..
abinit
abyss
accfft
ace
ack
ack: Fix install modifying download cache ( #13836 )
2019-11-24 17:33:49 -06:00
activeharmony
acts-core
ACTS v0.11.0 + adding maintainer ( #13880 )
2019-11-25 14:33:16 +01:00
adept-utils
adiak
adios
adios2
adlbx
adol-c
aegean
aida
alan
albany
albert
alglib
allpaths-lg
alquimia
xsdk@0.5.0 ( #13682 )
2019-11-14 16:36:51 -06:00
alsa-lib
aluminum
Updated versions numbers for Aluminum and Hydrogen. ( #13814 )
2019-11-20 19:04:01 -07:00
amber
amg
amg2013
aml
amp
ampliconnoise
ampliconnoise: Change return type of function. ( #13766 )
2019-11-20 16:03:51 -07:00
amrex
amrvis
andi
angsd
ant
antlr
ants
aoflagger
aom
ape
aperture-photometry
apex
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
arborx
archer
argobots
update Argobots and BOLT ( #13765 )
2019-11-20 19:04:46 -07:00
argp-standalone
argtable
aria2
arm-forge
armadillo
arpack-ng
arrow
(py)arrow: new versions ( #13561 )
2019-11-07 11:52:29 -06:00
asagi
ascent
update to add ascent 0.5.0 release ( #13709 )
2019-11-17 12:36:14 -07:00
asciidoc
asciidoctor
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
assimp
astra
astral
astyle
at-spi2-atk
at-spi2-core
athena
athena, mvapich2, spectrum-mpi: use new API to setup environment ( #13677 )
2019-11-12 11:44:12 -06:00
atk
atlas
atom-dft
atompaw
atop
attr
augustus
autoconf
autodock-vina
autofact
autogen
automaded
automake
awscli
axel
axl
bam-readcount
bam-readcount: a new package. ( #13628 )
2019-11-07 10:00:43 -06:00
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
Add latest version of bazel ( #13813 )
2019-11-25 11:59:12 -06:00
bbcp
bbmap
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast1
beast2
beast-tracer
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
biobloom
biopieces
bismark
bison
Mark conflicts between newer packages and Intel 14 compilers ( #13729 )
2019-11-14 16:27:36 -06:00
bitmap
blasr
blasr-libcpp
blast2go
blast-legacy
blast-plus
blat
blaze
blis
bliss
blitz
bmake
bmi
bml
bohrium
bolt
update Argobots and BOLT ( #13765 )
2019-11-20 19:04:46 -07:00
bookleaf-cpp
boost
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bpp-suite: Clarify 'isinf' function's namespace. ( #13777 )
2019-11-20 15:52:44 -07:00
bracken
braker
branson
breakdancer
breseq
bridger
brigand
brotli
bsseeker2
bucky
bumpversion
busco
butter
butterflypack
Update ButterflyPACK and STRUMPACK ( #13661 )
2019-11-11 12:24:13 -06:00
bwa
bwtool
byobu
bzip2
c-ares
Add c-ares 1.15.0 ( #13809 )
2019-11-20 15:20:08 -07:00
c-blosc
c-blosc2
c-lime
cabana
caffe
cairo
cairomm
caliper
Add Caliper v2.2.0 and v2.1.1 ( #13723 )
2019-11-13 18:11:09 -06:00
callpath
camellia
camx
candle-benchmarks
cantera
canu
cap3
capstone
cardioid
casacore
cask
casper
catalyst
catch2
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-krell: add rpcsvc-proto and libtirpc dependency. ( #13800 )
2019-11-21 11:38:09 -07:00
cbtf-lanl
ccache
ccfits
ccs-qcd
cctools
cctools: fix python related error. ( #13802 )
2019-11-25 12:57:09 -06:00
cdbfasta
cdd
cddlib
cdecimal
cdhit
cdo
new CDO release 1.9.8 ( #13674 )
2019-11-11 12:52:06 -06:00
ceed
cereal
ceres-solver
cfitsio
cgal
cgdb
cgm
cgns
channelflow
chapel
charliecloud
charmpp
chatterbug
check
chgcentre
chill
chlorop
chombo
chrpath
cinch
circos
cistem
citcoms
cityhash
clamav
clamr
clapack
clara
Added package for Clara command line parser ( #13763 )
2019-11-20 00:12:43 -07:00
claw
cleaveland4
cleverleaf
clfft
clhep
clingo
cln
cloc
cloog
cloverleaf
cloverleaf3d
clp
clustal-omega
clustalw
cmake
Mark conflicts between newer packages and Intel 14 compilers ( #13729 )
2019-11-14 16:27:36 -06:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
update to add ascent 0.5.0 release ( #13709 )
2019-11-17 12:36:14 -07:00
connect-proxy
constype
converge
coreutils
corset
cosmomc
cosp2
cotter
cowsay
cp2k
cppad
cppcheck
cppgsl
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cquery
cram
cromwell
cromwell-womtool
cryptopp
cryptsetup
cscope
csdp
ctffind
cub
cube
cubelib
cubew
cuda
add package cuda@10.2.89 ( #13819 )
2019-11-25 13:23:48 -06:00
cuda-memtest
cudnn
cuDNN: add new versions ( #13668 )
2019-11-11 12:53:26 -06:00
cufflinks
cups
curl
cvs
cxxopts
czmq
dakota
daligner
damageproto
damaris
damselfly
damselfly: Add mpi dependency. ( #13694 )
2019-11-12 11:58:11 -06:00
darshan-runtime
darshan-util
dash
datamash
dataspaces
Removed github repository and develop version from dataspaces package as it is no longer present/accessible. ( #13740 )
2019-11-14 16:20:13 -06:00
dateutils
davix
dbcsr
dbus
dcmtk
dd4hep
dealii
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign
dialign-tx
diamond
diffsplice
diffutils
dimemas
direnv
discovar
discovardenovo
dislin
diy
dlpack
dmd
dmlc-core
dmtcp
Update DMTCP package to v2.6.0 ( #13739 )
2019-11-14 16:20:44 -06:00
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
doxygen: added missing dependencies to the package ( #10589 )
2019-11-21 15:30:31 +01:00
draco
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst
dysco
ea-utils
easybuild
ebms
eccodes
ecflow
eclipse-gcj-parser
ecos
ecp-io-sdk
ecp-proxy-apps
ecp-viz-sdk
ed
editline
editres
eem
eigen
elasticsearch
elemental
elfutils
elk
elmerfem
elmer-fem: add devel branch ( #13630 )
2019-11-07 15:41:43 -06:00
elpa
elsd
elsdc
elsi
emacs
ember
emboss
enchant
energyplus
entrezdirect
environment-modules
