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0b2a4aea6d
spack/var/spack/repos/builtin/packages
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Michael Kuhn 0b2a4aea6d leveldb: Fix header installation (#9069) 
leveldb headers are typically included via <leveldb/c.h>. The migration
to install_tree in 73c978ddd9 caused the
headers to end up in prefix.include, which breaks existing applications.
2018-08-22 09:46:11 -05:00
..
abinit abinit: added version 8.8.2 (#8294) 2018-05-28 08:11:43 -05:00
abyss Fix digest for abyss@1.5.2 (#8341) 2018-06-01 15:06:45 -05:00
accfft Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ack
activeharmony
adept-utils
adios Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
adios2 adios2: add 2.2.0 (#8871) 2018-08-02 11:16:17 -05:00
adlbx
adol-c Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
aegean Aegean: new package (#8113) 2018-05-14 11:10:19 -05:00
albany Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
albert
alglib install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
allinea-forge
allinea-reports
allpaths-lg
alquimia Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
alsa-lib
amg Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
amg2013 Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
amp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ampliconnoise
amrex xsdk: add slepc and amrex [and handle clang conflict wrt amrex] (#8932) 2018-08-13 22:17:17 -07:00
amrvis Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
andi
angsd
ant
antlr antlr: Turn off CSharp (#8157) 2018-05-18 10:39:30 -07:00
ants Add ANTs package (#7717) 2018-04-11 14:22:23 -05:00
ape
apex
apple-libunwind apple-libunwind: new package, provides unwind 2018-08-06 22:01:50 -07:00
applewmproto
appres
apr
apr-util
aragorn ARAGORN: Create new package (#7875) 2018-04-23 16:51:42 -05:00
archer
argp-standalone
argtable
arlecore install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
armadillo
arpack-ng arpack: add version 3.6.2 (#8881) 2018-08-03 09:53:44 -05:00
arrow Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
ascent Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
asciidoc
aspa Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
aspcud
aspect Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
aspell views: packages can customize how they're added to views (#7152) 2018-06-26 16:14:05 -07:00
aspell6-de Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspell6-en Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspell6-es Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspera-cli aspera-cli: a new package. (#8715) 2018-07-16 13:53:23 -05:00
assimp Further improvements to version parsing 2018-07-25 23:10:10 -07:00
astra
astral
astyle astyle: add 3.1 (#8137) 2018-05-15 09:43:27 -05:00
at-spi2-atk Packages/atk (#9002) 2018-08-16 18:11:52 -05:00
at-spi2-core Packages/atk (#9002) 2018-08-16 18:11:52 -05:00
atk Packages/atk (#9002) 2018-08-16 18:11:52 -05:00
atlas
atom-dft install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
atompaw
atop
augustus Augustus updated to version 3.3.1 (#8588) 2018-07-22 17:11:37 -05:00
autoconf Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
autodock-vina install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
autogen Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
automaded
automake Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
axel A new package: axel. (#8434) 2018-06-10 15:16:16 -05:00
axl ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
bamtools
bamutil
barrnap
bash Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
bash-completion Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
bats
bazel Add latest versions of bazel (#8250) 2018-05-23 07:27:45 -05:00
bbcp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
bbmap
bc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
bcftools Bump samtools, hstlib and bcftools to version 1.8. (#8020) 2018-05-04 16:27:54 -05:00
bcl2fastq2 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
bdftopcf
bdw-gc
bear
beast1 beast1: add libbeagle support (#8525) 2018-07-22 17:17:03 -05:00
beast2
bedops Add info for bedops@v2.4.35 (#8310) 2018-05-29 14:46:42 -05:00
bedtools2
beforelight
benchmark Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils binutils@2.31.1: new version (#9007) 2018-08-16 18:10:08 -05:00
bioawk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
biopieces install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
bismark bismark: Create new package (#7795) 2018-04-17 14:45:10 -05:00
bison Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
bitmap
blasr blasr: new package (#8367) 2018-07-07 10:05:57 -05:00
blasr-libcpp blasr-libcpp: new package (#8366) 2018-06-13 08:55:31 -05:00
blast-plus
blat
blaze
blis Add blis package (#8925) 2018-08-16 11:26:43 -05:00
