54 lines
2.0 KiB
Python
54 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import os
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import glob
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class GenemarkEt(Package):
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"""Gene Prediction in Bacteria, archaea, Metagenomes and
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Metatranscriptomes."""
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homepage = "http://topaz.gatech.edu/GeneMark"
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version('4.33', '4ab7d7d3277a685dfb49e11bc5b493c3')
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depends_on('perl', type=('build', 'run'))
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def url_for_version(self, version):
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return "file://{0}/gm_et_linux_64.tar.gz".format(os.getcwd())
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir('gmes_petap'):
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install_tree('lib', prefix.lib)
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files = glob.iglob('*')
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for file in files:
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if os.path.isfile(file):
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install(file, prefix.bin)
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def setup_environment(self, spack_env, run_env):
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run_env.prepend_path('PERL5LIB', prefix.lib)
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