environment-modules: add version 4.4.0 ( #13772 )
2019-11-18 10:53:06 -07:00
eospac
eq-r
er
erfa
ermod
erne
es-shell
esmf
essl
ethminer
ethtool
ethtool: new package at version 4.8 ( #13864 )
2019-11-23 09:17:49 +01:00
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exiv2
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
eztrace
f18
f90cache
fabtests
falcon
fann
faodel
fast-global-file-status
fasta
fastjar
fastmath
fastme
fastp
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg
fftw
fgsl
figtree
file
Added "file" package and added missing depenency to VIM ( #13705 )
2019-11-13 18:12:10 -06:00
fimpute
find-circ
find-circ: a new package. ( #13767 )
2019-11-20 16:02:34 -07:00
findutils
fio
fish
fixesproto
fl
flac
flang
flann
flash
flatbuffers
flatcc
flecsale
flecsi
add more legion version and expose more flecsi options ( #13741 )
2019-11-18 23:51:41 -07:00
flecsph
flex
Add missing dependencies to flex. ( #13692 )
2019-11-12 12:01:15 -06:00
flibcpp
flint
flit
fltk
flux-core
flux-sched
fluxbox
fluxbox: fix the comparison method with zero. ( #13642 )
2019-11-08 10:45:36 -06:00
fmt
foam-extend
folly
font-util
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fpocket
fqtrim
fr-hit
freebayes
freeglut
freeimage
freetype
freexl
fribidi
fseq
fsl
fslsfonts
fstobdf
fstrack
ftgl
fujitsu-mpi
funhpc
fyba
fzf
g4abla
g4emlow
g4ensdfstate
g4ndl
g4neutronxs
g4photonevaporation
g4pii
g4radioactivedecay
g4realsurface
g4saiddata
g4tendl
gams
gapbs
gapcloser
gapfiller
gasnet
gatk
gaudi
gaussian
gawk
gblocks
gcc
gccmakedep
gccxml
gconf
gcta
gdal
gdb
gdbm
gdk-pixbuf
gdl
geant4
geant4-data
gearshifft
gemmlowp
genemark-et
genomefinisher
genometools
genrich
genrich: new package at 0.6 ( #13791 )
2019-11-20 15:47:36 -07:00
geopm
package/geopm: Added versions 1.0.0 and 1.1.0 ( #13721 )
2019-11-14 12:01:03 -06:00
geos
gettext
gflags
ghost
ghostscript
ghostscript-fonts
giflib
ginkgo
Balay/ginkgo 1.1.0 ( #13632 )
2019-11-07 18:51:20 -06:00
git
git-fat-git
git-imerge
git-lfs
gl2ps
glew
glfmultiples
glib
glibmm
glimmer
glm
global
globalarrays
glog
gloo
glpk
glproto
glvis
gmake
Added "file" package and added missing depenency to VIM ( #13705 )
2019-11-13 18:12:10 -06:00
gmap-gsnap
gmime
gmodel
gmp
gmsh
gmt
gmtsar
gnat
gnome-common
gnupg
gnuplot
gnutls
go
go-bootstrap
go-md2man
gobject-introspection
googletest
gotcha
gource
gperf
gperftools
gpgme
gplates
gprolog
gpu-burn
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
graphviz: Fix patch URL ( #13654 )
2019-11-09 12:46:29 -06:00
grass
Add grass 7.8.1 ( #13664 )
2019-11-09 19:41:29 -06:00
grep
Added "file" package and added missing depenency to VIM ( #13705 )
2019-11-13 18:12:10 -06:00
grib-api
grnboost
groff
gromacs
Adding final bug-releases for the gromacs-2016 and -2018 and Plumed ( #13715 )
2019-11-14 12:00:36 -06:00
grpc
grpc: update to 1.24.3 ( #13658 )
2019-11-09 12:42:34 -06:00
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gtksourceview
gts
guidance
guile
guile package: Handling the threads option. ( #13730 )
2019-11-16 14:34:38 -07:00
gurobi
gzip
Added "file" package and added missing depenency to VIM ( #13705 )
2019-11-13 18:12:10 -06:00
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz
harminv
hc
hdf
hdf5
hdf5-blosc
heaptrack
help2man
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea
hmmer
added hmmer v 3.3 ( #13793 )
2019-11-20 19:04:27 -07:00
homer
hoomd-blue
hotspot
hpccg
hpctoolkit
hpcviewer
hpgmg
hpl
hpx
add MAX_CPU_COUNT variant to HPX package ( #13769 )
2019-11-19 12:49:32 -07:00
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hugo
hunspell
hwloc
hwloc: added 'master' version pointing at the HEAD of the master branch ( #13731 )
2019-11-14 12:06:07 -06:00
hybpiper
hydra
hydrogen
Updated versions numbers for Aluminum and Hydrogen. ( #13814 )
2019-11-20 19:04:01 -07:00
hyphy
hypre
i3
ibm-java
ibmisc
iceauth
icedtea
icet
ico
icu4c
Mark conflicts between newer packages and Intel 14 compilers ( #13729 )
2019-11-14 16:27:36 -06:00
id3lib
idba
iegenlib
igraph
igvtools
ilmbase
imagemagick
imake
imp
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
Add new version of Intel MKL-DNN ( #13669 )
2019-11-11 12:52:53 -06:00
intel-mpi
intel-parallel-studio
intel-pin
intel-tbb
intel-xed
interproscan
intltool
ioapi
ior
iozone
iperf2
iperf3
ipopt
isaac
isaac-server
isl
iso-codes
itstool
itsx
jackcess
jags
jansson
jasper
jbigkit
jchronoss
jdk
Add latest version of bazel ( #13813 )
2019-11-25 11:59:12 -06:00
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-fortran
json-glib
jsoncpp
jube
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kdiff3
kealib
kentutils
kibana
kim-api
kitty
kmergenie
kokkos
kokkos-kernels
kraken
krb5
krims
kripke
kvasir-mpl
kvtree
ladot
laghos
lame
lammps
Updated LAMMPS package to use gpu and kokkos options. ( #13886 )
2019-11-25 13:22:31 -06:00
last
lastz
laszip
latte
launchmon
lazyten
lbann
lbxproxy
lbzip2
lcals
lcms
lcov
added lcov package ( #13687 )
2019-11-11 15:13:48 -06:00
ldc
ldc-bootstrap
legion
add more legion version and expose more flecsi options ( #13741 )
2019-11-18 23:51:41 -07:00
lemon
leveldb
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbeato
libbsd
Fix libbsd on Intel compilers ( #13720 )
2019-11-14 11:59:46 -06:00
libbson
libcanberra
libcap
libceed
libcerf
