27 lines
860 B
Python
27 lines
860 B
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Fermi(MakefilePackage):
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"""A WGS de novo assembler based on the FMD-index for large genomes."""
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homepage = "https://github.com/lh3/fermi"
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url = "https://github.com/downloads/lh3/fermi/fermi-1.1.tar.bz2"
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version("1.1", sha256="f1351b52a4ff40e5d708899e90ecf747e7af8d4eac795f6968e5b58c2ba11a67")
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depends_on("zlib")
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depends_on("perl", type="run")
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depends_on("sse2neon", when="target=aarch64:")
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patch("ksw_for_aarch64.patch", when="target=aarch64:")
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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install("fermi", prefix.bin)
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install("run-fermi.pl", prefix.bin)
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