spack/var/spack/repos/builtin/packages
Jannek Squar 09d2df690a Add spack package for saga-gis (#10018)
* Add spack package for saga-gis

* Adjusted license header

* Adjust saga-gis package, added fixme comments

* Removed version constraint

* Fixed fixme comment
2018-12-17 19:10:50 -06:00
..
abinit
abyss added bwa runtime dep (#10012) 2018-12-04 17:19:56 -06:00
accfft
ack
activeharmony
adept-utils
adios
adios2
adlbx
adol-c
aegean
aida
albany
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
aluminum Update LBANN generator and bug fix (#9906) 2018-12-10 15:12:43 -08:00
amg
amg2013
amp
ampliconnoise
amrex
amrvis
andi
angsd
ant
antlr
ants
ape
aperture-photometry
apex
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn aragorn: add version 1.2.36 (#9817) 2018-11-13 10:09:14 -06:00
archer
argobots Argobots: added @develop version and +valgrind variant (#9664) 2018-11-14 21:39:35 -06:00
argp-standalone
argtable
arlecore
armadillo
arpack-ng
arrow
ascent
asciidoc
asciidoctor package: add asciidoctor gem (#9905) 2018-11-20 14:32:44 -06:00
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
assimp
astra
astral
astyle
at-spi2-atk
at-spi2-core Add missing gettext dependency to at-spi2-core (#10124) 2018-12-17 14:00:53 -06:00
atk Add latest version of atk (#10125) 2018-12-17 08:48:31 +01:00
atlas
atom-dft
atompaw
atop
augustus
autoconf
autodock-vina
autofact
autogen
automaded
automake
axel
axl correct sha for axl v1.1 (#9907) 2018-11-20 19:28:47 -06:00
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
bbcp
bbmap
bc
bcftools
bcl2fastq2 Disallow bcl2fastq2 on OS X (#9966) 2018-12-04 13:44:15 +01:00
bdftopcf
bdw-gc Add latest version of bdw-gc (#10100) 2018-12-14 21:09:19 -06:00
bear
beast1
beast2
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
biobloom biobloom: new package at 2.2.0 (#10014) 2018-12-04 17:20:24 -06:00
biopieces
bismark
bison
bitmap
blasr
blasr-libcpp
blast-plus
blat
blaze
blis
bliss
blitz
bmake
bml
bohrium
bolt
bookleaf-cpp
boost boost: add 1.69.0 (#10083) 2018-12-12 10:14:47 -06:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
breakdancer
breseq breseq: Add version 0.33.1 (#9889) 2018-11-19 20:42:21 -06:00
brigand
bsseeker2
bucky
bumpversion
busco
butter
bwa
bwtool
byobu
bzip2
c-blosc c-blosc: 1.15.0 (#10009) 2018-12-04 09:10:08 -06:00
c-lime
cabana
caffe
cairo Add latest version of cairo (#10102) 2018-12-14 10:46:52 -06:00
cairomm
caliper
callpath
camellia
candle-benchmarks
cantera Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
canu
cap3
cares
cask
casper
catalyst
catch Fix Catch2 Single Header (#10022) 2018-12-07 18:13:40 -08:00
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo cdo: fix URLs (#10025) 2018-12-06 18:04:50 -06:00
ceed
cereal
ceres-solver
cfitsio
cgal
cgm
cgns CGNS: Add option for 64-bit integers (#9990) 2018-12-04 18:13:49 +01:00
channelflow
charliecloud
charmpp charm++: add version 6.9.0 (#9827) 2018-11-13 10:03:22 -06:00
chatterbug
check
chlorop
chombo
chrpath
circos circos: new package starting at 0.69-6 (#9761) 2018-11-19 20:44:01 -06:00
cistem
citcoms Add GMT, CitcomS, and fstrack packages (#9768) 2018-11-14 23:30:44 -06:00
cityhash
clamr
clapack
claw Add new version 1.2.0 to the package (#9837) 2018-11-13 09:49:08 -06:00
cleaveland4
cleverleaf
clfft
clhep
clingo
cloc cloc: URLs are now consistent (#10068) 2018-12-10 14:28:52 +01:00
cloog
cloverleaf
cloverleaf3d
clp clp: add explicit datadir (#10109) 2018-12-14 16:20:47 -06:00
clustalo
clustalw
cmake cmake: add version 3.13.2 (#10092) 2018-12-13 17:35:58 -06:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
constype
converge
coreutils
corset
cosmomc
cosp2
cp2k CP2K related fixes and update (#9308) 2018-11-20 09:23:01 -08:00
cppad
cppcheck
cppgsl
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cram
cryptopp
cscope
csdp
ctffind
cub
cube
cubelib
cubew
cuda Add CUDA_HOME variable to cuda module file. (#10088) 2018-12-13 08:05:13 +01:00
cuda-memtest
cudnn
cufflinks
cups
curl
cvs
czmq
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
davix
dbcsr dbcsr: minor fixes due to upstream changes (#9799) 2018-11-15 17:10:50 +01:00
dbus
dcmtk
dealii dealii: do not hardcode prefix.include for BLAS/LAPACK (#10008) 2018-12-04 16:55:41 -06:00
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign-tx
diamond DIAMOND: Add version 0.9.23 (#10030) 2018-12-05 19:16:51 -06:00
diffsplice
diffutils
direnv