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libeatmydata
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric
libffi
Fixed url. url=" https://sourceware.org/pub/libffi/libffi-3.2.1.tar.gz ") ( #13693 )
2019-11-12 11:58:49 -06:00
libffs
libfive
libflame
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libglvnd
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libiberty
libibumad
libice
libiconv
libidn2
libint
libjpeg
libjpeg-turbo
libkml
libksba
liblas
liblbxutil
liblockfile
libmad
libmatheval
libmaxminddb
libmesh
libmng
libmo-unpack
libmonitor
libnbc
libnl
libnova
libnrm
libnsl
libogg
liboldx
libpcap
libpciaccess
libpeas
libpfm4
libpipeline
libplist
libpmemobj-cpp
libpng
libpsl
libpthread-stubs
libquo
librom
librsvg
libseccomp
libsecret
libsharp
libshm
libsigcpp
libsigsegv
libsm
libsodium
libspatialindex
libspatialite
libsplash
libssh
libssh2
libsvm
libszip
libtasn1
libtermkey
libtiff
libtirpc
libtomlc99
libtool
libunistring
libunwind
libusb
libusbmuxd
libuuid
libuv
libvdwxc
libvorbis
libvterm
libwebp
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
fix libxml2 url ( #13770 )
2019-11-18 10:58:16 -07:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml
libyogrt
libzip
libzmq
liggghts
lighttpd
likwid
likwid: added version 5.0.0 ( #13858 )
2019-11-23 09:21:59 +01:00
linkphase3
linux-headers
listres
lizard
llvm
llvm: fix PythonString::GetString for >=python-3.7 ( #13631 )
2019-11-07 19:05:16 -06:00
llvm-openmp
llvm-openmp-ompt
lm-sensors
Improved library access for lm-sensors and implemented use in papi. ( #13885 )
2019-11-25 15:42:14 -06:00
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsf
lsof
ltp
ltp: added new package ( #13878 )
2019-11-25 14:38:25 +01:00
ltrace
lua
lua-bitlib
lua-lpeg
lua-luafilesystem
lua-luajit
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lvm2
lwgrp
lwm2
lz4
lzma
lzo
m4
m4: fixed macOS version identification on patch ( #13623 )
2019-11-07 09:43:59 -06:00
macsio
mad-numdiff
mafft
magics
magma
makedepend
maker
mallocmc
man-db
manta
mapnik
Mapnik: fix runtime error involving py-pycairo and PDF ( #13865 )
2019-11-25 13:01:14 -06:00
mapserver
maq
margo
mariadb
mariadb-c-client
masa
masurca
mathematica
matio
matlab
maven
maverick
mawk
mbedtls
mc
mcl
mdtest
med
meep
mefit
megadock
megahit
memaxes
meme
memkind
memsurfer
meraculous
mercurial
mercury
mesa
mesa-glu
meshkit
meson
mesquite
metabat
metaphysicl
metis
update to add ascent 0.5.0 release ( #13709 )
2019-11-17 12:36:14 -07:00
mfem
update to add ascent 0.5.0 release ( #13709 )
2019-11-17 12:36:14 -07:00
mg
Add mg, a gnu-emacs like fork of microemacs ( #13812 )
2019-11-21 11:40:13 -07:00
mgis
Fix mgis package dependency on boost/numpy ( #13717 )
2019-11-13 15:35:09 -06:00
microbiomeutil
migrate
mii
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minivite
minixyce
minizip
minuit
mira
miranda
miranda: a new package. ( #13768 )
2019-11-20 16:01:41 -07:00
mirdeep2
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
mmg
moab
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-c-driver
mongo-cxx-driver
mono
montage
mosh
mothur
motif
motioncor2
mount-point-attributes
mozjs
mpark-variant
mpc
mpdecimal
mpe2
mpest
mpfr
mpi-bash
mpich
mpich: Add 3.3.2 ( #13790 )
2019-11-20 15:48:11 -07:00
mpifileutils
mpilander
mpileaks
mpip
mpir
mpix-launch-swift
mpt
Fixing Fortran MPI compiler reference in mpt package ( #13699 )
2019-11-12 11:57:07 -06:00
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
msmc
mstk
multitail
multitime
multiverso
mummer
mumps
munge
muparser
muscle
muse
musl
muster
mutationpp
mvapich2
Update MVAPICH2 package for 2.3.2 release ( #13236 )
2019-11-13 15:18:35 -06:00
mxml
mxnet
mysql
nag
nalu
nalu-wind
namd
nano
nanoflann
nanopb
nasm
Mark conflicts between newer packages and Intel 14 compilers ( #13729 )
2019-11-14 16:27:36 -06:00
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses
ncurses: don't run strip internally ( #13843 )
2019-11-23 20:47:59 -07:00
ncview
ncview: Fix dependency check ( #13615 )
2019-11-06 13:24:33 -06:00
ndiff
nek5000
nekbone
nekcem
nektar
nektools
neovim
nest
netcdf-c
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
netlib-lapack
netlib-scalapack
netlib-xblas
netperf
netperf: added new package ( #13876 )
2019-11-25 15:12:32 +01:00
nettle
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
nim
ninja
ninja-fortran
nix
nlohmann-json
nlohmann-json 3.7.2 ( #13672 )
2019-11-11 11:23:50 +01:00
nlopt
Update nlopt package to add Python bindings to PYTHONPATH ( #13688 )
2019-11-12 11:46:12 -06:00
nmap
nnvm
node-js
notmuch
npb
npm
npth
nrm
nseg
nspr
ntpoly
numactl
numdiff
nut
nvptx-tools
nwchem
nyancat
ocaml
occa
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-catalyst
of-precice
omega-h
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
opam
opari2
openbabel
openblas
opencoarrays
opencv
openexr
openfast
openfdtd
openfoam
update openfoam versions, sha256 values and download directory ( #13653 )
2019-11-08 14:46:33 -06:00
openfoam-org
openfst
opengl
openglu
openimageio
openjdk
openjpeg
openkim-models
openldap
openmc
openmpi
openmx
opennurbs
openpa
openpmd-api
openPMD-api: 0.10.0 ( #13750 )
2019-11-17 12:35:40 -07:00
openscenegraph
openslide
openspeedshop
openspeedshop-utils
openssh
openssl
openstf
opium
optional-lite
optipng
opus
orca
orfm
orthofiller
orthofinder
orthomcl
osmctools
