42 lines
1.2 KiB
Python
42 lines
1.2 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Tcoffee(MakefilePackage):
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"""T-Coffee is a multiple sequence alignment program."""
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homepage = "http://www.tcoffee.org/"
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git = "https://github.com/cbcrg/tcoffee.git"
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version("2017-08-17", commit="f389b558e91d0f82e7db934d9a79ce285f853a71")
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depends_on("c", type="build") # generated
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depends_on("fortran", type="build") # generated
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depends_on("perl", type=("build", "run"))
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depends_on("blast-plus")
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depends_on("dialign-tx")
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depends_on("viennarna")
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depends_on("clustalw")
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depends_on("tmalign")
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depends_on("muscle")
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depends_on("mafft")
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depends_on("pcma")
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depends_on("poamsa")
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depends_on("probconsrna")
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build_directory = "compile"
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def build(self, spec, prefix):
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with working_dir(self.build_directory):
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make("t_coffee")
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir(self.build_directory):
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install("t_coffee", prefix.bin)
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