28 lines
986 B
Python
28 lines
986 B
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Rsem(MakefilePackage):
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"""RSEM is a software package for estimating gene and isoform expression
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levels from RNA-Seq data."""
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homepage = "https://deweylab.github.io/RSEM/"
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url = "https://github.com/deweylab/RSEM/archive/v1.3.0.tar.gz"
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version("1.3.1", sha256="93c749a03ac16e94b1aab94d032d4fd5687d3261316ce943ecb89d3ae3ec2e11")
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version("1.3.0", sha256="ecfbb79c23973e1c4134f05201f4bd89b0caf0ce4ae1ffd7c4ddc329ed4e05d2")
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depends_on("r", type=("build", "run"))
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depends_on("perl", type=("build", "run"))
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depends_on("python", type=("build", "run"))
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depends_on("bowtie")
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depends_on("bowtie2")
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depends_on("star")
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def install(self, spec, prefix):
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make("install", "DESTDIR=%s" % prefix, "prefix=")
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