bliss
blitz
bmake Add bmake 20180512 (#8221) 2018-05-21 15:58:11 -05:00
bml Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
bohrium Update bohrium version (#9020) 2018-08-18 09:22:16 -05:00
bookleaf-cpp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
boost boost: add 1.68.0 (#8931) 2018-08-09 17:08:20 -05:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib Correcting position independent code setting for boxlib and amrex. (#8537) 2018-06-21 16:37:10 -05:00
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson All git URLs end in .git 2018-07-25 23:10:10 -07:00
breakdancer Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
breseq
brigand Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
bsseeker2
bucky
bumpversion Add package for "bumpversion" (#8078) 2018-05-12 18:37:10 -05:00
busco Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
butter
bwa Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
bwtool New packages: libbeato bwtool. (#8681) 2018-07-11 10:33:44 -05:00
byobu byobu: update package (#8628) 2018-07-02 15:17:39 -05:00
bzip2 Change bzip2 download URL (#8976) 2018-08-14 10:46:15 -06:00
c-blosc
c-lime Added C-Lime Package (#7707) 2018-04-10 12:05:05 -05:00
caffe
cairo
cairomm new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
caliper caliper: update to use unwind virtual package 2018-08-06 22:01:50 -07:00
callpath
camellia Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
candle-benchmarks
cantera
canu
cap3
cares Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cask
casper install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
catalyst
catch
cbench
cblas CBLAS: Don't hardcode BLAS library name (#9017) 2018-08-18 11:19:24 -05:00
cbtf Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cbtf-argonavis libmonitor: update version and add variant to configure (#8834) 2018-08-03 14:00:12 -04:00
cbtf-argonavis-gui qtgraph and cbtf-argonavis create proper library paths in modules (#8797) 2018-08-17 15:58:08 -07:00
cbtf-krell libmonitor: update version and add variant to configure (#8834) 2018-08-03 14:00:12 -04:00
cbtf-lanl Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ccache
cctools
cdbfasta Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cdd
cddlib
cdhit
cdo
ceed Balay/petsc remove boost dependency (#8508) 2018-06-24 10:52:14 -05:00
cereal
ceres-solver votca*: update dependencies (#8757) 2018-07-19 11:06:16 -05:00
cfitsio Add CFITSIO 3.450 (#8602) 2018-06-28 11:28:22 -05:00
cgal cgal: added version 4.12 (#8252) 2018-05-23 10:11:03 -05:00
cgm
cgns
charliecloud add Charliecloud 0.9.1 (#8902) 2018-08-06 17:43:00 -05:00
charm install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
chatterbug chatterbug: new spack package (#8994) 2018-08-18 16:18:50 -07:00
check
chlorop install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
chombo install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cistem
cityhash Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
clamr Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
clapack Fix missing makefile variable in clapack package (#9016) 2018-08-18 11:19:40 -05:00
cleaveland4
cleverleaf Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
clfft
clhep
clingo compiler flags: add cxx98 standard support (#7601) 2018-06-08 13:49:31 -07:00
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake Add new versions for cmake. (#8955) 2018-08-11 08:38:20 -05:00
cmocka
cmor
cnmem Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cnpy Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cntk Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cntk1bitsgd Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
codar-cheetah install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
coevp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cohmm Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
coinhsl
colm New colm, ragel packages (#7867) 2018-04-23 10:50:58 -05:00
colordiff
comd install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
compiz
compositeproto
conduit Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
constype
converge
coreutils Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
corset
cosmomc
cosp2 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cp2k install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cppad Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
cppcheck install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cpprestsdk
cppunit
cppzmq Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cpu-features Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cpuinfo Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cram
cryptopp Add cryptopp 7.0.0 (#8224) 2018-05-21 11:52:25 -05:00
cscope
csdp
ctffind
cub
cube Update scorep and friends to newest versions (#8171) 2018-05-17 19:52:01 -05:00
