
libvterm
libwebp
libwebsockets
libwindowswm
libx11	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
libxau
libxaw
libxaw3d
libxc	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2	fix libxml2 url (#13770 )	2019-11-18 10:58:16 -07:00
libxmu
libxp
libxpm	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml
libyogrt
libzip
libzmq
liggghts
lighttpd
likwid	likwid: added version 5.0.0 (#13858 )	2019-11-23 09:21:59 +01:00
linkphase3
linux-headers	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
listres
lizard
llvm	Add patch to fix issue building current llvm develop master on power9 (#13986 )	2019-12-06 12:38:58 -06:00
llvm-openmp
llvm-openmp-ompt
lm-sensors	Improved library access for lm-sensors and implemented use in papi. (#13885 )	2019-11-25 15:42:14 -06:00
lmdb
lmod	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsf
lshw	add new package : lshw (#13933 )	2019-11-30 01:13:23 -06:00
lsof	lsof: fix url and checksum (#13801 )	2019-11-26 12:10:14 -06:00
ltp	ltp: added new package (#13878 )	2019-11-25 14:38:25 +01:00
ltrace
lua	Specify self for internal setup method (#14008 )	2019-12-06 12:04:57 -06:00
lua-bitlib
lua-lpeg
lua-luafilesystem
lua-luajit
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lvm2
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics
magma
makedepend
maker
mallocmc
man-db
manta
mapnik	Mapnik: fix runtime error involving py-pycairo and PDF (#13865 )	2019-11-25 13:01:14 -06:00
mapserver
maq
margo
mariadb
mariadb-c-client
masa
masurca
mathematica	Update Mathematica recipe (#13679 )	2019-11-26 12:22:31 -06:00
matio
matlab
maven
maverick
mawk
mbedtls
mc	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
mcl
mdtest
med
meep
mefit	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
megadock
megahit
memaxes
meme
memkind
memsurfer	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
meraculous	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
mercurial	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
mercury
mesa
mesa-glu
meshkit
meson
mesquite
metabat	metabat: add versions 2.14 and 2.13 (#13369 )	2019-11-26 14:14:11 -06:00
metaphysicl
metis	update to add ascent 0.5.0 release (#13709 )	2019-11-17 12:36:14 -07:00
mfem	update to add ascent 0.5.0 release (#13709 )	2019-11-17 12:36:14 -07:00
mg	Add mg, a gnu-emacs like fork of microemacs (#13812 )	2019-11-21 11:40:13 -07:00
mgis	Fix mgis package dependency on boost/numpy (#13717 )	2019-11-13 15:35:09 -06:00
microbiomeutil	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
migrate
mii	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2	Bump miniconda2 miniconda3 to 4.7.12.1 . (#13897 )	2019-11-26 10:52:07 -06:00
miniconda3	Bump miniconda2 miniconda3 to 4.7.12.1 . (#13897 )	2019-11-26 10:52:07 -06:00
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minivite
minixyce
minizip
minuit
mira
miranda	miranda: a new package. (#13768 )	2019-11-20 16:01:41 -07:00
mirdeep2
mitofates	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
mitos
mixcr	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
mkfontdir
mkfontscale
mlhka
mmg
moab
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-c-driver
mongo-cxx-driver
mono
montage
mosh
mothur
motif
motioncor2
mount-point-attributes
mozjs
mpark-variant	MPark.Variant: Patch NVCC C++14 Build (#13901 )	2019-11-26 13:07:02 -07:00
mpc
mpdecimal
mpe2
mpest	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
mpfr
mpi-bash
mpich	mpich: update build requirements (#13966 )	2019-12-03 17:13:52 -06:00
mpifileutils
mpilander
mpileaks
mpip
mpir
mpix-launch-swift
mpt	Fixing Fortran MPI compiler reference in mpt package (#13699 )	2019-11-12 11:57:07 -06:00
mrbayes	Update MrBayes to 3.2.7a and correct MPI variants (#13929 )	2019-12-03 10:31:00 -06:00
mrnet
mrtrix3	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
mscgen
msgpack-c
mshadow
msmc
mstk	Variant for enabling tests, versions, cleanup (#13882 )	2019-11-26 10:48:34 -06:00
multitail
multitime
multiverso
mummer
mumps	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
munge
muparser
muscle
muse
musl
muster
mutationpp	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
mvapich2	Update MVAPICH2 package for 2.3.2 release (#13236 )	2019-11-13 15:18:35 -06:00
mxml
mxnet
mysql	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
nag	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
nalu
nalu-wind
namd
nano
nanoflann
nanopb
nasm	Mark conflicts between newer packages and Intel 14 compilers (#13729 )	2019-11-14 16:27:36 -06:00
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses	ncurses: don't run strip internally (#13843 )	2019-11-23 20:47:59 -07:00
ncview
ndiff
nek5000
nekbone
nekcem
nektar
nektools
neovim
nest	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
netcdf-c
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack
netlib-scalapack
netlib-xblas
netperf	netperf: added new package (#13876 )	2019-11-25 15:12:32 +01:00
nettle
neuron	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
nextflow
nfft
nghttp2	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
nginx	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
ngmlr
nim
ninja
ninja-fortran
nix
nlohmann-json	nlohmann-json 3.7.2 (#13672 )	2019-11-11 11:23:50 +01:00
nlopt	Update nlopt package to add Python bindings to PYTHONPATH (#13688 )	2019-11-12 11:46:12 -06:00
nmap
nnvm
node-js
notmuch
npb
npm	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
npth
nrm	Mark py-argparse dependency everywhere with ^python@:2.6 (#13928 )	2019-11-30 13:07:14 -06:00
nseg
nspr
ntpoly
numactl
numdiff
nut
nvptx-tools
nwchem
nyancat
ocaml	ocaml: fix url (#13749 )	2019-11-26 12:21:29 -06:00
occa	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
oce
oclint	Mark py-argparse dependency everywhere with ^python@:2.6 (#13928 )	2019-11-30 13:07:14 -06:00
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-catalyst
of-precice
omega-h
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
opam	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
opari2
openbabel
openblas
opencascade	Add package opencascade (#13938 )	2019-11-30 15:08:52 -06:00
opencoarrays
opencv