osqp
osu-micro-benchmarks
otf
otf2
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal
paml
panda
pandaseq
pandoc
pango
pangomm
papi
Improved library access for lm-sensors and implemented use in papi. ( #13885 )
2019-11-25 15:42:14 -06:00
papyrus
paradiseo
parallel
parallel-netcdf
paraver
paraview
parmetis
parmgridgen
parquet-cpp
parsimonator
parsplice
partitionfinder
pasta
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
perl
binary distribution: relocate text files properly in relative binaries ( #13578 )
2019-11-18 14:13:42 -07:00
perl-acme-damn
perl-algorithm-diff
perl-alien-build
perl-alien-libxml2
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bioperl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-db-file
perl-dbd-mysql
perl-dbd-pg
perl-dbd-sqlite
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-devel-symdump
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-error
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-ffi-checklib
perl-file-chdir
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-forks
perl-gd
perl-gdgraph
perl-gdgraph-histogram
perl-gdtextutil
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-io-all
perl-io-compress
perl-io-html
perl-io-prompt
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-io-stringy
perl-io-tty
perl-ipc-run
perl-json
perl-libwww-perl
perl-libxml-perl
perl-list-moreutils
perl-list-moreutils-xs
perl-log-log4perl
perl-logger-simple
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-mailtools
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-path-tiny
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perl-unsafe-signals
perl-perl-version
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intervaltree
perl-set-intspan
perl-set-scalar
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-sys-sigaction
perl-task-weaken
perl-term-readline-gnu
perl-termreadkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-timedate
perl-try-tiny
perl-uri
perl-want
perl-www-robotrules
perl-xml-dom
perl-xml-dom-xpath
perl-xml-filter-buffertext
perl-xml-libxml
perl-xml-libxslt
perl-xml-namespacesupport
perl-xml-parser
perl-xml-parser-lite
perl-xml-quote
perl-xml-regexp
perl-xml-sax
perl-xml-sax-base
perl-xml-sax-writer
perl-xml-simple
perl-xml-twig
perl-xml-writer
perl-xml-xpathengine
perl-yaml
perl-yaml-libyaml
petsc
petsc: add version 3.12.2 ( #13859 )
2019-11-22 20:35:16 -06:00
pexsi
pfft
pflotran
xsdk@0.5.0 ( #13682 )
2019-11-14 16:36:51 -06:00
pfunit
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist
phrap-crossmatch-swat
phred
phylip
phyluce
picard
picsar
picsarlite
pidx
pigz
pilon
pindel
piranha
pism
pixman
pixz
pkg-config
pkgconf
pktools
planck-likelihood
plasma
platypus
plink
plplot
plumed
Adding final bug-releases for the gromacs-2016 and -2018 and Plumed ( #13715 )
2019-11-14 12:00:36 -06:00
pmdk
pmdk: fix x86_64 arch check ( #13676 )
2019-11-11 15:46:44 +01:00
pmgr-collective
pmix
pmlib
pnfft
pngquant
pngwriter
pnmpi
poamsa
pocl
polymake
poppler
poppler-data
popt
porta
portage
portcullis
postgresql
powerapi
ppl
pplacer
prank
prank: use Spack compilers and remove x86_64 opts from Makefile ( #13877 )
2019-11-25 15:14:18 +01:00
precice
precice: enable petsc by default ( #13696 )
2019-11-12 11:40:37 -06:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
procps
prodigal
proj
protobuf
protobuf-c
proxymngr
prrte
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py
py-adios
py-advancedhtmlparser
py-aenum
py-affine
py-alabaster
py-alembic
py-altgraph
py-amqp
py-amqp: added new package ( #13848 )
2019-11-25 16:26:59 +01:00
py-antlr4-python3-runtime
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-asdf
py-ase
py-asn1crypto
py-aspy-yaml
py-astor
py-astroid
py-astropy
py-astunparse
py-async-generator
py-atomicwrites
py-atropos
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-backports-tempfile
py-backports-weakref
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-billiard
Add the py-billiard package ( #13849 )
2019-11-23 14:14:28 +01:00
py-bintrees
py-binwalk
py-biom-format
py-biomine
py-biopython
py-bitarray
py-bitstring
py-black
py-bleach
py-blessed
py-blessings
py-blinker
py-bokeh
py-boltons
py-boto3
py-botocore
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-brotlipy
py-bsddb3
py-bx-python
py-bz2file
py-cached-property
py-cached-property: added new package at v 1.5.1 ( #13850 )
2019-11-23 09:20:24 +01:00
py-cachetools
py-cairocffi
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-cdsapi
py-celery
py-celery: added new package ( #13851 )
2019-11-25 16:28:06 +01:00
py-certifi
py-certipy
py-cf-units
py-cffi
py-cfgv
py-cftime
py-chai
py-chardet
py-checkm-genome
py-cheetah
py-cherrypy
New Package: py-cherrypy ( #13587 )
2019-11-08 14:41:59 -06:00
py-click
py-click-plugins
py-cligj
py-clipboard
py-cloudpickle
py-codecov
py-cogent
py-colorama
py-colorlog
py-colormath
py-colorpy
py-configobj
py-configparser
py-contextlib2
py-convertdate
new package: py-convertdate ( #13573 )
2019-11-07 11:51:53 -06:00
py-counter
py-cov-core
py-coverage
py-crispresso
py-crossmap
py-cryptography
py-cssselect
add new package : py-cssselect ( #13879 )
2019-11-25 14:32:04 +01:00
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cvxpy
py-cycler
py-cython
py-dask
py-dataclasses
py-dateparser
new package: py-dateparser ( #13574 )