cubelib scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
cubew scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
cuda CUDA 9.2 (#8238) 2018-05-22 12:45:47 +02:00
cuda-memtest Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cudnn install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cufflinks
cups
curl Add cURL 7.60.0 (#8210) 2018-05-20 15:04:28 -05:00
cvs Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
czmq flux: update flux-core package and add a flux-sched package (#8818) 2018-08-02 16:20:55 -04:00
dakota
daligner
damageproto
damselfly tests: add checks and tests for consistent version() arguments 2018-07-25 23:10:10 -07:00
darshan-runtime
darshan-util
dash
datamash Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
dataspaces Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
davix Add new package: davix (#8376) 2018-06-06 18:54:07 -05:00
dbus Add version 1.12.8 to dbus (#8949) 2018-08-11 09:21:20 -05:00
dealii dealii: patch boost 1.68.0 (#9070) 2018-08-22 09:34:47 -05:00
dealii-parameter-gui Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
deconseq-standalone
dejagnu Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
delly2 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
denovogear
dia Dia needs access to gettext and pkg-config. (#8840) 2018-08-01 19:12:17 -05:00
dialign-tx
diamond DIAMOND: Add version 0.9.20 (#7847) 2018-04-21 09:57:06 -05:00
diffsplice
direnv
discovar
discovardenovo
dislin style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
dlpack Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
dmd dmd: a new package. (#8826) 2018-08-02 22:07:01 -05:00
dmlc-core Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
dmtcp Add package DMTCP (#8808) 2018-07-26 09:47:55 -05:00
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dsdp
dsrc
dtcmp
dyninst Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ea-utils
easybuild
ebms Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
eccodes
eclipse-gcj-parser new package: pdftk (#8166) 2018-06-12 11:25:20 -07:00
ecp-proxy-apps
ed Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
editres
eigen
elasticsearch Added elastic search (#8424) 2018-06-07 23:17:07 -05:00
elemental Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
elfutils elfutils: update version and add variants (#8891) 2018-08-07 14:04:05 -05:00
elk
elpa elpa: add 2018.05.001.rc1 and 2017.11.001 (#8512) 2018-06-22 07:52:40 -05:00
emacs Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
emboss Skip update check. (#8683) 2018-07-27 09:57:05 -05:00
encodings
environment-modules
eospac clean up version names (#8368) 2018-06-04 15:04:12 -05:00
er ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
es
esmf add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
essl Unit test fixes 2018-07-25 23:10:10 -07:00
ethminer
etsf-io
everytrace Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
everytrace-example Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
evieext
exabayes
examinimd Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
exampm Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
exasp2 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
exmcutils
exodusii Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
exonerate
expat libexpat: Fix for older systems, move to GitHub (#8135) 2018-05-17 20:04:57 -05:00
expect
express Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
extrae
exuberant-ctags
f90cache
fabtests fabtests: new package (#7837) 2018-04-25 10:29:29 -05:00
falcon Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
farmhash install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fast-gbs Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fast-global-file-status add fgfs variant to stat and develop version (#8919) 2018-08-09 10:56:08 -05:00
fasta Add package for fasta (#8953) 2018-08-11 11:38:31 -05:00
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fastqvalidator Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fasttree
fastx-toolkit
fenics
fermi fermi: Create new package. (#7702) 2018-04-10 08:52:21 -05:00
fermikit Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fermisciencetools install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
ferret
ffmpeg
fftw fftw: version bump (#8723) 2018-07-17 11:11:19 -05:00
fimpute
findutils Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
fio
fish
fixesproto
flac
flang Package/flang: Updated to use own version of llvm (#8766) 2018-08-03 20:35:09 -04:00
flann add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
flash
flatbuffers Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
flecsale Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
flecsi Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
flex flex: use 2.6.3. by default (#8154) 2018-05-17 13:58:29 -07:00