openexr
openfast
openfdtd
openfoam
openfoam-org	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
openfst
opengl
openglu
openimageio
openjdk	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
openjpeg
openkim-models
openldap
openmc
openmpi	openmpi: add 3.1.5 and 3.0.5 (#13918 )	2019-11-27 14:02:05 -06:00
openmx
opennurbs
openpa
openpmd-api	openPMD-api: 0.10.0 (#13750 )	2019-11-17 12:35:40 -07:00
openscenegraph
openslide
openspeedshop
openspeedshop-utils
openssh
openssl
openstf
opium
optional-lite
optipng
opus
orca
orfm
orthofiller
orthofinder
orthomcl	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
osmctools
osqp
osu-micro-benchmarks	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
otf
otf2
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal
paml
panda
pandaseq
pandoc
pango	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pangomm
papi	Improved library access for lm-sensors and implemented use in papi. (#13885 )	2019-11-25 15:42:14 -06:00
papyrus
paradiseo
parallel
parallel-netcdf
paraver
paraview	paraview: Adjust python version constraints (#13999 )	2019-12-05 12:06:47 -06:00
parmetis
parmgridgen
parquet-cpp
parsimonator
parsplice
partitionfinder
pasta	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
patch
patchelf
pathfinder
pax-utils
pbbam	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pbmpi
pbsuite	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
perl	Handle external perl (#13903 )	2019-11-29 12:30:40 +01:00
perl-acme-damn
perl-algorithm-diff
perl-alien-build
perl-alien-libxml2
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bioperl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-db-file
perl-dbd-mysql
perl-dbd-pg
perl-dbd-sqlite
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-devel-symdump
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-error
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-ffi-checklib
perl-file-chdir
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-forks
perl-gd
perl-gdgraph
perl-gdgraph-histogram
perl-gdtextutil
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-io-all
perl-io-compress
perl-io-html
perl-io-prompt
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-io-stringy
perl-io-tty
perl-ipc-run
perl-json
perl-libwww-perl
perl-libxml-perl
perl-list-moreutils
perl-list-moreutils-xs
perl-log-log4perl
perl-logger-simple
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-mailtools
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-path-tiny
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perl-unsafe-signals
perl-perl-version
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intervaltree
perl-set-intspan
perl-set-scalar
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-sys-sigaction
perl-task-weaken
perl-term-readline-gnu
perl-termreadkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-timedate
perl-try-tiny
perl-uri
perl-want
perl-www-robotrules
perl-xml-dom
perl-xml-dom-xpath
perl-xml-filter-buffertext
perl-xml-libxml
perl-xml-libxslt
perl-xml-namespacesupport
perl-xml-parser
perl-xml-parser-lite
perl-xml-quote
perl-xml-regexp
perl-xml-sax
perl-xml-sax-base
perl-xml-sax-writer
perl-xml-simple
perl-xml-twig
perl-xml-writer
perl-xml-xpathengine
perl-yaml
perl-yaml-libyaml
petsc	petsc: add version 3.12.2 (#13859 )	2019-11-22 20:35:16 -06:00
pexsi
pfft
pflotran	xsdk@0.5.0 (#13682 )	2019-11-14 16:36:51 -06:00
pfunit	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pgdspider
pgi	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pgmath
phantompeakqualtools
phast
phasta
phist
phrap-crossmatch-swat
phred
phylip
phyluce
picard	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
picsar
picsarlite
pidx
pigz
pilon
pindel
pipework	add new package : pipework (#13934 )	2019-11-29 12:19:13 -06:00
piranha
pism
pixman
pixz
pkg-config	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pkgconf	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pktools
planck-likelihood	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
plasma
platypus
plink
plplot
plumed	Adding final bug-releases for the gromacs-2016 and -2018 and Plumed (#13715 )	2019-11-14 12:00:36 -06:00
pmdk	pmdk: fix x86_64 arch check (#13676 )	2019-11-11 15:46:44 +01:00
pmgr-collective
pmix
pmlib
pnfft
pngquant
pngwriter
pnmpi
poamsa
pocl
polymake
poppler
poppler-data
popt
porta
portage
portcullis
postgresql	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
powerapi
ppl
pplacer
prank	prank: use Spack compilers and remove x86_64 opts from Makefile (#13877 )	2019-11-25 15:14:18 +01:00
precice	precice: enable petsc by default (#13696 )	2019-11-12 11:40:37 -06:00
presentproto
preseq	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
price
primer3
prinseq-lite
printproto
prng
probconsrna
procps
prodigal	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
proj
protobuf
protobuf-c
proxymngr
prrte
pruners-ninja
ps-lite
psi4
pslib
psm
psmc	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pstreams
pugixml
pumi
pv
pvm	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py
py-adios
py-advancedhtmlparser
py-aenum
py-affine
py-alabaster
py-alembic
py-altgraph
py-amqp	py-amqp: added new package (#13848 )	2019-11-25 16:26:59 +01:00
py-antlr4-python3-runtime
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-arrow	Fix py-pyarrow recipe (#13914 )	2019-11-27 12:21:01 -06:00
py-asdf
py-ase
py-asn1crypto
py-aspy-yaml
py-astor	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-astroid
py-astropy
py-astunparse
py-async-generator
py-atomicwrites
py-atropos
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size	Loosen restriction on setuptools version of py-backports-shutil-get-terminal-size: the bug seems to be fixed at least in setuptools 41.0.0 (#13927 )	2019-11-28 11:54:01 -06:00
py-backports-ssl-match-hostname
py-backports-tempfile
py-backports-weakref	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-basemap	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-bcbio-gff
py-beautifulsoup4
py-billiard	Add the py-billiard package (#13849 )	2019-11-23 14:14:28 +01:00
py-bintrees
py-binwalk
py-biom-format
py-biomine