discovar
discovardenovo
dislin
diy
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen Fix doxygen package (#10021) 2018-12-05 19:02:38 -06:00
dri2proto
dri3proto
dsdp
dsrc
dtcmp make dtcmp an autotools spackage (#10095) 2018-12-14 09:08:57 -06:00
dyninst dyninst: overhaul package.py to CMakePackage (#9871) 2018-11-21 10:47:19 -08:00
ea-utils
easybuild
ebms
eccodes
ecflow New package: ecFlow, a work flow manager. (#9867) 2018-11-18 10:13:31 -06:00
eclipse-gcj-parser
ecp-proxy-apps
ed
editres
eigen
elasticsearch
elemental
elfutils dyninst: overhaul package.py to CMakePackage (#9871) 2018-11-21 10:47:19 -08:00
elk
elpa
elsd Add new packages for ELSD and ELSDc (#10072) 2018-12-13 22:05:24 -06:00
elsdc Add new packages for ELSD and ELSDc (#10072) 2018-12-13 22:05:24 -06:00
emacs
ember
emboss
encodings
energyplus
environment-modules
eospac eospac version bump (#9763) 2018-11-13 10:47:11 -06:00
er
erne erne: new package starting at 2.1.1 (#9676) 2018-11-13 11:02:39 -06:00
es
esmf
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger Add GMT, CitcomS, and fstrack packages (#9768) 2018-11-14 23:30:44 -06:00
exmcutils
exodusii EXODUS: Update version and dependencies (#9971) 2018-12-04 09:48:15 -06:00
exonerate
expat
expect
express
extrae
exuberant-ctags
eztrace eztrace: add new package (#10060) 2018-12-08 01:06:28 -06:00
f18 Add f18 package (#9183) 2018-11-28 14:13:30 -06:00
f90cache
fabtests
falcon
fast-global-file-status
fasta
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg ffmpeg: add version 4.1 (#10015) 2018-12-04 17:19:40 -06:00
fftw
figtree
fimpute
findutils
fio
fish
fixesproto
flac
flang
flann
flash
flatbuffers
flatcc
flecsale flecsale: add missing dependencies and fix flecsi runtime model (#9774) 2018-11-22 12:38:59 -06:00
flecsi
flex
flint
flit
fltk
flux-core flux-core & flux-sched: fix compilation and dependencies (#10049) 2018-12-11 22:34:58 -06:00
flux-sched flux-core & flux-sched: fix compilation and dependencies (#10049) 2018-12-11 22:34:58 -06:00
fluxbox
fmt
foam-extend
folly
font-adobe-75dpi Fix #9673 : build fonts on powerpc architecture (#9683) 2018-11-13 11:01:46 -06:00
font-adobe-100dpi Fix #9673 : build fonts on powerpc architecture (#9683) 2018-11-13 11:01:46 -06:00
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fr-hit
freebayes
freeglut
freetype Add patch to fix windows.h include in freetype (#10075) 2018-12-17 13:00:43 -06:00
freexl libspatialite: new package (#9923) 2018-11-22 13:54:52 -06:00
fseq
fsl
fslsfonts
fstobdf
fstrack Add GMT, CitcomS, and fstrack packages (#9768) 2018-11-14 23:30:44 -06:00
ftgl
funhpc
fyba
gapbs
gapcloser
gapfiller
gasnet
gatk GATK: Add version 4.0.11.0 (#9953) 2018-11-26 14:54:05 -06:00
gaussian
gawk
gblocks
gcc gcc: fix sys_ustat.h patch for gcc 4.8 and 4.9 (#10081) 2018-12-11 22:54:12 -06:00
gccmakedep
gccxml
gconf
gcta
gdal
gdb
gdbm gdbm: add 1.18.1 (#9757) 2018-11-13 10:50:30 -06:00
gdk-pixbuf Add latest version of gdk-pixbuf (#10126) 2018-12-17 13:04:40 -06:00
gdl GDL: python integration fixes (#9936) 2018-12-17 12:47:16 -06:00
geant4
gearshifft
gemmlowp
genemark-et
genomefinisher
genometools
geopm
geos
gettext
gflags
ghost
ghostscript Add latest version of ghostscript (#10123) 2018-12-17 13:04:16 -06:00
ghostscript-fonts
giflib
git git: add version 2.20.1 (#10130) 2018-12-17 17:36:57 -06:00
git-imerge
git-lfs
gl2ps
glew
glfmultiples
glib glib: disable SELinux explicitly (#9956) 2018-11-28 10:06:17 +01:00
glibmm
glimmer
glm
global
globalarrays
globus-toolkit globus-toolkit: add missing pkgconfig dependency (#9775) 2018-11-15 17:54:22 +01:00
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap
gmime
gmodel
gmp
gmsh
gmt Add GMT, CitcomS, and fstrack packages (#9768) 2018-11-14 23:30:44 -06:00
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go go: add 1.11.2 (#9948) 2018-11-26 11:33:55 -06:00
go-bootstrap
gobject-introspection
googletest Updates to Google Test: (#10079) 2018-12-14 13:23:08 -06:00
gotcha
gource
gperf
gperftools
gplates
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
grass
grib-api
grnboost
groff
gromacs gromacs: added 2018.[34] (#9828) 2018-11-13 10:02:59 -06:00
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus package/gtkplus: disable gtk-docs (#9897) 2018-11-19 20:38:34 -06:00
gts
guidance
guile
gurobi
h5hut
h5part
h5utils
h5z-zfp Explicitly set FC= empty for non-fortran builds (#9898) 2018-11-19 20:38:06 -06:00