2019-11-06 13:18:37 -06:00
py-dbf
py-decorator
py-deeptools
py-deeptoolsintervals
py-defusedxml
py-dendropy
py-deprecation
py-descartes
py-dill
py-discover
py-dlcpar
py-dnaio
py-docopt
py-docutils
py-docutils-stubs
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-earthengine-api
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-ecdsa
py-ecos
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-empy
py-entrypoints
py-enum34
py-matplotlib only needs backports when ^python@:2 ( #13712 )
2019-11-14 16:26:44 -06:00
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-exodus-bundler
py-fallocate
py-fastaindex
py-fastcache
py-fasteners
py-faststructure
py-filelock
py-filemagic
py-fiona
py-fiscalyear
py-flake8
py-flake8-import-order
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye
py-fn-py
py-fortranformat
py-fparser
py-freezegun
py-fsspec
py-funcsigs
py-functools32
py-future
py-futures
py-fypp
py-gast
Add old version of py-gast ( #13806 )
2019-11-20 15:21:03 -07:00
py-gdbgui
py-gdc-client
py-gee-asset-manager
py-geeadd
py-geeup
py-genders
py-genshi
py-gensim
py-geoalchemy2
py-geopandas
py-gevent
py-git-review
py-gnuplot
py-goatools
py-google-api-core
py-google-api-python-client
py-google-auth
py-google-auth-httplib2
py-google-cloud-core
py-google-cloud-storage
py-google-pasta
Add py-google-pasta package ( #13807 )
2019-11-20 15:20:47 -07:00
py-google-resumable-media
py-googleapis-common-protos
py-gpaw
py-graphviz
py-greenlet
py-grequests
py-griddataformats
py-grpcio
Add new py-grpcio package ( #13808 )
2019-11-20 15:20:28 -07:00
py-guidata
py-guiqwt
py-h5glance
py-h5py
py-hdfs
py-hepdata-validator
py-hpccm
py-html2text
py-html5lib
py-htseq
py-httpbin
py-httplib2
py-humanfriendly
Add the py-humanfriendly package ( #13853 )
2019-11-23 19:12:03 +01:00
py-humanize
py-hypothesis
py-ics
py-identify
py-idna
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
py-importlib
py-importlib-metadata
py-importlib-resources
Add the py-importlib-resources package ( #13854 )
2019-11-25 13:00:45 -06:00
py-iniparse
py-invoke
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jaraco-functools
New package: py-jaraco-functools ( #13581 )
2019-11-07 18:52:32 -06:00
py-jdatetime
new package: py-jdatetime ( #13569 )
2019-11-06 13:25:01 -06:00
py-jdcal
py-jedi
py-jinja2
py-jmespath
py-joblib
py-jplephem
py-jprops
py-jpype1
py-jsonpatch
py-jsonpointer
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-core add new version and setuptools dependency ( #13424 )
2019-11-06 13:30:59 -06:00
py-jupyterhub
py-keras
py-keras-applications
py-keras-preprocessing
py-kitchen
py-kiwisolver
py-kmodes
py-kombu
py-kombu: added new package ( #13855 )
2019-11-25 16:02:03 +01:00
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble
py-ligo-segments
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lru-dict
py-lscsoft-glue
py-luigi
py-lxml
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-markdown
py-markupsafe
py-matplotlib
py-matplotlib backend dependencies needed at runtime ( #13867 )
2019-11-23 21:23:45 -06:00
py-mccabe
py-mdanalysis
py-mechanize
py-memory-profiler
py-merlin
py-metasv
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mlxtend
py-mo-pack
py-mock
py-modred
py-moltemplate
py-monotonic
py-monty
py-more-itertools
py-mpi4py
py-mpld3
py-mpmath
py-multi-key-dict
py-multiprocess
py-multiqc
py-matplotlib only needs backports when ^python@:2 ( #13712 )
2019-11-14 16:26:44 -06:00
py-munch
py-mx
py-myhdl
py-mypy
py-mypy-extensions
py-mysql-connector-python
py-mysqlclient
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-nc-time-axis
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nodeenv
new package: py-nodeenv ( #13594 )
2019-11-06 13:16:49 -06:00
py-nose
py-nose2
py-nose-cov
py-nosexcover
py-notebook
py-numba
py-numexpr
py-numexpr3
py-numexpr3: fix version ( #13781 )
2019-11-20 15:49:13 -07:00
py-numpy
py-numpy: added version 1.17.4 ( #13670 )
2019-11-11 11:26:21 +01:00
py-numpydoc
py-oauth2client
py-oauthlib
py-olefile
py-onnx
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-opppy
py-ordereddict
py-oset
py-osqp
py-overpy
py-owslib
py-packaging
py-palettable
py-pamela
py-pandas
py-pandocfilters
py-paramiko
py-parse
Add the py-parse package ( #13856 )
2019-11-23 09:36:29 +01:00
py-partd
py-path-py
py-pathlib
py-pathlib2
py-pathos
py-pathspec
py-patsy
New package: py-wub, with supporting fixes ( #13773 )
2019-11-22 20:34:43 -06:00
py-pauvre
py-pbr
py-pep8-naming
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow
py-pint
py-pip
py-pipits
py-pispino
py-pkgconfig
py-pkginfo
py-planar
py-plotly
py-pluggy
py-ply
py-pmw
py-portend
New Package py-portend ( #13584 )
2019-11-08 14:44:29 -06:00
py-poster
py-pox
py-ppft
py-pre-commit
py-prettytable
py-progress
py-progressbar2
py-projectq
py-prometheus-client
py-prompt-toolkit
py-protobuf
Add old versions and missing dependencies to py-protobuf ( #13811 )
2019-11-20 15:19:47 -07:00
py-psutil
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-py-cpuinfo
py-pyani
py-pyarrow
(py)arrow: new versions ( #13561 )
2019-11-07 11:52:29 -06:00
py-pyasn1
py-pyasn1-modules
py-pybedtools
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares
py-pycbc
py-pychecker
py-pycmd
New package: py-wub, with supporting fixes ( #13773 )
2019-11-22 20:34:43 -06:00