flint Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
flit
fltk
flux-core flux: update flux-core package and add a flux-sched package (#8818) 2018-08-02 16:20:55 -04:00
flux-sched flux: update flux-core package and add a flux-sched package (#8818) 2018-08-02 16:20:55 -04:00
fluxbox Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
fmt
foam-extend install_tree: symlink handling and add 'ignore' option (#9019) 2018-08-17 22:08:38 -04:00
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fpc
fr-hit
freebayes Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
freeglut freeglut: new package (#7820) 2018-04-18 19:49:42 -05:00
freetype freetype: adding subdir to cpath for deps (#7818) 2018-04-19 09:00:49 -05:00
fseq
fsl install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fslsfonts
fstobdf
ftgl FTGL package workarounds (#8812) 2018-07-26 15:54:46 -05:00
funhpc Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fyba Fix compilation of FYBA with GCC 6 (#8273) 2018-05-26 10:36:34 -05:00
gapbs
gapcloser
gapfiller
gasnet
gatk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gaussian install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gawk Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gblocks
gcc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gccmakedep
gccxml Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gconf
gcta
gdal Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
gdb Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gdbm Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gdk-pixbuf
gdl GDL and missing dependencies (#8283) 2018-06-08 08:35:28 -05:00
geant4
gearshifft Further improvements to version parsing 2018-07-25 23:10:10 -07:00
gemmlowp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
genemark-et
genomefinisher install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
genometools Aegean: new package (#8113) 2018-05-14 11:10:19 -05:00
geopm Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
geos Add Python/Ruby bindings to GEOS package (#8218) 2018-05-21 15:59:50 -05:00
gettext Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gflags
ghost Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ghostscript
ghostscript-fonts
giflib
git install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
git-imerge
git-lfs Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gl2ps
glew glew: adding gl dependency (#7817) 2018-04-18 17:58:45 -05:00
glfmultiples
glib glib: patch for rhel6, centos6, and sl6 (#8947) 2018-08-16 08:43:56 -07:00
glibmm new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
glimmer
glm
global
globalarrays Update GlobalArrays package to new releases (#7840) 2018-05-21 20:06:29 -05:00
globus-toolkit
glog Glog: make is a function (#8648) 2018-07-06 07:15:47 -05:00
gloo Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
glpk Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
glproto
glvis Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
gmake Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gmap-gsnap
gmime
gmp Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gmsh gmsh: add netgen and tetgen (#8060) 2018-05-11 14:22:12 +02:00
gnat
gnu-prolog
gnupg
gnuplot gnuplot: add 5.2.2 (#7831) 2018-04-21 10:24:36 -05:00
gnutls
go install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
go-bootstrap install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gobject-introspection init: factor paths out of spack/__init__.py and into spack.paths module 2018-05-17 14:10:30 -07:00
googletest googletest: add a shared variant for all supported versions (#8373) 2018-06-07 10:34:37 -05:00
gotcha Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gource
gperf Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gperftools gperftools@2.7: new version; homepage, URL, hash updates (#9010) 2018-08-16 19:38:02 -05:00
gplates gplates: new package (#8336) 2018-06-13 08:57:52 -05:00
grackle install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gradle install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
grandr
graph500
graphicsmagick GDL and missing dependencies (#8283) 2018-06-08 08:35:28 -05:00
graphlib
graphmap Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
graphviz Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
grass grass improvement: specify proj data directory (#8984) 2018-08-15 09:54:08 -05:00
grib-api
grnboost New package: GRNBoost (#8763) 2018-08-02 13:46:36 -04:00
groff Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gromacs Add version 5.1.5 for gromacs. (#8948) 2018-08-11 09:21:32 -05:00
gsl Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gslib Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gtkmm new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