hacckernels
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz package/harfbuzz: disable building of gtk-docs, add new version (#9891) 2018-11-19 20:42:08 -06:00
harminv
hc Add GMT, CitcomS, and fstrack packages (#9768) 2018-11-14 23:30:44 -06:00
hdf
hdf5 hdf5: add version 1.8.21 (#9952) 2018-11-26 12:56:44 -06:00
hdf5-blosc
help2man
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea
hmmer
homer
hoomd-blue
hpccg
hpctoolkit hpctoolkit: overhaul to use spack dependencies (#9946) 2018-11-30 18:11:12 -08:00
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hunspell
hwloc Hwloc and numactl updates (#9987) 2018-12-05 10:26:53 +01:00
hybpiper new version (#9752) 2018-11-13 10:53:47 -06:00
hydra
hydrogen Update LBANN generator and bug fix (#9906) 2018-12-10 15:12:43 -08:00
hypre hypre: patch only @2.13.0 and @2.14.0 on darwin (#9832) 2018-11-13 09:54:09 -06:00
i3
ibmisc
iceauth
icedtea
icet
ico
icu4c
id3lib
idba
igraph
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel intel-parallel-studio: add missing updates to 2019.1 (#9941) 2018-11-24 15:44:57 -06:00
intel-daal Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899) 2018-11-20 09:30:53 -06:00
intel-gpu-tools
intel-ipp Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899) 2018-11-20 09:30:53 -06:00
intel-mkl Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899) 2018-11-20 09:30:53 -06:00
intel-mkl-dnn
intel-mpi Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899) 2018-11-20 09:30:53 -06:00
intel-parallel-studio intel-parallel-studio: add missing updates to 2019.1 (#9941) 2018-11-24 15:44:57 -06:00
intel-tbb Add 2019.1 and 2018.4 version of the Intel performance libraries. (#9899) 2018-11-20 09:30:53 -06:00
intel-xed
intltool
ior
iozone
iperf2
iperf3
ipopt
isaac
isaac-server
isl
itstool
itsx
jackcess
jags
jansson
jasper
jbigkit
jchronoss
jdk
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kdiff3 Expand dependency on qt to allow qt4 (#9964) 2018-12-04 13:37:37 +01:00
kealib
kentutils
kibana
kim-api
kmergenie
kokkos
kraken
krb5 krb5: add missing bison dependency for yacc (#9778) 2018-11-15 17:54:51 +01:00
krims
kripke
kvasir-mpl
kvtree
laghos
lammps lammps: add new stable version (#10086) 2018-12-12 11:08:59 -06:00
last
lastz
latte Fixing problems with lammps dependencies voropp and latte (#9909) 2018-11-27 16:55:21 -07:00
launchmon
lazyten
lbann Update LBANN generator and bug fix (#9906) 2018-12-10 15:12:43 -08:00
lbxproxy
lbzip2
lcals
lcms
ldc
ldc-bootstrap
legion
lemon LEMON: Create new package (#10077) 2018-12-11 23:08:45 -06:00
leveldb
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops Add latest version of libatomic-ops (#10099) 2018-12-14 21:09:04 -06:00
libbeagle
libbeato
libbsd Add latest version of libbsd (#10121) 2018-12-17 13:03:43 -06:00
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libev
libevent libevent: add 2.1.8 and 2.0.22 (#9777) 2018-11-13 09:51:26 -06:00
libevpath
libfabric
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libiberty
libice
libiconv
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmatheval
libmaxminddb
libmesh
libmng
libmongoc libmongoc: updated versions (#9877) 2018-11-18 20:35:24 -06:00
libmonitor
libnbc
libnl
libnova
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libpng
libpsl
libpthread-stubs
libquo
librom
libsharp
libshm
libsigcpp Add latest version of libsigcpp (#10103) 2018-12-14 21:09:33 -06:00
libsigsegv
libsm
libsodium
libspatialindex
libspatialite libspatialite: new package (#9923) 2018-11-22 13:54:52 -06:00
libsplash
libssh libssh: fix fetching and add 0.8.5 (#9779) 2018-11-13 09:51:57 -06:00
libssh2
libsvm
libszip
libtermkey
libtiff
libtool
libunistring
libunwind libunwind: add version for current snapshot (#9770) 2018-11-14 18:56:52 -06:00
libuuid
libuv
libvorbis
libvterm Added missing libtool dependencies to libvterm and unibilium (#10007) 2018-12-04 13:01:37 +01:00
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc CP2K related fixes and update (#9308) 2018-11-20 09:23:01 -08:00
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp Add missing libbsd dependency to libxdmcp (#10122) 2018-12-17 13:04:00 -06:00
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt Add latest version of libxslt (#10098) 2018-12-14 10:47:23 -06:00
libxsmm CP2K related fixes and update (#9308) 2018-11-20 09:23:01 -08:00
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