py-biopython
py-bitarray
py-bitstring
py-black
py-bleach
py-blessed
py-blessings
py-blinker
py-bokeh
py-boltons
py-boto3
py-botocore
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-brotlipy
py-bsddb3
py-bx-python
py-bz2file
py-cached-property	py-cached-property: added new package at v 1.5.1 (#13850 )	2019-11-23 09:20:24 +01:00
py-cachetools
py-cairocffi
py-cartopy	Update cartopy version and fix recipe (#13898 )	2019-11-27 20:01:05 -06:00
py-cclib
py-cdat-lite
py-cdo
py-cdsapi
py-celery	py-celery: added new package (#13851 )	2019-11-25 16:28:06 +01:00
py-certifi
py-certipy
py-cf-units
py-cffi
py-cfgv
py-cftime
py-chai
py-chardet
py-checkm-genome
py-cheetah
py-cheroot	New package: py-cheroot (#13583 )	2019-11-27 14:02:43 -06:00
py-cherrypy
py-click
py-click-plugins
py-cligj
py-clipboard
py-cloudpickle
py-codecov
py-cogent	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-colorama
py-coloredlogs	Add the py-coloredlogs package (#13852 )	2019-11-25 16:56:34 -06:00
py-colorlog
py-colormath
py-colorpy
py-configobj
py-configparser
py-contextlib2
py-convertdate
py-counter
py-cov-core
py-coverage
py-crispresso
py-crossmap
py-cryptography
py-cssselect	add new package : py-cssselect (#13879 )	2019-11-25 14:32:04 +01:00
py-csvkit
py-current
py-cutadapt
py-cvxopt	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-cvxpy
py-cycler
py-cython
py-dask
py-dataclasses
py-dateparser
py-dbf
py-decorator
py-deeptools
py-deeptoolsintervals
py-defusedxml
py-dendropy
py-deprecation
py-descartes
py-dill
py-discover
py-dlcpar
py-dnaio
py-docopt
py-docutils
py-docutils-stubs
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-earthengine-api
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-ecdsa
py-ecos
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-empy
py-entrypoints
py-enum34	py-matplotlib only needs backports when ^python@:2 (#13712 )	2019-11-14 16:26:44 -06:00
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-exodus-bundler
py-fallocate
py-fastaindex
py-fastcache
py-fasteners
py-faststructure
py-filelock
py-filemagic
py-fiona
py-fiscalyear
py-flake8
py-flake8-import-order
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-fn-py
py-fortranformat
py-fparser
py-freezegun
py-fsspec
py-funcsigs
py-functools32
py-future
py-futures
py-fypp
py-gast	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-gdbgui
py-gdc-client
py-gee-asset-manager
py-geeadd
py-geeup
py-genders
py-genshi
py-gensim
py-geoalchemy2
py-geopandas
py-gevent
py-git-review	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-gnuplot
py-goatools
py-google-api-core
py-google-api-python-client
py-google-auth
py-google-auth-httplib2
py-google-cloud-core
py-google-cloud-storage
py-google-pasta	Add py-google-pasta package (#13807 )	2019-11-20 15:20:47 -07:00
py-google-resumable-media
py-googleapis-common-protos
py-gpaw
py-graphviz
py-greenlet
py-grequests
py-griddataformats
py-grpcio	Add new py-grpcio package (#13808 )	2019-11-20 15:20:28 -07:00
py-guidata
py-guiqwt
py-h5glance
py-h5py
py-h5sh	Add h5sh python package (#14001 )	2019-12-06 11:58:59 -06:00
py-hdfs
py-hepdata-validator
py-hpccm
py-html2text
py-html5lib
py-htseq
py-httpbin
py-httplib2
py-humanfriendly	Add the py-humanfriendly package (#13853 )	2019-11-23 19:12:03 +01:00
py-humanize
py-hypothesis
py-ics
py-identify
py-idna
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
py-importlib
py-importlib-metadata
py-importlib-resources	Add the py-importlib-resources package (#13854 )	2019-11-25 13:00:45 -06:00
py-iniparse
py-invoke
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jaraco-functools
py-jdatetime
py-jdcal
py-jedi
py-jellyfish	New python packages (#9974 )	2019-11-30 16:32:02 -06:00
py-jinja2
py-jmespath
py-joblib
py-jplephem
py-jprops
py-jpype1
py-jsonpatch
py-jsonpointer
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyterhub
py-keras
py-keras-applications
py-keras-preprocessing
py-kitchen
py-kiwisolver
py-kmodes
py-kombu	py-kombu: added new package (#13855 )	2019-11-25 16:02:03 +01:00
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble	Update libensemble to v0.6.0 (#13987 )	2019-12-04 18:01:05 -06:00
py-ligo-segments
py-line-profiler	Fix py-line-profiler incompatible decorators (#13911 )	2019-11-27 15:30:53 +01:00
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lru-dict
py-lscsoft-glue
py-luigi
py-lxml
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-markdown
py-markupsafe
py-matplotlib	Add py-matplotlib 3.1.2 (#13994 )	2019-12-05 00:00:20 -06:00
py-mccabe
py-mdanalysis
py-mechanize
py-memory-profiler
py-merlin
py-metasv
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune	add new versions to py-mistune (#13887 )	2019-11-25 16:55:53 -06:00
py-mlxtend
py-mo-pack
py-mock
py-modred
py-moltemplate
py-monotonic
py-monty
py-more-itertools
py-mpi4py
py-mpld3
py-mpmath
py-multi-key-dict
py-multiprocess
py-multiqc	py-matplotlib only needs backports when ^python@:2 (#13712 )	2019-11-14 16:26:44 -06:00
py-munch
py-mx
py-myhdl
py-mypy
py-mypy-extensions
py-mysql-connector-python
py-mysqlclient
py-mysqldb1
py-natsort
py-nbconvert	update py-nbconvert (#13422 )	2019-11-26 12:25:48 -06:00
py-nbformat
py-nc-time-axis
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nodeenv
py-nose
py-nose2
py-nose-cov
py-nosexcover
py-notebook
py-numba	Mark py-argparse dependency everywhere with ^python@:2.6 (#13928 )	2019-11-30 13:07:14 -06:00
py-numexpr
py-numexpr3	py-numexpr3: fix version (#13781 )	2019-11-20 15:49:13 -07:00
py-numpy	py-numpy: added version 1.17.4 (#13670 )	2019-11-11 11:26:21 +01:00
py-numpydoc
py-oauth2client
py-oauthlib
py-olefile
py-onnx
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-opppy	Mark py-argparse dependency everywhere with ^python@:2.6 (#13928 )	2019-11-30 13:07:14 -06:00
py-opt-einsum	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-ordereddict
py-oset
py-osqp
py-overpy
py-owslib
py-packaging
py-palettable
py-pamela
py-pandas
py-pandocfilters
py-paramiko
py-parse	Add the py-parse package (#13856 )	2019-11-23 09:36:29 +01:00
py-partd
py-path-py
py-pathlib
py-pathlib2
py-pathos
py-pathspec