gtkorvo-atl Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gtkorvo-cercs-env Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gtkorvo-dill Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gtkorvo-enet Gtkorvo updates (#8663) 2018-07-10 12:50:10 -05:00
gtkplus
gts
guidance
guile Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gurobi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
h5hut
h5part
h5utils
h5z-zfp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hacckernels Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hadoop Added the latest versions of a few packages (#7910) 2018-04-26 14:46:45 +02:00
halc halc: Create new package. (#8795) 2018-07-26 15:55:43 -05:00
hapcut2 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hapdip Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
haploview
harfbuzz
harminv
hdf
hdf5 hdf5: Fix build with %gcc@8 (#8788) 2018-07-26 15:58:00 -05:00
hdf5-blosc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
help2man Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
hepmc
heppdt
hic-pro HiC-pro depends on python+ucs4. (#8564) 2018-06-25 12:04:00 -05:00
highfive
highwayhash Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hiop Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hisat2
hisea hisea: new package (#8112) 2018-05-14 09:46:54 -05:00
hmmer hmmer: added version 3.2.1 & updated URL (#8787) 2018-07-26 10:07:55 -05:00
hoomd-blue All git URLs end in .git 2018-07-25 23:10:10 -07:00
hpccg
hpctoolkit All git URLs end in .git 2018-07-25 23:10:10 -07:00
hpctoolkit-externals All git URLs end in .git 2018-07-25 23:10:10 -07:00
hpgmg Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib Add samtools 1.9 (#8961) 2018-08-12 18:54:50 -05:00
httpie
hub Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
hunspell
hwloc hwloc: add v 2.0.1 (#7724) 2018-04-10 20:20:09 -05:00
hybpiper
hydra
hydrogen Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hypre Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
i3 Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
ibmisc
iceauth
icedtea
icet Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ico
icu4c
id3lib
idba
igraph
igv
igvtools install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
ilmbase
image-magick
imake
imp A new pacakge: IMP. (#7859) 2018-04-21 13:08:44 -05:00
impute2
infernal
inputproto
intel intel-parallel-studio: add version 2018.3 (#9047) 2018-08-22 09:36:33 -05:00
intel-daal update Intel packages (2018.u5 for TBB and 2018.u3 for the others) (#8928) 2018-08-20 07:56:53 -05:00
intel-gpu-tools
intel-ipp update Intel packages (2018.u5 for TBB and 2018.u3 for the others) (#8928) 2018-08-20 07:56:53 -05:00
intel-mkl update Intel packages (2018.u5 for TBB and 2018.u3 for the others) (#8928) 2018-08-20 07:56:53 -05:00
intel-mkl-dnn
intel-mpi update Intel packages (2018.u5 for TBB and 2018.u3 for the others) (#8928) 2018-08-20 07:56:53 -05:00
intel-parallel-studio intel-parallel-studio: add version 2018.3 (#9047) 2018-08-22 09:36:33 -05:00
intel-tbb update Intel packages (2018.u5 for TBB and 2018.u3 for the others) (#8928) 2018-08-20 07:56:53 -05:00
intel-xed All git URLs end in .git 2018-07-25 23:10:10 -07:00
intltool intltool requires patching for newer perl versions (#8061) 2018-05-08 17:53:50 -05:00
ior
iozone
iperf2 Packaged iperf2 (#8765) 2018-07-19 17:55:06 -05:00
iperf3 Packaged iperf3 (#8762) 2018-07-19 16:02:55 -05:00
ipopt
isaac Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
isaac-server Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
isl
itstool
itsx
jags
jansson
jasper Add JasPer 2.0.14 (#8207) 2018-05-26 10:37:48 -05:00
jbigkit
jchronoss
jdk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
jellyfish Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
jemalloc
jmol install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
jq
json-c gplates: new package (#8336) 2018-06-13 08:57:52 -05:00
json-cwx
json-glib
jsoncpp add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
judy
julia Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
k8
kahip Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
kaiju A new pacakge: Kaiju. (#8111) 2018-05-14 11:07:00 -05:00
kaks-calculator
kaldi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
kallisto
kbproto
kdiff3
kealib Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kentutils Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kim-api kim-api: initial commit (#8873) 2018-08-04 16:47:35 -05:00
kmergenie
kokkos Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kraken
krb5 Add package wireshark and dependencies (#8024) 2018-05-06 09:32:06 -05:00
krims Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kripke Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
kvasir-mpl Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kvtree ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