lighttpd
likwid
linkphase3
linux-headers
listres
llvm
llvm-openmp-ompt
lmdb lmdb: add 0.9.22 (#9759) 2018-11-13 10:49:24 -06:00
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db man-db: add missing gdbm dependency (#9751) 2018-11-13 09:41:43 -06:00
manta
maq
mariadb
masa
masurca
matio MATIO: New versions (#9993) 2018-12-04 08:53:15 -06:00
matlab
maven
maverick
mawk
mbedtls
mc mc: add version 4.8.21 (#9943) 2018-11-24 17:42:46 -06:00
mcl
mdtest
med
meep
mefit
megahit
memaxes
meme
memkind
meraculous
mercurial
mercury Package: Mercury (#9903) 2018-11-20 11:14:30 -06:00
mesa
mesa-glu
meshkit
meson Add latest version of meson (#10104) 2018-12-14 09:10:55 -06:00
mesquite
metabat metabat: Add version 2.11.2 (#9950) 2018-11-26 11:32:14 -06:00
metaphysicl
metis metis: Fix issues with gcc6 and misleading indentation (#10058) 2018-12-09 13:08:38 -06:00
mfem
microbiomeutil
migrate
minced minced: Add version 0.1.6 (#9951) 2018-11-26 14:22:17 -06:00
mindthegap
miniaero
miniamr
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2 minimap2: Add versions 2.10 and 2.14 (#9818) 2018-11-13 10:08:42 -06:00
minimd
miniqmc
minisign
minismac2d
minitri
minivite
minixyce
minuit
mira
mirdeep2
mitofates
mitos
mixcr mixcr: Added a new package for MiXCR. (#9864) 2018-11-17 21:19:04 -06:00
mkfontdir
mkfontscale
mlhka
moab mofem: add new releases and minor changes (#9138) 2018-12-10 14:33:31 +01:00
modern-wheel
mofem-cephas mofem: add new releases and minor changes (#9138) 2018-12-10 14:33:31 +01:00
mofem-fracture-module mofem: add new releases and minor changes (#9138) 2018-12-10 14:33:31 +01:00
mofem-minimal-surface-equation mofem: add new releases and minor changes (#9138) 2018-12-10 14:33:31 +01:00
mofem-users-modules mofem: add new releases and minor changes (#9138) 2018-12-10 14:33:31 +01:00
molcas
mongo-cxx-driver new package: mongo-cxx-driver (#9880) 2018-11-19 13:19:19 -06:00
mono
mosh
mothur
motif
motioncor2
mount-point-attributes
mozjs
mpark-variant
mpc
mpe2
mpest
mpfr
mpibash
mpiblast
mpich Add MPICH version 3.3 (#9915) 2018-11-21 14:42:52 -06:00
mpifileutils mpifileutils: add v0.8.1 (#9346) 2018-11-19 20:48:50 -06:00
mpilander
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
msmc
multitail
multitime multitime: new package (#9929) 2018-11-22 12:39:51 -06:00
multiverso
mummer
mumps
munge munge: update versions and url format to reflect switch to .xz format… (#9916) 2018-11-22 13:13:40 -06:00
muparser
muscle
muse
muster
mvapich2
mxml
mxnet
nag
nalu
nalu-wind
namd
nano
nanoflann
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses
ncview
ndiff
nek5000
nekbone
nekcem
nektar
neovim
nest
netcdf NETCDF: Add new versions and update url (#9970) 2018-12-04 15:03:25 +01:00
netcdf-cxx
netcdf-cxx4
netcdf-fortran netcdf-fortran: add LDFLAGS to fix contents of libnetcdff.la. (#9647) 2018-11-14 09:40:16 -06:00
netgauge
netgen
netlib-lapack
netlib-scalapack
netlib-xblas
nettle
neuron
nextflow
nfft
nghttp2
nginx nginx: add 1.15.6 (#9780) 2018-11-13 10:25:00 -06:00
ngmlr
ninja
ninja-fortran
nlohmann-json
nlopt
nmap
nnvm
node-js node-js: add 10.13.0 and 11.1.0 (#9781) 2018-11-13 11:39:52 -06:00
notmuch
npb
npm
npth
nspr
numactl Hwloc and numactl updates (#9987) 2018-12-05 10:26:53 +01:00
numdiff
nut
nvptx-tools
nwchem
nyancat New Package: Nyancat (#9819) 2018-11-13 10:07:54 -06:00
ocaml
occa
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
of-precice
omega-h
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
opam
opari2
openbabel
openblas openblas: add version 0.3.4 (#10016) 2018-12-05 08:41:58 -06:00
opencoarrays
opencv
openexr
openfast
openfoam-com ENH: fixes and updates for openfoam-com build (#10065) 2018-12-17 12:58:09 -06:00
openfoam-org
openfst
opengl
openglu
openimageio
openjpeg
openmc
openmpi OpenMPI: adding static libraries with slurm support for latest versions. (#10055) 2018-12-08 13:49:09 +01:00
opennurbs
openpmd-api
openscenegraph
openslide
openspeedshop
openspeedshop-utils
openssh openssh: add 7.9p1 (#9782) 2018-11-13 09:41:17 -06:00
openssl openssl: make 1.1.1 the default version (#9836) 2018-11-19 20:46:38 -06:00
opium
optional-lite
opus
orca
orfm
orthofinder
orthomcl
osu-micro-benchmarks
otf
otf2
p4est p4est: fix a typo (#9932) 2018-11-24 17:45:04 -06:00
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
paml
panda
pandaseq
pango package/pango: disable gtk-docs (#9896) 2018-11-19 20:38:52 -06:00
