246 lines
9.8 KiB
Python
246 lines
9.8 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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from spack.util.environment import is_system_path
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class Silo(AutotoolsPackage):
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"""Silo is a library for reading and writing a wide variety of scientific
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data to binary, disk files."""
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homepage = "https://wci.llnl.gov/simulation/computer-codes/silo"
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git = "https://github.com/LLNL/Silo.git"
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url = "https://wci.llnl.gov/sites/wci/files/2021-01/silo-4.10.2.tgz"
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maintainers("patrickb314")
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version(
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"4.11.1",
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preferred=True,
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sha256="49eddc00304aa4a19074b099559edbdcaa3532c98df32f99aa62b9ec3ea7cee2",
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url="https://github.com/LLNL/Silo/releases/download/4.11.1/silo-4.11.1.tar.xz",
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)
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version(
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"4.11.1-bsd",
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sha256="51ccfdf3c09dfc98c7858a0a6f08cc3b2a07ee3c4142ee6482ba7b24e314c2aa",
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url="https://github.com/LLNL/Silo/releases/download/4.11.1/silo-4.11.1-bsd.tar.xz",
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)
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version(
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"4.11",
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sha256="ab936c1f4fc158d9fdc4415965f7d9def7f4abeca596fe5a25bd8485654898ac",
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url="https://github.com/LLNL/Silo/releases/download/v4.11/silo-4.11.tar.gz",
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)
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version(
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"4.11-bsd",
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sha256="6d0a85a079d48fcdcc0084ecb5fc4cfdcc64852edee780c60cb244d16f4bc4ec",
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url="https://github.com/LLNL/Silo/releases/download/v4.11/silo-4.11-bsd.tar.gz",
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)
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version(
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"4.10.2",
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sha256="3af87e5f0608a69849c00eb7c73b11f8422fa36903dd14610584506e7f68e638",
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preferred=True,
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)
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version(
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"4.10.2-bsd",
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sha256="4b901dfc1eb4656e83419a6fde15a2f6c6a31df84edfad7f1dc296e01b20140e",
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url="https://wci.llnl.gov/sites/wci/files/2021-01/silo-4.10.2-bsd.tgz",
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)
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version("4.9", sha256="90f3d069963d859c142809cfcb034bc83eb951f61ac02ccb967fc8e8d0409854")
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version("4.8", sha256="c430c1d33fcb9bc136a99ad473d535d6763bd1357b704a915ba7b1081d58fb21")
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depends_on("c", type="build") # generated
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depends_on("cxx", type="build") # generated
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depends_on("fortran", type="build") # generated
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variant("python", default=True, description="Enable Python support")
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variant("fortran", default=True, description="Enable Fortran support")
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variant("shared", default=True, description="Build shared libraries")
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variant("silex", default=False, description="Builds Silex, a GUI for viewing Silo files")
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variant("pic", default=True, description="Produce position-independent code (for shared libs)")
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variant("mpi", default=True, description="Compile with MPI Compatibility")
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variant("hdf5", default=True, description="Support HDF5 for database I/O")
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variant("hzip", default=True, description="Enable hzip support")
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variant("fpzip", default=True, description="Enable fpzip support")
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depends_on("perl", type="build")
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depends_on("m4", type="build", when="+shared")
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depends_on("autoconf", type="build", when="+shared")
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depends_on("autoconf-archive", type="build", when="+shared")
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depends_on("automake", type="build", when="+shared")
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depends_on("libtool", type="build", when="+shared")
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depends_on("mpi", when="+mpi")
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depends_on("hdf5@1.8:1.10", when="@:4.10+hdf5")
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depends_on("hdf5@1.12:", when="@4.11:+hdf5")
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depends_on("qt+gui~framework@4.8:4.9", when="+silex")
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depends_on("libx11", when="+silex")
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# Xmu dependency is required on Ubuntu 18-20
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depends_on("libxmu", when="+silex")
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depends_on("readline")
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depends_on("zlib-api")
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patch("remove-mpiposix.patch", when="@4.8:4.10.2")
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# hdf5 1.10 added an additional field to the H5FD_class_t struct
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patch("H5FD_class_t-terminate.patch", when="@:4.10.2-bsd")
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# H5EPR_SEMI_COLON.patch was fixed in current dev
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patch("H5EPR_SEMI_COLON.patch", when="@:4.11-bsd")
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# Fix missing F77 init, fixed in 4.9
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patch("48-configure-f77.patch", when="@:4.8")
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# The previously used AX_CHECK_COMPILER_FLAGS macro was dropped from
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# autoconf-archive in 2011
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patch("configure-AX_CHECK_COMPILE_FLAG.patch", when="@:4.11-bsd")
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# API changes in hdf5-1.13 cause breakage
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# See https://github.com/LLNL/Silo/pull/260
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patch("hdf5-113.patch", when="@4.11:4.11-bsd +hdf5 ^hdf5@1.13:")
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conflicts("^hdf5@1.13:", when="@:4.10.2-bsd")
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# hzip and fpzip are not available in the BSD releases
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conflicts("+hzip", when="@4.10.2-bsd,4.11-bsd")
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conflicts("+fpzip", when="@4.10.2-bsd,4.11-bsd")
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# zfp include missing
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patch("zfp_error.patch", when="@4.11:4.11-bsd +hdf5")
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# use /usr/bin/env perl for portability
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patch("mkinc-usr-bin-env-perl.patch", when="@:4.11-bsd")
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def flag_handler(self, name, flags):
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spec = self.spec
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if name == "ldflags":
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if "+hdf5" in spec:
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if spec["hdf5"].satisfies("~shared"):
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flags.append("-ldl")
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if "+pic" in spec:
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if name == "cflags":
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flags.append(self.compiler.cc_pic_flag)
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elif name == "cxxflags":
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flags.append(self.compiler.cxx_pic_flag)
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elif name == "fcflags":
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flags.append(self.compiler.fc_pic_flag)
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if name == "cflags" or name == "cxxflags":
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if spec.satisfies("%oneapi"):
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flags.append("-Wno-error=int")
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flags.append("-Wno-error=int-conversion")
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if "+hdf5" in spec:
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# @:4.10 can use up to the 1.10 API
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if "@:4.10" in spec:
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if "@1.10:" in spec["hdf5"]:
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flags.append("-DH5_USE_110_API")
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elif "@1.8:" in spec["hdf5"]:
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# Just in case anytone is trying to force the 1.6 api for
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# some reason
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flags.append("-DH5_USE_18_API")
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else:
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# @4.11: can use newer HDF5 APIs, so this ensures silo is
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# presented with an HDF5 API consistent with the HDF5 version.
