35 lines
1.2 KiB
Python
35 lines
1.2 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import os
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class SspaceLongread(Package):
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"""SSPACE-LongRead is a stand-alone program for scaffolding pre-assembled
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contigs using long reads
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Note: A manual download is required for SSPACE-LongRead.
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Spack will search your current directory for the download file.
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Alternatively, add this file to a mirror so that Spack can find it.
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For instructions on how to set up a mirror, see
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http://spack.readthedocs.io/en/latest/mirrors.html"""
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homepage = "https://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE-longread"
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manual_download = True
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version('1.1', '0bb5d8603d7ead4ff1596135a520cc26')
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depends_on('perl', type=('build', 'run'))
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def url_for_version(self, version):
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return "file://{0}/40SSPACE-LongRead_v{1}.tar.gz".format(
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os.getcwd(), version.dashed)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('blasr', prefix.bin)
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install('SSPACE-LongRead.pl', prefix.bin)
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