laghos Update homepage for laghos (#8864) 2018-08-02 13:03:52 -04:00
lammps All git URLs end in .git 2018-07-25 23:10:10 -07:00
last
latte Further improvements to version parsing 2018-07-25 23:10:10 -07:00
launchmon
lazyten Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
lbann Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
lbxproxy
lcals Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
lcms Add lcms 2.9 (#8219) 2018-05-21 15:59:11 -05:00
ldc Further improvements to version parsing 2018-07-25 23:10:10 -07:00
ldc-bootstrap
legion Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
leveldb leveldb: Fix header installation (#9069) 2018-08-22 09:46:11 -05:00
lftp
libaec Use GitLab's API endpoint for fetching a git snapshot. (#7881) 2018-04-26 16:40:11 -05:00
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle libbeagle: add java dependency so jni hooks get built (#8524) 2018-07-22 17:16:43 -05:00
libbeato New packages: libbeato bwtool. (#8681) 2018-07-11 10:33:44 -05:00
libbsd
libbson
libcanberra
libcap
libceed Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libcerf
libcheck
libcint libcint: New version 3.0.12 (#9003) 2018-08-16 15:59:26 -05:00
libcircle
libconfig Further improvements to version parsing 2018-07-25 23:10:10 -07:00
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf libdwarf: remove use of hide_files() 2018-08-02 19:00:52 -07:00
libedit
libelf
libemos
libepoxy
libev Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
libevent
libevpath Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libfabric Add 1.6.1 release. (#9042) 2018-08-21 14:14:17 -05:00
libffi
libffs Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libfontenc
libfs
libgcrypt
libgd
libgeotiff Add libgeotiff package (#8203) 2018-05-20 15:02:49 -05:00
libgit2
libgpg-error
libgpuarray
libgridxc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
libgtextutils
libharu Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libhio added line 43 (#8369) 2018-06-04 15:04:45 -05:00
libiberty Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libice
libiconv Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libint
libjpeg Update the hash of libjpeg v9c. (#8230) 2018-05-21 15:53:55 -05:00
libjpeg-turbo libjpeg-turbo: updated checksums and added autoreconf for older versions (#8411) 2018-06-06 16:18:03 -05:00
libksba
liblbxutil
liblockfile
libmatheval Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libmaxminddb Add package wireshark and dependencies (#8024) 2018-05-06 09:32:06 -05:00
libmesh
libmng
libmongoc libmongoc: Fix build (#9012) 2018-08-17 08:22:30 -05:00
libmonitor libmonitor: update version and add variant to configure (#8834) 2018-08-03 14:00:12 -04:00
libnbc
libnl libnl: new package (#7833) 2018-04-25 10:33:01 -05:00
libnova libnova: new package (#8666) 2018-07-09 16:16:09 -05:00
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
libpng
libpsl
libpthread-stubs
libquo Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
librom Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libshm Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libsigcpp new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
libsigsegv Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libsm
libsodium
libspatialindex
libsplash Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libssh add variants and conflicts for curl (#7804) 2018-04-19 07:23:16 -05:00
libssh2
libsvm
libszip
libtermkey
libtiff Add libtiff 4.0.9 (#8201) 2018-05-20 15:01:11 -05:00
libtool Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libunistring Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libunwind libunwind: add version 1.3-rc1 and variant xz (#8989) 2018-08-17 08:22:04 -05:00
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11 glvis@3.3: new package (#7166) 2018-04-17 07:48:48 -05:00
libxau
libxaw
libxaw3d
libxc
libxcb Add latest versions of libxcb and xcb-proto (#7650) 2018-04-10 11:47:02 -05:00
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2 Add libxml2 2.9.8 (#8211) 2018-05-20 15:04:47 -05:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence libxshmfence: Update to 1.3 (#8667) 2018-07-10 07:58:44 -05:00
libxslt
libxsmm Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
libxstream
libxt shoremap: new package (#7343) 2018-05-12 08:22:45 +02:00
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid LIKWID: Switch to perf_event backend to allow user installations but with limited features (#8886) 2018-08-06 09:21:30 -05:00
linkphase3 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
linux-headers
listres
llvm install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
llvm-openmp-ompt Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
lmdb
lmod lmod: add version 7.8 (#8838) 2018-07-31 23:19:41 -07:00
