spack/var/spack/repos/builtin/packages/denovogear/stream-open.patch

13 lines
526 B
Diff

diff -ru spack-src.org/src/dng-dnm.cc spack-src/src/dng-dnm.cc
--- spack-src.org/src/dng-dnm.cc 2015-04-21 09:16:59.000000000 +0900
+++ spack-src/src/dng-dnm.cc 2019-10-02 15:08:28.892042247 +0900
@@ -161,7 +161,7 @@
int writeVCFHeader(std::ofstream& fo_vcf, string op_vcf_f, string bcf_file, string ped_file, string sample)
{
fo_vcf.open(op_vcf_f.c_str());
- if(fo_vcf == NULL) {
+ if(fo_vcf.fail()) {
cerr<<"Unable to open vcf file for writing output. Exiting !"<<endl;
}
fo_vcf<<"##fileformat=VCFv4.1\n";