py-pycodestyle
py-pycparser
py-pycrypto
py-pycuda
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pydot2
py-pydotplus
py-pydv
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdal
py-pygdbmi
py-pygit2
py-pyglet
py-pygments
py-pygobject
py-pygpu
py-pygresql
py-pygtk
py-pyjwt
py-pyke
py-pykml
py-pykwalify
py-pyliblzma
py-pylint
py-pymatgen
py-pymeeus
py-pyminifier
py-pymol
py-pymongo
py-pymorph
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc
py-pyomo
py-pyopenssl
py-pypar
py-pyparsing
py-pypeflow
py-pyperclip
py-pyperf
py-pyprof2html
py-pyproj
py-pyqi
py-pyqt4
new package Qscintilla (with python bindings via py-pyqt ) ( #12793 )
2019-11-14 12:01:49 -06:00
py-pyqt5
new package Qscintilla (with python bindings via py-pyqt ) ( #12793 )
2019-11-14 12:01:49 -06:00
py-pyrad
py-pyrosar
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pyside: fix setup files to support python 3.5. ( #13613 )
2019-11-07 15:43:49 -06:00
py-pyside2
New Package: py-pyside2 ( #13647 )
2019-11-09 18:22:30 -06:00
py-pysmartdl
py-pysocks
py-pyspark
py-pysqlite
py-pytailf
py-pytest
py-pytest-cache
py-pytest-cov
py-pytest-flake8
py-pytest-forked
py-pytest-httpbin
py-pytest-isort
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-dateutil
py-python-editor
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-igraph
py-python-jenkins
py-python-ldap
py-python-levenshtein
py-python-magic
py-python-mapnik
Mapnik: fix runtime error involving py-pycairo and PDF ( #13865 )
2019-11-25 13:01:14 -06:00
py-python-meep
py-python-memcached
py-python-oauth2
py-python-socketio
py-python-utils
py-pythonqwt
py-pytools
py-pytz
py-pyudev
py-pyugrid
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-pyzmq
py-qtawesome
py-qtconsole
py-qtpy
py-qtpy: enable use with pyqt5, pyside and pyside2 ( #13837 )
2019-11-25 16:14:57 +01:00
py-quantities
py-quast
py-queryablelist
py-radical-utils
py-ranger-fm
add new version for py-ranger-fm (formerly py-ranger) ( #13681 )
2019-11-12 12:05:18 -06:00
py-rasterio
py-ratelim
py-raven
py-readme-renderer
py-redis
py-regex
py-reportlab
py-repoze-lru
py-requests
py-requests-futures
py-requests-oauthlib
py-requests-toolbelt
py-restview
py-retrying
py-rnacocktail
py-rnacocktail: a new package. ( #13761 )
2019-11-18 14:09:39 -07:00
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-ruamel-yaml
py-s3transfer
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn
py-scikit-learn: update OpenMP flag ( #13683 )
2019-11-11 12:52:30 -06:00
py-scikit-optimize
py-scipy
Add py-scipy 1.3.3 ( #13866 )
2019-11-23 16:50:02 -06:00
py-scoop
py-scp
py-scs
py-seaborn
py-selenium
py-semantic-version
py-semver
py-send2trash
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sgp4
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-simplekml
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-smart-open
py-sncosmo
py-snowballstemmer
Fix setuptools dependency in py-snowballstemmer ( #13844 )
2019-11-23 15:25:24 +01:00
py-snuggs
py-sortedcontainers
py-soupsieve
py-spatialist
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxautomodapi
py-sphinxcontrib-applehelp
py-sphinxcontrib-bibtex
py-sphinxcontrib-devhelp
py-sphinxcontrib-htmlhelp
py-sphinxcontrib-jsmath
py-sphinxcontrib-programoutput
py-sphinxcontrib-qthelp
py-sphinxcontrib-serializinghtml
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
New package: py-wub, with supporting fixes ( #13773 )
2019-11-22 20:34:43 -06:00
py-stevedore
py-storm
py-stratify
py-subprocess32
py-symengine
py-symfit
py-sympy
py-systemd-python
py-tables
py-tabulate
py-tap-py
py-tatsu
py-tblib
py-tempora
new package: py-tempora ( #13582 )
2019-11-07 18:59:38 -06:00
py-termcolor
py-terminado
py-testinfra
py-testpath
py-tetoolkit
py-texttable
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-torch
Add new version of Intel MKL-DNN ( #13669 )
2019-11-11 12:52:53 -06:00
py-torchvision
py-torchvision: add 0.4.2 ( #13651 )
2019-11-08 14:33:46 -06:00
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-treehash
py-tuiview
py-twine
py-twisted
py-typed-ast
py-typesentry
py-typing
py-typing-extensions
py-tzlocal
py-umalqurra
py-umi-tools
py-unicycler
py-unittest2
py-unittest2py3k
py-uritemplate
py-urllib3
py-urwid
py-usgs
py-uwsgi
New package: py-uwsgi ( #13619 )
2019-11-07 18:58:47 -06:00
py-vcversioner
py-vine
Add the py-vine package ( #13857 )
2019-11-23 09:35:07 +01:00
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-voluptuous
py-vsc-base
py-vsc-install
py-wand
py-warlock
py-wcsaxes
py-wcwidth
py-weave
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel
py-widgetsnbextension
py-wradlib
py-wrapt
py-wub
New package: py-wub, with supporting fixes ( #13773 )
2019-11-22 20:34:43 -06:00
py-wxpython
py-xarray
py-xattr
py-xattr: fix a package that was pointing to a fork ( #13685 )
2019-11-18 12:09:47 +01:00
py-xdot
py-xenv
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xmltodict
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt
py-zc-buildout
new package: py-zc-buildout ( #13585 )
2019-11-08 14:43:49 -06:00
py-zipp
py-zope-event
py-zope-interface
pythia6
python
qbank
qbox
qca
qhull
qjson
qmcpack
qmd-progress
qnnpack
qorts
qrupdate
qscintilla
new package Qscintilla (with python bindings via py-pyqt ) ( #12793 )
2019-11-14 12:01:49 -06:00
qt
qt-creator
qtgraph
qthreads
qtkeychain