py-patsy	New package: py-wub, with supporting fixes (#13773 )	2019-11-22 20:34:43 -06:00
py-pauvre
py-pbr
py-pep8	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-pep8-naming
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow	py-pillow: allow older versions to build with python 3.4 (#14000 )	2019-12-05 11:27:33 -06:00
py-pint
py-pip
py-pipits	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-pispino
py-pkgconfig
py-pkginfo
py-planar
py-plotly
py-pluggy
py-ply
py-pmw
py-portend
py-poster
py-pox
py-ppft
py-pre-commit
py-prettytable
py-progress
py-progressbar2
py-projectq
py-prometheus-client
py-prompt-toolkit
py-protobuf	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-psutil
py-psyclone	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-py-cpuinfo
py-pyani
py-pyarrow
py-pyasn1
py-pyasn1-modules
py-pybedtools
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares
py-pycbc
py-pychecker
py-pycmd	New package: py-wub, with supporting fixes (#13773 )	2019-11-22 20:34:43 -06:00
py-pycodestyle
py-pycparser
py-pycrypto
py-pycuda
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pydot2
py-pydotplus
py-pydv
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdal
py-pygdbmi
py-pygit2
py-pyglet
py-pygments
py-pygobject
py-pygpu
py-pygresql
py-pygtk
py-pyjwt
py-pyke
py-pykml
py-pykwalify
py-pyliblzma
py-pylint
py-pymatgen
py-pymeeus
py-pyminifier
py-pymol	Py-pymol package has been updated to the latest version (#13764 )	2019-11-26 10:42:39 -06:00
py-pymongo
py-pymorph
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc
py-pyomo
py-pyopenssl
py-pypar
py-pyparsing
py-pypeflow
py-pyperclip
py-pyperf
py-pyprof2html
py-pyproj	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-pyqi
py-pyqt4	new package Qscintilla (with python bindings via py-pyqt ) (#12793 )	2019-11-14 12:01:49 -06:00
py-pyqt5	new package Qscintilla (with python bindings via py-pyqt ) (#12793 )	2019-11-14 12:01:49 -06:00
py-pyrad
py-pyrosar
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pyside2	New Package: py-pyside2 (#13647 )	2019-11-09 18:22:30 -06:00
py-pysmartdl
py-pysocks
py-pyspark
py-pysqlite
py-pytailf
py-pytest
py-pytest-cache	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-pytest-cov
py-pytest-flake8
py-pytest-forked
py-pytest-httpbin
py-pytest-isort
py-pytest-mock
py-pytest-pep8	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-pytest-runner
py-pytest-xdist	add more versions (#13957 )	2019-12-02 18:30:08 -06:00
py-pythia
py-python-daemon
py-python-dateutil
py-python-editor
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-igraph
py-python-jenkins
py-python-ldap
py-python-levenshtein
py-python-magic
py-python-mapnik	Mapnik: fix runtime error involving py-pycairo and PDF (#13865 )	2019-11-25 13:01:14 -06:00
py-python-meep
py-python-memcached
py-python-oauth2
py-python-socketio
py-python-utils
py-pythonqwt
py-pytools
py-pytz
py-pyudev
py-pyugrid
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-pyzmq
py-qtawesome
py-qtconsole
py-qtpy	py-qtpy: enable use with pyqt5, pyside and pyside2 (#13837 )	2019-11-25 16:14:57 +01:00
py-quantities
py-quast
py-queryablelist
py-radical-utils
py-ranger-fm	add new version for py-ranger-fm (formerly py-ranger) (#13681 )	2019-11-12 12:05:18 -06:00
py-rasterio
py-ratelim
py-raven
py-readme-renderer
py-redis
py-regex
py-reportlab
py-repoze-lru
py-requests
py-requests-futures
py-requests-oauthlib
py-requests-toolbelt
py-restview
py-retrying
py-rnacocktail	py-rnacocktail: a new package. (#13761 )	2019-11-18 14:09:39 -07:00
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-ruamel-yaml
py-s3transfer
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn	Add latest version of py-scikit-learn (#13979 )	2019-12-04 11:47:07 -06:00
py-scikit-optimize
py-scipy	Add py-scipy 1.3.3 (#13866 )	2019-11-23 16:50:02 -06:00
py-scoop
py-scp
py-scs
py-seaborn
py-selenium
py-semantic-version
py-semver
py-send2trash
py-setuptools
py-setuptools-git
py-setuptools-scm
py-setuptools-scm-git-archive	scm-git-archive python package (#13915 )	2019-11-27 15:43:19 -06:00
py-sfepy
py-sgp4
py-sh
py-shapely	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
py-shiboken
py-simplegeneric
py-simplejson
py-simplekml
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-smart-open
py-sncosmo
py-snowballstemmer	Fix setuptools dependency in py-snowballstemmer (#13844 )	2019-11-23 15:25:24 +01:00
py-snuggs
py-sortedcontainers
py-soupsieve
py-spatialist
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxautomodapi
py-sphinxcontrib-applehelp
py-sphinxcontrib-bibtex
py-sphinxcontrib-devhelp
py-sphinxcontrib-htmlhelp
py-sphinxcontrib-jsmath
py-sphinxcontrib-programoutput
py-sphinxcontrib-qthelp
py-sphinxcontrib-serializinghtml
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels	New package: py-wub, with supporting fixes (#13773 )	2019-11-22 20:34:43 -06:00
py-stevedore
py-storm
py-stratify
py-subprocess32
py-svgpathtools	New python packages (#9974 )	2019-11-30 16:32:02 -06:00
py-svgwrite	New python packages (#9974 )	2019-11-30 16:32:02 -06:00
py-symengine
py-symfit
py-sympy
py-systemd-python
py-tables
py-tabulate
py-tap-py
py-tatsu
py-tblib
py-tempora
py-tensorflow	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-tensorflow-estimator	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-termcolor
py-terminado
py-testinfra
py-testpath
py-tetoolkit
py-texttable
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-torch	Add new version of Intel MKL-DNN (#13669 )	2019-11-11 12:52:53 -06:00
py-torchvision
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-treehash
py-tuiview
py-twine
py-twisted
py-typed-ast
py-typesentry
py-typing
py-typing-extensions
py-tzlocal
py-umalqurra
py-umi-tools
py-unicycler
py-unittest2
py-unittest2py3k
py-uritemplate
py-urllib3
py-urwid
py-us	New python packages (#9974 )	2019-11-30 16:32:02 -06:00
py-usgs
py-uwsgi
py-vcversioner
py-vine	Add the py-vine package (#13857 )	2019-11-23 09:35:07 +01:00
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-voluptuous
py-vsc-base
py-vsc-install
py-wand
py-warlock
py-wcsaxes
py-wcwidth
py-weave
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel
py-widgetsnbextension
py-wradlib
py-wrapt	Add new TensorFlow package (#13112 )	2019-12-05 18:48:20 -06:00
py-wub	New package: py-wub, with supporting fixes (#13773 )	2019-11-22 20:34:43 -06:00
py-wxpython
py-xarray
py-xattr	py-xattr: fix a package that was pointing to a fork (#13685 )	2019-11-18 12:09:47 +01:00
py-xdot
py-xenv
py-xlrd
py-xlsxwriter
py-xlwt	New python packages (#9974 )	2019-11-30 16:32:02 -06:00
py-xmlrunner
py-xmltodict
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt
py-zc-buildout
py-zipp
py-zope-event
py-zope-interface
pythia6
python	Speedup environment activation (#13557 )	2019-12-02 14:05:02 -08:00
qbank	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
qbox
qca
qhull
qjson
qmcpack	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
qmd-progress
qnnpack
qorts
qperf	add new package : qperf (#13935 )	2019-11-29 12:18:41 -06:00
qrupdate
qscintilla	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
qt	Fix conflict with respect to openssl and qt3 built for openspeedshop. (#13946 )	2019-12-02 13:13:31 -06:00
qt-creator
qtgraph	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
qthreads
qtkeychain
quantum-espresso
quinoa
qwt
qwtpolar
r	Build R without recommended packages (#12015 )	2019-11-27 20:58:12 -06:00
r3d
r-a4	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-a4base	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-a4classif	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-a4core	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-a4preproc	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-a4reporting	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-abadata	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-abaenrichment	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-acde	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-acgh	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-acme	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-adsplit	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-affxparser	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-affy	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-alpine	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-alsace	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-altcdfenvs	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-ampliqueso	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-analysispageserver	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-anaquin	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-aneufinder	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-aneufinderdata	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-animation
r-annaffy	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-annotate	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-annotationdbi	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-annotationfilter	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-annotationforge	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-annotationhub	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ape
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r-bamsignals	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-base64
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r-bbmisc
r-beachmat	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-beanplot
r-beeswarm	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-bfast
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r-biobase	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biocfilecache	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biocgenerics	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biocinstaller	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biocmanager	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biocneighbors	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biocparallel	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biocsingular	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biocstyle	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biom-utils
r-biomart	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biomformat	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biostrings	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-biovizbase	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-bit
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r-bsgenome	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-bumphunter	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-c50
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r-category	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-catools
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r-cellranger
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r-chemometrics	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-chron
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r-classint
r-cli
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r-clue	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-cluster
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r-clusterprofiler	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-cner	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-coda
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r-coin
r-colorspace
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r-commonmark
r-complexheatmap	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-compositions
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r-covr
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r-ctc	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-cubature
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r-delayedarray	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-delayedmatrixstats	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-deldir
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r-deseq	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-deseq2	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-desolve
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r-dirichletmultinomial	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-dismo