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# Use the latest even-numbered API version, i.e. v1.13.1 uses
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# API v1.12
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maj_ver = int(spec["hdf5"].version[0])
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min_ver = int(spec["hdf5"].version[1])
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min_apiver = int(min_ver / 2) * 2
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flags.append("-DH5_USE_{0}{1}_API".format(maj_ver, min_apiver))
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if spec.compiler.name in ["clang", "apple-clang"]:
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flags.append("-Wno-implicit-function-declaration")
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return (flags, None, None)
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@when("%clang@9:")
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def patch(self):
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self.clang_9_patch()
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@when("%apple-clang@11.0.3:")
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def patch(self):
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self.clang_9_patch()
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def clang_9_patch(self):
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# Clang 9 and later include macro definitions in <math.h> that conflict
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# with typedefs DOMAIN and RANGE used in Silo plugins.
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# It looks like the upstream fpzip repo has been fixed, but that change
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# hasn't yet made it into silo.
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# https://github.com/LLNL/fpzip/blob/master/src/pcmap.h
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if str(self.spec.version).endswith("-bsd"):
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# The files below don't exist in the BSD licenced version
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return
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def repl(match):
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# Change macro-like uppercase to title-case.
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return match.group(1).title()
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files_to_filter = [
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"src/fpzip/codec.h",
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"src/fpzip/pcdecoder.inl",
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"src/fpzip/pcencoder.inl",
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"src/fpzip/pcmap.h",
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"src/fpzip/pcmap.inl",
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"src/fpzip/read.cpp",
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"src/fpzip/write.cpp",
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"src/hzip/hzmap.h",
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"src/hzip/hzresidual.h",
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]
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filter_file(r"\b(DOMAIN|RANGE|UNION)\b", repl, *files_to_filter)
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@property
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def force_autoreconf(self):
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# Update autoconf's tests whether libtool supports shared libraries.
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# (Otherwise, shared libraries are always disabled on Darwin.)
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if self.spec.satisfies("@4.11-bsd") or self.spec.satisfies("@4.10.2-bsd"):
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return False
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else:
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return self.spec.satisfies("+shared")
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def configure_args(self):
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spec = self.spec
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config_args = ["--enable-install-lite-headers"]
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config_args.extend(self.enable_or_disable("pythonmodule", variant="python"))
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config_args.extend(self.enable_or_disable("fortran"))
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config_args.extend(self.enable_or_disable("silex"))
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config_args.extend(self.enable_or_disable("shared"))
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config_args.extend(self.enable_or_disable("hzip"))
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config_args.extend(self.enable_or_disable("fpzip"))
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# Do not specify the prefix of zlib if it is in a system directory
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# (see https://github.com/spack/spack/pull/21900).
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zlib_prefix = self.spec["zlib-api"].prefix
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if is_system_path(zlib_prefix):
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config_args.append("--with-zlib=yes")
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else:
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config_args.append("--with-zlib=%s,%s" % (zlib_prefix.include, zlib_prefix.lib))
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if "+hdf5" in spec:
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config_args.append(
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"--with-hdf5=%s,%s" % (spec["hdf5"].prefix.include, spec["hdf5"].prefix.lib)
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)
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if "+silex" in spec:
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x = spec["libx11"]
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config_args.extend(
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[
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"--with-Qt-dir=" + spec["qt"].prefix,
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"--with-Qt-lib=QtGui -lQtCore",
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"--x-includes=" + x.prefix.include,
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"--x-libraries=" + x.prefix.lib,
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]
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)
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if "+mpi" in spec:
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config_args.append("CC=%s" % spec["mpi"].mpicc)
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config_args.append("CXX=%s" % spec["mpi"].mpicxx)
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config_args.append("FC=%s" % spec["mpi"].mpifc)
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return config_args
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@property
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def libs(self):
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shared = "+shared" in self.spec
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return find_libraries("libsilo*", root=self.prefix, shared=shared, recursive=True)
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