pangomm
papi
papyrus
paradiseo
parallel
parallel-netcdf PNETCDF: Update with current versions (#9982) 2018-12-04 08:31:41 -06:00
paraver
paraview Adding Paraview version 5.6. (#9788) 2018-11-13 09:36:18 -06:00
parmetis
parmgridgen
parquet
parsimonator
parsplice
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite pbsuite: pythonpath should be prepended not set (#10113) 2018-12-14 18:12:51 -08:00
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
perl
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-contextual-return
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-extutils-depends
perl-extutils-helpers added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-extutils-installpaths added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram
perl-graph
perl-graph-readwrite
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-bezier added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-math-vecstat added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-module-build
perl-module-build-tiny added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay perl-net-ssleay: fix build (#9783) 2018-11-13 11:30:04 -06:00
perl-number-format added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-regexp-common added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-scalar-list-utils added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-scalar-util-numeric
perl-set-intspan added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-soap-lite
perl-star-fusion
perl-statistics-basic added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format added several new perl modules (#9760) 2018-11-19 20:44:44 -06:00
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml-libyaml
petsc petsc: when petsc is built with fortran [default in spack] its best to use hdf5+fortran (#9986) 2018-12-04 13:32:30 +01:00
pexsi
pfft
pflotran
pfunit pfunit: add mpi-test patch (#9387) 2018-12-05 06:15:16 -07:00
pgdspider
pgi pgi: Add checksum for PGI 18.10 (#9985) 2018-12-04 13:12:20 +01:00
pgmath
phantompeakqualtools
phast
phasta
phist packages/phist: new version 1.7.5 (#10120) 2018-12-16 13:35:44 -06:00
phylip
phyluce
picard
picsar
picsarlite
pidx
pigz
pilon
pindel
piranha
pism
pixman
pkg-config
pkgconf
planck-likelihood
plasma Add PLASMA version 18.11.0 and Lua variant (#9689) 2018-11-28 16:59:05 -06:00
platypus
plink
plplot
plumed
pmgr-collective
pmix
pnfft
pngwriter
pnmpi
poamsa
pocl
polymake
poppler Add latest version of poppler (#10101) 2018-12-14 10:47:07 -06:00
poppler-data
porta
portage
portcullis
postgresql
ppl
pplacer
prank
precice
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
protobuf Updated protobuf and py-protobuf to version 3.6.1 (#9536) 2018-11-15 16:59:04 +01:00
proxymngr
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi pumi: shared variant (#10057) 2018-12-08 01:08:58 -06:00
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-adios
py-affine
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-atomicwrites
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bitarray
py-bitstring
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-breakseq2
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi py-cffi: add missing pkgconfig dependency (#9784) 2018-11-15 19:38:52 +01:00
py-chardet
py-checkm-genome
py-cheetah
py-click
py-click-plugins py-geopandas: New package. (#9919) 2018-11-24 15:44:44 -06:00
py-cligj
py-cloudpickle
py-cogent
py-colorama
py-colormath
py-configparser Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-cryptography py-cryptography: add 2.3.1 (#9785) 2018-11-15 18:27:29 +01:00
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython py-cython: add new versions (#9846) 2018-11-16 13:20:34 -08:00
py-dask
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-descartes py-geopandas: New package. (#9919) 2018-11-24 15:44:44 -06:00
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34 Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-filelock
py-fiona py-geopandas: New package. (#9919) 2018-11-24 15:44:44 -06:00
py-fiscalyear
py-flake8 Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-fn
py-fparser
py-funcsigs
py-functools32
py-future Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-futures
py-fypp
py-gdbgui
py-genders
py-genshi
py-geopandas Rename py-proj to py-pyproj, consistent with Spack's current naming conventions (#9962) 2018-11-27 16:31:30 -06:00