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r-dnacopy	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-do-db
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r-dose	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-dosnow
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r-ecp	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-edger	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ellipse
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r-enrichplot	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ensembldb	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ergm
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r-evaluate
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r-farver	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-fastcluster
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r-fgsea	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-fields
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r-gcrma	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-gdalutils
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r-geiger
r-genefilter	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-geneplotter	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-generics
r-genie3	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-genomeinfodb	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-genomeinfodbdata	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-genomicalignments	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-genomicfeatures	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-genomicranges	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-gensa
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r-geoquery	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-geor
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r-ggbeeswarm	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ggbio	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ggdendro
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r-ggjoy
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r-ggplotify	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ggpubr
r-ggraph	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-glimma	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-glmnet
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r-gofuncr	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-googlevis
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r-gosemsim	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-gostats	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-gower
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r-graph	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-grbase
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r-gridgraphics	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-gsa
r-gseabase	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-gtrellis	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-gviz	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-gwmodel
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r-hdf5array	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-hdf5r
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r-highr
r-hmisc
r-hms
r-hoardr
r-htmltable
r-htmltools
r-htmlwidgets
r-httpcode
r-httpuv
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r-hypergraph	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ica
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r-illuminaio	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-impute	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-influencer
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r-interactivedisplaybase	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-intervals
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r-ipred
r-iranges	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-irdisplay
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r-jaspar2018	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-jomo
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r-kegggraph	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-keggrest	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-kernlab
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r-leiden
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r-limma	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-listenv
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r-makecdfenv	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-maldiquant
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r-mapplots	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-mapproj
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r-markdown
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r-mco
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r-mergemaid	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-minfi	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-mlinterfaces	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-mlr
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r-msnbase	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-multcomp
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r-mzid	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-mzr	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-oligoclasses	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-openssl
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r-org-hs-eg-db	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-organismdbi	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-packrat
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r-pathview	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-pbapply
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r-pcamethods	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-pcapp
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r-pfam-db	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-phangorn
r-phantompeakqualtools	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