lndir
log4cplus Add new versions for log4cplus. (#8621) 2018-07-03 10:08:22 -05:00
log4cxx
loki A new package: loki. (#7908) 2018-04-26 08:37:03 -05:00
lordec lordec: Create new package. (#8095) 2018-05-14 16:56:49 -05:00
lrslib
lrzip Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
lsof
ltrace
lua Add unzip runtime dependency to lua package (#8831) 2018-08-05 13:26:22 -05:00
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
lumpy-sv
lwgrp
lwm2 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
lz4 add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
lzma
lzo
m4 Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
macsio Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mad-numdiff All git URLs end in .git 2018-07-25 23:10:10 -07:00
mafft
magics
magma
makedepend
mallocmc Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
man-db
manta manta: Create new package (#8043) 2018-05-07 17:22:43 -05:00
maq
mariadb
masa Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
masurca install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
matio
matlab style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
maven install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
maverick
mawk
mbedtls
mc Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
mcl
mdtest Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
med add MoFEM packages (#8700) 2018-07-22 15:26:30 -05:00
meep
mefit install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
megahit A new package: megahit. (#8471) 2018-06-14 13:45:12 -05:00
memaxes
meme
memkind Create new package: memkind (#8242) 2018-05-22 13:37:03 -05:00
meraculous Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mercurial
mesa Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
mesa-glu Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
meshkit
meson
mesquite
metabat metabat: Create new package (#7991) 2018-05-06 10:56:03 -05:00
metaphysicl
metasv
metis style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
mfem install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
microbiomeutil
minced
mindthegap Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
miniaero Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
miniamr Further improvements to version parsing 2018-07-25 23:10:10 -07:00
miniasm Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
miniconda2 Bump miniconda to 4.5.4. (#8435) 2018-06-10 15:15:43 -05:00
miniconda3 Bump miniconda to 4.5.4. (#8435) 2018-06-10 15:15:43 -05:00
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minixyce
minuit Added minuit package (#8536) 2018-06-22 11:27:25 -05:00
mira
mirdeep2 Package/mirdeep/fix for new url take2 (#8247) 2018-05-23 07:25:42 -05:00
mitofates mitofates: more deps and a patch to make it functional (#8686) 2018-07-12 10:23:22 +02:00
mitos Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mkfontdir
mkfontscale
mlhka Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
moab add necessary dependence on lapacak, and fix ld_flags for blas (#8776) 2018-07-22 16:32:47 -05:00
modern-wheel
mofem-cephas Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mofem-fracture-module Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mofem-minimal-surface-equation Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mofem-users-modules add MoFEM packages (#8700) 2018-07-22 15:26:30 -05:00
molcas
mono Add a new version 5.4.1.7 for mono. (#7866) 2018-04-23 07:31:29 -05:00
mosh
mothur mothur: mpi not used (#8706) 2018-07-13 20:31:25 -05:00
motif
motioncor2
mount-point-attributes add fgfs variant to stat and develop version (#8919) 2018-08-09 10:56:08 -05:00
mozjs
mpark-variant
mpc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
mpe2
mpest
mpfr Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
mpibash
mpiblast
mpich Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mpifileutils Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
mpilander Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mpileaks
mpip
mpir Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
mpix-launch-swift install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
mrbayes Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mrnet Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
mrtrix3 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
mscgen
msgpack-c Add msgpack-c 3.0.1 (#8264) 2018-05-24 10:47:31 -05:00
mshadow Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
multitail
multiverso Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mummer
mumps Change MUMPS to allow it to build with clang+xlf compiler combination (#8388) 2018-08-02 14:23:37 -04:00
munge
muparser
muscle
muse
muster
mvapich2 Bump mvapich2 to the latest v2.3 release. (#8892) 2018-08-06 12:03:33 +02:00
mxml
mxnet
nag