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5glance
py-h5py
py-hdfs
py-hepdata-validator
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jprops
py-jpype
py-jsonschema Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-junit-xml
py-jupyter-client
py-jupyter-console New versions for a few python modules (#9969) 2018-11-28 21:44:15 -06:00
py-jupyter-core New versions for a few python modules (#9969) 2018-11-28 21:44:15 -06:00
py-jupyter-notebook
py-keras
py-kiwisolver
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-lxml New versions for a few python modules (#9969) 2018-11-28 21:44:15 -06:00
py-lzstring
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-mappy
py-markdown
py-markupsafe
py-matplotlib
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-merlin Add GMT, CitcomS, and fstrack packages (#9768) 2018-11-14 23:30:44 -06:00
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mock
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py
py-mpmath
py-multiprocess
py-multiqc
py-munch py-geopandas: New package. (#9919) 2018-11-24 15:44:44 -06:00
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr
py-numexpr3
py-numpy
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-ordereddict
py-oset
py-owslib Rename py-proj to py-pyproj, consistent with Spack's current naming conventions (#9962) 2018-11-27 16:31:30 -06:00
py-packaging
py-palettable
py-pandas
py-paramiko
py-partd
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect New versions for a few python modules (#9969) 2018-11-28 21:44:15 -06:00
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow
py-pint Provide a new spackage for py-pint. (#9991) 2018-12-04 08:58:11 -06:00
py-pip new version 18.1 for py-pip (#9938) 2018-11-23 18:09:20 -06:00
py-pipits
py-pkgconfig
py-plotly
py-pluggy
py-ply py-ply: fix download url (#9862) 2018-11-16 13:12:05 -08:00
py-pmw
py-poster
py-pox
py-ppft
py-prettytable
py-progress
py-projectq
py-prompt-toolkit
py-protobuf Updated protobuf and py-protobuf to version 3.6.1 (#9536) 2018-11-15 16:59:04 +01:00
py-psutil
py-psyclone
py-psycopg2 py-psycopg2: new package (#9926) 2018-11-24 17:45:16 -06:00
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyarrow
py-pyasn1
py-pybigwig
py-pybind11
py-pybtex Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-pybtex-docutils
py-pycairo
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyepsg
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject py-pygobject: add missing pkgconfig dependency (#9955) 2018-11-26 21:41:44 -06:00
py-pygpu
py-pygresql py-pygresql: new package (#9922) 2018-11-24 17:45:27 -06:00
py-pygtk
py-pylint
py-pymatgen
py-pyminifier
py-pymol
py-pympler
py-pymysql
py-pynn
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyproj Rename py-proj to py-pyproj, consistent with Spack's current naming conventions (#9962) 2018-11-27 16:31:30 -06:00
py-pyqi
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysocks
py-pyspark
py-pysqlite
py-pytables New versions for a few python modules (#9969) 2018-11-28 21:44:15 -06:00
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia Add GMT, CitcomS, and fstrack packages (#9768) 2018-11-14 23:30:44 -06:00
py-python-daemon
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-levenshtein
py-python-socketio
py-pythonqwt
py-pytorch
py-pytz
py-pyutilib
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-readme-renderer
py-regex
py-reportlab
py-requests
py-requests-toolbelt
py-restview
py-rope Adding patch to remove unicode character from pyrope readme file (#9988) 2018-12-06 11:11:23 +01:00
py-rpy2
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn Package/py scikit learn (#9843) 2018-11-24 19:03:30 -06:00
py-scipy
py-seaborn
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-sip
py-six
py-slepc4py
py-slurm-pipeline Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-sncosmo
py-snowballstemmer
py-snuggs
py-spectra
py-spefile
py-spglib
py-sphinx Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado New versions for a few python modules (#9969) 2018-11-28 21:44:15 -06:00
py-testinfra
py-tetoolkit
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-tornado Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-tqdm
py-traceback2
py-traitlets Uncomment dependencies previously disallowed by concretizer (#9942) 2018-11-26 09:11:16 +01:00