r-phyloseq	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-phylostratr
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r-plogr
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r-polyclip	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-polynom
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r-preprocesscore	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-prettyunits
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r-protgenerics	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-proto
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r-quantro	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-qvalue	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-r6
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r-rbgl	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-rbokeh
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r-rcpphnsw	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-reportingtools	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-repr
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r-rgraphviz	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-rhdf5	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
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r-rhmmer
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r-rnaseqmap	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-rngtools
r-rnoaa
r-robust
r-robustbase
r-rocr
r-rodbc
r-rook
r-rots	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrblup
r-rrcov
r-rrpp
r-rsamtools	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-rsnns
r-rsolnp
r-rspectra
r-rsqlite
r-rstan
r-rstantools
r-rstudioapi
r-rsvd
r-rtracklayer	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-samr
r-sandwich
r-scales
r-scater	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-scatterplot3d
r-scrime	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-sctransform
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-sessioninfo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shinyfiles
r-shortread	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-siggenes	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-simpleaffy	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-singlecellexperiment	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-sitmo
r-sm
r-smoof
r-sn
r-snakecase
r-snow
r-snowfall
r-snprelate	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-som
r-somaticsignatures	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-sourcetools
r-sp
r-spacetime
r-spam
r-sparsem
r-spatial
r-spatialreg
r-spdata
r-spdep
r-speedglm
r-spem	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-splancs
r-splitstackshape
r-sqldf
r-squarem
r-squash
r-sseq	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-survey
r-survival
r-sva	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-sys
r-tarifx
r-taxizedb
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tinytex
r-tmixclust	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-topgo	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-triebeard
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-tweenr	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-tximport	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-ucminf
r-udunits2
r-units
r-upsetr	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-urca
r-urltools
r-usethis
r-utf8
r-uuid
r-uwot
r-variantannotation	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-varselrf
r-vcd
r-vctrs
r-vegan
r-vfs
r-vgam
r-vioplot	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-webshot
r-wgcna
r-whisker
r-withr
r-xde	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-xfun
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-xml
r-xml2
r-xnomial
r-xopen
r-xtable
r-xts
r-xvector	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-yaml
r-yapsa	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-yaqcaffy	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-yarn	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-zeallot
r-zip
r-zlibbioc	Replace git-based Bioconductor R packages (#12005 )	2019-11-27 20:57:15 -06:00
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
range-v3
rankstr
rapidjson
ravel
raxml
ray
rclone	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
rdma-core
rdp-classifier
rdptools
re2c
readfq
readline
recon
recordproto
redis
redset
redundans
regcm
relax
relion
rempi
rename
rendercheck
renderproto
repeatmasker
repeatmodeler
repeatscout
resourceproto
revbayes	revbayes: add new versions (#13760 )	2019-11-16 00:12:38 -07:00
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rnaz	rnaz: new package at 2.1 (#13707 )	2019-11-13 15:48:06 -06:00
rngstreams
rocksdb
rockstar
rodinia
root	Fix ROOT dependencies (for +r variant) (#13839 )	2019-11-25 13:02:03 -06:00
rose
ross
routino
rpcsvc-proto
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
saga-gis
sailfish
salmon
sambamba
samblaster
samrai	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scallop
scalpel	Update scalpel package.py (#13746 )	2019-11-17 12:45:16 -07:00
scan-for-matches
scons
scorec-core
scorep
scotch
scr
screen
scripts
scrnsaverproto
scs
sctk
sdl2
sdl2-image
sdsl-lite
seacas
sed
sensei	Package/sensei: PR request for SENSEI (in situ analysis tool) recipe (#12973 )	2019-12-01 11:30:14 -06:00
sentieon-genomics	sentieon-genomics: add 201808.07 (#13794 )	2019-11-20 15:46:22 -07:00
seqan
seqkit
seqprep
seqtk
serf
sessreg
setxkbmap
sfcgal	new package: sfcgal (#12624 )	2019-11-13 15:19:43 -06:00
sga
shadow
shapeit
shared-mime-info	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
shiny-server	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
shocklibs
shoremap
shortbred	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
shortstack
showfont
shuffile
sickle
siesta
signalp	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
signify	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
silo
simgrid
simmetrix-simmodsuite	new package: Simmetrix SimModSuite (#8730 )	2019-12-03 12:07:27 -06:00
simplemoc
simul
simulationio
singularity	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
singularity-legacy