quantum-espresso
quinoa
qwt
qwtpolar
r
r3d
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-askpass
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm
r-bbmisc
r-beanplot
r-bfast
r-bfastspatial
r-bglr
r-bh
r-biasedurn
r-bibtex
r-bindr
r-bindrcpp
r-bio3d
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-cairo
r-callr
r-car
r-cardata
r-caret
r-caroline
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-clisymbols
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-combinat
r-commonmark
r-complexheatmap
r-compositions
r-construct
r-convevol
r-corhmm
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-crul
r-ctc
r-cubature
r-cubist
r-curl
r-dada2
r-data-table
r-dbi
r-dbplyr
r-debugme
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-desc
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-dosnow
r-dotcall64
r-downloader
r-dplyr
r-dqrng
r-dt
r-dtw
r-dygraphs
r-dynamictreecut
r-e1071
r-edger
r-ellipse
r-ellipsis
r-emmli
r-energy
r-ensembldb
r-ergm
r-evaluate
r-expint
r-expm
r-factoextra
r-factominer
r-fansi
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-fields
r-filehash
r-findpython
r-fit-models
r-fitdistrplus
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-fs
r-futile-logger
r-futile-options
r-future
r-future-apply
r-gamlss
r-gamlss-data
r-gamlss-dist
r-gbm
r-gbrd
r-gcrma
r-gdalutils
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-geneplotter
r-generics
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa
r-geomorph
r-geonames
r-geoquery
r-geor
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggsignif
r-ggvis
r-gh
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-globals
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gower
r-gplots
r-graph
r-grbase
r-gridbase
r-gridextra
r-gsa
r-gseabase
r-gss
r-gstat
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-gwmodel
r-haven
r-hdf5r
r-hexbin
r-highr
r-hmisc
r-hms
r-hoardr
r-htmltable
r-htmltools
r-htmlwidgets
r-httpcode
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-ini
r-inline
r-interactivedisplaybase
r-intervals
r-inum
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-isdparser
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-later
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-leiden
r-lhs
r-libcoin
r-limma
r-listenv
r-lme4
r-lmtest
r-locfit
r-log4r
r-loo
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magick
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-metap
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mitools
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nleqslv
r-nlme
r-nloptr
r-nmf
r-nmof
r-nnet
r-nnls
r-nor1mix
r-nortest
r-np
r-npsurv
r-numderiv
r-oligoclasses
r-openssl
r-openxlsx
r-optparse
r-ordinal
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-phylostratr
r-phytools
r-picante
r-pillar
r-pkgbuild
r-pkgconfig
r-pkgload
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-polynom
r-popgenome
r-popvar
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-promises
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-psych
r-ptw
r-purrr
r-qtl
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-r-methodss3
r-r-oo
r-r-utils
r-randomfields
r-randomfieldsutils
r-randomforest
r-randomglm
r-ranger
r-rann
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcmdcheck
r-rcolorbrewer
r-rcpp
r-rcppannoy
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppparallel
r-rcppprogress
r-rcurl
r-rda
r-rdpack
r-readr
r-readxl
r-recipes
r-registry
r-rematch
r-remotes
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-reticulate
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgexf
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhmmer
r-rhtslib
r-rinside
r-rio
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmutil
r-rmysql
r-rngtools
r-rnoaa
r-robust
r-robustbase
r-rocr
r-rodbc
r-rook
r-rots
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrblup
r-rrcov
r-rrpp
r-rsamtools
r-rsnns
r-rsolnp
r-rspectra
r-rsqlite
r-rstan
r-rstantools
r-rstudioapi
r-rsvd
r-rtracklayer
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sctransform
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-sessioninfo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shinyfiles
r-shortread
r-siggenes
r-simpleaffy
r-sitmo
r-sm
r-smoof
r-sn
r-snakecase
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-spacetime
r-spam
r-sparsem
r-spatial
r-spatialreg
r-spdata
r-spdep
r-speedglm
r-spem
r-splancs
r-splitstackshape
r-sqldf
r-squarem
r-squash
r-sseq
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-sys
r-tarifx
r-taxizedb
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tinytex
r-tmixclust
r-topgo
r-triebeard
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-ucminf
r-udunits2
r-units
r-urca
r-urltools
r-usethis
r-utf8
r-uuid
r-uwot
r-variantannotation
r-varselrf
r-vcd
r-vctrs
r-vegan
r-vfs
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-webshot
r-wgcna
r-whisker
r-withr
r-xde
r-xfun
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial
r-xopen
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zeallot
r-zip
r-zlibbioc
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
range-v3
rankstr
rapidjson
ravel
raxml
ray
rclone
rdma-core
rdp-classifier
rdptools
re2c
readfq
readline
recon
recordproto
redis
redset
redundans
regcm
relax
relion