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-weblogo
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xdot
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt
py-zmq New versions for a few python modules (#9969) 2018-11-28 21:44:15 -06:00
py-zope-event
py-zope-interface
pythia6
python
qbank
qbox
qca qca: new package (#9924) 2018-11-22 12:45:42 -06:00
qhull
qjson qjson: new package (#9925) 2018-11-22 12:45:17 -06:00
qmcpack
qmd-progress
qorts
qrupdate
qt qt: fix openssl dependency for older versions (#10106) 2018-12-14 11:11:31 -06:00
qt-creator
qtgraph
qthreads
quantum-espresso Quantum ESPRESSO update - Nov 2018 (#9853) 2018-12-06 10:57:52 +01:00
quinoa
qwt
r
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm r-compositions: new package, including its dependencies (#9921) 2018-11-23 18:06:57 -06:00
r-bbmisc
r-beanplot
r-bh
r-biasedurn
r-bindr added r-bindr v 0.1.1 (#9717) 2018-11-13 10:58:31 -06:00
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling r-blockmodeling: new package at 0.3.1 (#10044) 2018-12-07 11:24:43 -06:00
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-cairo r-cairo: new package (#9794) 2018-11-14 21:44:55 -06:00
r-callr
r-car
r-caret
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-combinat r-combinat: new package at 0.0-8 (#9764) 2018-11-13 10:41:54 -06:00
r-complexheatmap
r-compositions r-compositions: new package, including its dependencies (#9921) 2018-11-23 18:06:57 -06:00
r-convevol
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk r-crosstalk: remove unnecessary constraint (#9892) 2018-11-19 20:41:41 -06:00
r-ctc
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree r-diversitree: new package (#9893) 2018-11-19 20:41:01 -06:00
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger
r-ellipse
r-energy r-compositions: new package, including its dependencies (#9921) 2018-11-23 18:06:57 -06:00
r-ensembldb
r-ergm
r-evaluate
r-expint r-expint: new package at 0.1-5 (#10043) 2018-12-07 18:21:40 -08:00
r-expm
r-factoextra
r-factominer
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-geneplotter
r-genie3
r-genomeinfodb
r-genomeinfodbdata r-genomeinfodbdata: url fix (#9732) 2018-11-13 10:57:04 -06:00
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa new package: r-gensa (starting at 1.1.7) (#9858) 2018-11-16 13:13:48 -08:00
r-geomorph r-geomorph: new version (#9890) 2018-11-19 20:41:19 -06:00
r-geoquery
r-geor r-geor: new package, and a couple of its dependencies (#9920) 2018-11-24 14:21:54 -06:00
r-geosphere
r-getopt r-optparse: new package (#9967) 2018-12-04 13:20:08 +01:00
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper r-multitaper: new package at 1.0-14 (#10110) 2018-12-15 20:08:33 +01:00
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-optparse r-optparse: new package (#9967) 2018-12-04 13:20:08 +01:00
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree r-paleotree: new package (#9895) 2018-11-19 20:39:42 -06:00
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-phytools r-phytools: new package at 0.6-60 (#9766) 2018-11-14 21:39:05 -06:00
r-picante
r-pkgconfig
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-popgenome r-popgenome: new package at 2.6.1 (#10108) 2018-12-15 08:44:20 -06:00
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomfields r-geor: new package, and a couple of its dependencies (#9920) 2018-11-24 14:21:54 -06:00
r-randomfieldsutils r-geor: new package, and a couple of its dependencies (#9920) 2018-11-24 14:21:54 -06:00
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl r-rgl: update url, add new version (#9796) 2018-11-16 15:26:09 +01:00
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-rots
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrpp r-rrpp: new package (#9887) 2018-11-19 20:42:45 -06:00
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spdep
r-speedglm
r-spem
r-splancs r-geor: new package, and a couple of its dependencies (#9920) 2018-11-24 14:21:54 -06:00
r-splitstackshape
r-sqldf
r-squash
r-sseq r-sseq: new package at 1.20.0 (#10042) 2018-12-07 11:24:55 -06:00
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-webshot
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial r-xnomial: new package at 1.0.4 (#10111) 2018-12-15 08:43:08 -06:00
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
range-v3
rankstr
rapidjson
ravel
raxml
ray
rclone
rdma-core
rdp-classifier