sirius	SIRIUS: add new version, add magma support (#13680 )	2019-11-11 16:19:40 -06:00
skilion-onedrive
skopeo
sl
slate	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
sleef
slepc	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
slurm
smalt
smof
smproxy
snakemake
snap
snap-berkeley
snap-korf	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
snappy
snbone
sniffles
snpeff
snphylo	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
snptest
soapdenovo2
soapdenovo-trans
sofa-c
sollve	Updating package for SOLLVE (#12607 )	2019-11-26 10:45:27 -06:00
somatic-sniper
sortmerna
sosflow	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
sowing
sox
spades
span-lite
spark	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
sparsehash
sparta
spdlog
spectrum-mpi	athena, mvapich2, spectrum-mpi: use new API to setup environment (#13677 )	2019-11-12 11:44:12 -06:00
speex
spfft
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite
sqlitebrowser
squashfs
squid
sratoolkit
ssht
sspace-longread
sspace-standard	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
sst-core
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat	add boost dependency to stat package (#13735 )	2019-11-14 16:26:24 -06:00
stata	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
stc
steps	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
stow
strace
stream
strelka
stress
string-view-lite
stringtie
structure
strumpack	strumpack: revert default to ~shared [i.e behavior before this variant was added] as +shared fails on multiple builds (#13703 )	2019-11-12 20:22:34 -06:00
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials	sundial: add patch for build failure on cori/theta (#13665 )	2019-11-12 07:52:05 -06:00
superlu
superlu-dist	Add missing metis include to superlu-dist (#13956 )	2019-12-02 18:30:23 -06:00
superlu-mt
supernova	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
sw4lite
swap-assembler
swarm
swfft
swftools
swiftsim	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
swig
swipl	New package: swipl (#13978 )	2019-12-05 09:51:38 -06:00
symengine
sympol
sysstat	add new package : sysstat (#13907 )	2019-11-26 21:01:04 -06:00
sz	sz: Change optimization flags for Fujitsu compiler (#14007 )	2019-12-06 12:05:16 -06:00
tabix
talass
talloc
tantan
tar
targetp	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
task
taskd
tasmanian
tassel	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
tau	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
tcl	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
tecplot
templight	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
templight-tools
tensorflow-serving-client	tensorflow-serving-client: add new package (#13771 )	2019-11-20 16:01:04 -07:00
tetgen
tethex
texinfo	texinfo: fix unescaped braces, and update locale handling (#13815 )	2019-11-20 20:54:55 -07:00
texlive	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
texstudio
textparser
tfel
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
tig
time
timemory
tinker	tinker: initial commit (#13869 )	2019-11-24 10:31:15 -07:00
tinyxml
tinyxml2
tioga
tippecanoe
tix
tk	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
tldd
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
tracer
transabyss
transdecoder	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos	trilinos: add version 12.18.1 with dtk-3.1 (#13690 )	2019-11-12 07:52:24 -06:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore	update to v0.6.4 (#13737 )	2019-11-14 16:26:08 -06:00
trimmomatic
trinity
trinotate
trnascan-se
turbine
turbomole	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
tut
twm
tycho2
typhon
typhonio
ucx
udunits
ufo-core
ufo-filters
umap
umoci
umpire
unblur
uncrustify
unibilium
unifyfs
unison
units
unittest-cpp
unixodbc
unrar
unuran
unzip
upcxx	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
uriparser
usearch
utf8proc
util-linux
util-macros	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
uuid
uvw
valgrind	Fix for overlong shebang in valgrind (#13779 )	2019-11-20 15:50:14 -07:00
vampirtrace
vardictjava
varscan	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
vc
vcftools	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
vcsh
vdt
vecgeom
veclibfort
vegas2
veloc
velvet
verilator	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
verrou
vesta	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
videoproto
viennarna
viewres
vigra
vim	Added "file" package and added missing depenency to VIM (#13705 )	2019-11-13 18:12:10 -06:00
virtualgl
visit
vizglow
vmatch
voropp
votca-csg	votca: help concretizer (#13906 )	2019-11-26 21:47:42 -06:00
votca-ctp	votca: help concretizer (#13906 )	2019-11-26 21:47:42 -06:00
votca-tools	votca-*: add v1.5.1 (#13822 )	2019-11-21 16:09:03 -07:00
votca-xtp	votca: help concretizer (#13906 )	2019-11-26 21:47:42 -06:00
vpfft
vpic
vsearch	update vsearch (#13736 )	2019-11-14 16:17:02 -06:00
vt
vtk	Add VTK version 8.2.0 (#13941 )	2019-11-30 16:32:19 -06:00
vtk-h	update to add ascent 0.5.0 release (#13709 )	2019-11-17 12:36:14 -07:00
vtk-m	silence vtkm logging until it does not report false positives to std::cerr (#13845 )	2019-11-26 12:19:36 -06:00
wannier90
warpx
watch
wcslib
wget
wgsim
which	Added "file" package and added missing depenency to VIM (#13705 )	2019-11-13 18:12:10 -06:00
windowswmproto
wireshark
wordnet	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
workrave	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
wt
wtdbg2
wxpropgrid
wxwidgets
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdmf3
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
xrx
xsbench
xscope
xsd	Mass conversion of setup_(dependent_)?environment (#13924 )	2019-11-29 15:00:44 -06:00
xsdk	xsdk@0.5.0 (#13682 )	2019-11-14 16:36:51 -06:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xssp
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp
yara
yasm
yorick
z3	z3: bugfix about python dependency and fallthrough annotation. (#13713 )	2019-11-14 16:28:05 -06:00
zfp
zip
zlib	zlib: use setup_build_environment for build env (#13786 )	2019-11-19 12:29:35 -07:00
zoltan
zsh
zstd