rempi
rename
rendercheck
renderproto
repeatmasker
repeatmodeler
repeatscout
resourceproto
revbayes
revbayes: add new versions ( #13760 )
2019-11-16 00:12:38 -07:00
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rnaz
rnaz: new package at 2.1 ( #13707 )
2019-11-13 15:48:06 -06:00
rngstreams
rocksdb
rockstar
rodinia
root
Fix ROOT dependencies (for +r variant) ( #13839 )
2019-11-25 13:02:03 -06:00
rose
ross
routino
rpcsvc-proto
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
saga-gis
sailfish
salmon
sambamba
samblaster
samrai
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scallop
scalpel
Update scalpel package.py ( #13746 )
2019-11-17 12:45:16 -07:00
scan-for-matches
scons
scorec-core
scorep
scotch
scr
screen
scripts
scrnsaverproto
scs
sctk
sdl2
sdl2-image
sdsl-lite
seacas
sed
sentieon-genomics
sentieon-genomics: add 201808.07 ( #13794 )
2019-11-20 15:46:22 -07:00
seqan
seqkit
seqprep
seqtk
serf
sessreg
setxkbmap
sfcgal
new package: sfcgal ( #12624 )
2019-11-13 15:19:43 -06:00
sga
shadow
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simgrid
simplemoc
simul
simulationio
singularity
singularity-legacy
sirius
SIRIUS: add new version, add magma support ( #13680 )
2019-11-11 16:19:40 -06:00
skilion-onedrive
skopeo
sl
slate
sleef
slepc
slurm
smalt
smof
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soapdenovo2
soapdenovo-trans
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
span-lite
spark
sparsehash
sparta
spdlog
spectrum-mpi
athena, mvapich2, spectrum-mpi: use new API to setup environment ( #13677 )
2019-11-12 11:44:12 -06:00
speex
spfft
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite
sqlitebrowser
squashfs
squid
sratoolkit
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
add boost dependency to stat package ( #13735 )
2019-11-14 16:26:24 -06:00
stata
stc
steps
stow
strace
stream
strelka
stress
string-view-lite
stringtie
structure
strumpack
strumpack: revert default to ~shared [i.e behavior before this variant was added] as +shared fails on multiple builds ( #13703 )
2019-11-12 20:22:34 -06:00
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials
sundial: add patch for build failure on cori/theta ( #13665 )
2019-11-12 07:52:05 -06:00
superlu
superlu-dist
superlu_dist: fix build with xl compilers ( #13702 )
2019-11-13 15:03:24 -06:00
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swftools
swiftsim
swig
symengine
sympol
sz
tabix
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian
tassel
tau
tcl
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
tecplot
templight
templight-tools
tensorflow-serving-client
tensorflow-serving-client: add new package ( #13771 )
2019-11-20 16:01:04 -07:00
tetgen
tethex
texinfo
texinfo: fix unescaped braces, and update locale handling ( #13815 )
2019-11-20 20:54:55 -07:00
texlive
texstudio
textparser
tfel
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
tig
time
timemory
Timemory ( #13503 )
2019-11-08 10:35:14 -06:00
tinker
tinker: initial commit ( #13869 )
2019-11-24 10:31:15 -07:00
tinyxml
tinyxml2
tioga
tippecanoe
tix
tk
tldd
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos
trilinos: add version 12.18.1 with dtk-3.1 ( #13690 )
2019-11-12 07:52:24 -06:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore
update to v0.6.4 ( #13737 )
2019-11-14 16:26:08 -06:00
trimmomatic
trinity
trinotate
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon
typhonio
ucx
udunits
ufo-core
ufo-filters
umap
umoci
umpire
unblur
uncrustify
unibilium
unifyfs
unison
units
unittest-cpp
unixodbc
unrar
unuran
unzip
upcxx
uriparser
usearch
utf8proc
util-linux
util-macros
uuid
uvw
valgrind
Fix for overlong shebang in valgrind ( #13779 )
2019-11-20 15:50:14 -07:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
veloc
velvet
verilator
verrou
vesta
videoproto
viennarna
viewres
vigra
vim
Added "file" package and added missing depenency to VIM ( #13705 )
2019-11-13 18:12:10 -06:00
virtualgl
visit
Fix visit+ ( #13652 )
2019-11-09 12:47:04 -06:00
vizglow
vmatch
voropp
votca-csg
votca-*: add v1.5.1 ( #13822 )
2019-11-21 16:09:03 -07:00
votca-ctp
votca-*: add v1.5.1 ( #13822 )
2019-11-21 16:09:03 -07:00
votca-tools
votca-*: add v1.5.1 ( #13822 )
2019-11-21 16:09:03 -07:00
votca-xtp
votca-*: add v1.5.1 ( #13822 )
2019-11-21 16:09:03 -07:00
vpfft
vpic
vsearch
update vsearch ( #13736 )
2019-11-14 16:17:02 -06:00
vt
vtk
Fix visit+ ( #13652 )
2019-11-09 12:47:04 -06:00
vtk-h
update to add ascent 0.5.0 release ( #13709 )
2019-11-17 12:36:14 -07:00
vtk-m
update to add ascent 0.5.0 release ( #13709 )
2019-11-17 12:36:14 -07:00
wannier90
warpx
watch
wcslib
wget
wgsim
which
Added "file" package and added missing depenency to VIM ( #13705 )
2019-11-13 18:12:10 -06:00
windowswmproto
wireshark
wordnet
workrave
wt
wtdbg2
wxpropgrid
wxwidgets
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdmf3
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsd
xsdk
xsdk@0.5.0 ( #13682 )
2019-11-14 16:36:51 -06:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xssp
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp
yara
yasm
yorick
z3
z3: bugfix about python dependency and fallthrough annotation. ( #13713 )
2019-11-14 16:28:05 -06:00
zfp
zip
zlib
zlib: use setup_build_environment for build env ( #13786 )
2019-11-19 12:29:35 -07:00
zoltan
zsh
zstd