re2c
readfq
readline
recordproto
redset
redundans
regcm
relion
rempi
rename
rendercheck
renderproto
repeatmasker
resourceproto
revbayes
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rngstreams
rocksdb Added RocksDB package (#10084) 2018-12-17 17:36:45 -06:00
rockstar
root
rose
ross
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust Rewrite Rust package (#9998) 2018-12-05 20:15:45 +01:00
rust-bindgen
sabre
saga-gis Add spack package for saga-gis (#10018) 2018-12-17 19:10:50 -06:00
sailfish
salmon
sambamba
samblaster
samrai
samtools samtools: make zlib/bzip2 dependencies unconditional (#9866) 2018-11-19 10:36:48 -08:00
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scallop scallop: new package at 0.10.3 (#10041) 2018-12-07 17:39:07 -08:00
scalpel
scan-for-matches
scons
scorec-core
scorep
scotch
scr added sha256 for scr v1.2.0-2 (#10082) 2018-12-11 22:56:23 -06:00
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sdsl-lite sdsl-lite: new package at 2.1.1 (#10013) 2018-12-04 17:20:10 -06:00
seacas SEACAS: Add preliminary support for seacas package (#9972) 2018-12-17 12:57:31 -06:00
sed
sentieon-genomics
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simplemoc
simul
simulationio
singularity
skilion-onedrive
sleef
slepc
slurm
smalt
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox
spades Spades: Add version 3.13.0 (#10033) 2018-12-07 11:24:17 -06:00
span-lite
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spm Feature/spm (#10053) 2018-12-13 12:43:45 -06:00
spot
sqlite sqlite: add 3.25.3 (#9756) 2018-11-13 10:50:54 -06:00
sqlitebrowser
squid
sra-toolkit
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stc
steps
stow
strace
stream
strelka
stress
string-view-lite
stringtie stringtie: add version 1.3.4d (#9791) 2018-11-13 10:20:30 -06:00
structure
strumpack
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials
superlu
superlu-dist superlu-dist: update v6.1.0 checksum (#10078) 2018-12-13 09:05:47 -06:00
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swiftsim
swig
symengine
sympol
sz
tabix
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian
tassel
tau
tcl
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
templight
templight-tools
tetgen
tethex
texinfo
texlive
tfel new package: add support for the tfel package (#9930) 2018-11-27 07:16:55 +01:00
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
tig
time new package: time (#9842) 2018-11-14 09:38:37 -06:00
tinyxml
tinyxml2
tioga
tk
tldd
tmalign
tmhmm
tmux Add tmux@2.8 (#10010) 2018-12-04 08:37:09 -06:00
tmuxinator
tophat
tppred
tracer TraceR: add release tag/version (#10054) 2018-12-08 01:09:48 -06:00
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub
trf trf: add version 4.07b and install fixes (#10093) 2018-12-13 12:42:26 -06:00
triangle
trilinos
trimal
trimgalore
trimmomatic Trimmomatic: Add version 0.38 (#9883) 2018-11-19 15:56:49 -06:00
trinity
trinotate Packages/trinotate fix (#9745) 2018-11-13 10:55:59 -06:00
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx Add UCX v1.4.0 (#9881) 2018-11-19 13:20:22 -06:00
udunits2
ufo-core
ufo-filters
umpire
unblur
uncrustify
unibilium Added missing libtool dependencies to libvterm and unibilium (#10007) 2018-12-04 13:01:37 +01:00
unifycr
unison
units
unixodbc
unuran
unzip
usearch
util-linux
util-macros
uuid
valgrind
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
veloc
velvet
verilator
verrou Fix and update verrou (#9847) 2018-11-15 10:22:13 -06:00
videoproto
viennarna
viewres
vim
virtualgl
visit
vizglow
vmatch
voropp Fixing problems with lammps dependencies voropp and latte (#9909) 2018-11-27 16:55:21 -07:00
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt vt package: add zlib dependency (#9870) 2018-11-16 12:52:15 -08:00
vtk
vtkh
vtkm Remove openmp version guard in vtkm and add precision options (#10005) 2018-12-04 11:53:17 -08:00
wannier90
warpx
wcslib
wget
wgsim
windowswmproto
wireshark
workrave
wt wt: add missing pkgconfig dependency and fix boost version range (#9835) 2018-11-13 09:53:44 -06:00
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
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zlib remove spurious print in zlib patch method 2018-12-06 15:48:23 -08:00
zoltan zoltan: rely on MPI wrappers instead of guessing MPI libraries (#8986) 2018-12-17 12:45:49 -06:00
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