nalu Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nalu-wind Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
namd install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
nano
nanoflann
nanopb A new package: nanopb. (#7981) 2018-05-03 10:12:37 -05:00
nasm nasm: Fix compilation with GCC 8 (#8307) 2018-05-29 10:28:17 -05:00
nauty
ncbi-magicblast New package ncbi-magicblast (#8517) 2018-06-22 17:48:32 -05:00
ncbi-rmblastn
ncbi-toolkit style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
nccl
nccmp
ncdu
ncftp
ncl install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
nco nco: Find NetCDF (#8159) 2018-05-18 07:51:21 -05:00
ncurses Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
ncview
ndiff
nek5000 Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nekbone fix for issue #8845 (#8988) 2018-08-16 13:22:44 -06:00
nekcem Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nektar Adding nektar++ package (#8167) 2018-06-01 09:30:06 -05:00
neovim package neovim: add info for version 0.3.1 (#8866) 2018-08-02 13:04:59 -04:00
netcdf style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
netcdf-cxx
netcdf-cxx4 netcdf-cxx4: Update to use CPPFLAGS (#8148) 2018-05-21 16:23:35 -05:00
netcdf-fortran netcdf-fortran: enforce autoreconf when building with NAG. (#8844) 2018-08-02 08:32:20 -05:00
netgauge
netgen netgen should depend on zlib (#8473) 2018-06-14 13:43:43 -05:00
netlib-lapack Small patch for netlib-lapack. (#8854) 2018-08-01 18:55:07 -05:00
netlib-scalapack
netlib-xblas
nettle Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
neuron Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
nextflow
nfft nfft: added version 3.4.1 Moved package to github (#8099) 2018-05-12 17:25:28 +02:00
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nlohmann-json
nlopt Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nmap Added nmap version 7.70 (#8606) 2018-06-28 15:32:43 -05:00
nnvm Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
node-js
notmuch
npb
npm
npth
nspr
numactl numactl: fix build with glibc-2.26 (#8615) 2018-06-29 14:41:52 -05:00
numdiff
nut Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nwchem nwchem: add link type to python dep (#8759) 2018-07-19 12:03:40 -05:00
ocaml
occa install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
oce style: make core comply with pep8-naming 2018-07-19 00:41:36 -07:00
oclint
oclock
octave Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
octave-optim
octave-splines
octave-struct
octopus
of-adios-write Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
of-precice Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
omega-h omega-h: fix -std=c++11 build error (#8543) 2018-06-23 07:25:33 -05:00
ompss
ompt-openmp
oniguruma
ont-albacore added albacore version 2.3.1 (#8513) 2018-06-19 11:16:41 -05:00
opa-psm2
opam
opari2 Update scorep and friends to newest versions (#8171) 2018-05-17 19:52:01 -05:00
openbabel
openblas openblas: add version 0.3.2 (#8833) 2018-08-01 19:14:48 -05:00
opencoarrays
opencv Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
openexr
openfast Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openfoam-com install_tree: symlink handling and add 'ignore' option (#9019) 2018-08-17 22:08:38 -04:00
openfoam-org install_tree: symlink handling and add 'ignore' option (#9019) 2018-08-17 22:08:38 -04:00
openfst Add far variant to openfst package (#8299) 2018-05-28 13:45:56 -05:00
opengl Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
openglu Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
openjpeg
openmc Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openmpi Open MPI: add v2.1.5 (#9021) 2018-08-18 22:44:14 -05:00
opennurbs Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openpmd-api Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openscenegraph
openslide A new package: openslide. (#7906) 2018-04-26 07:17:15 +02:00
openspeedshop Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openspeedshop-utils Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openssh
openssl openssl: add new version 1.0.2o (#8486) 2018-06-15 09:54:52 +02:00
opium
opus
orfm
orthofinder
orthomcl
osu-micro-benchmarks
otf
otf2 Update scorep and friends to newest versions (#8171) 2018-05-17 19:52:01 -05:00
p4est
p7zip
pacbio-daligner Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pacbio-damasker Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pacbio-dazz-db Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pacbio-dextractor Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pagit
pagmo
paml
panda
pandaseq Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
pango
pangomm new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
papi papi: Update to 5.6.0 and fix build with %gcc@8 (#8796) 2018-07-26 10:02:07 -05:00
papyrus Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
paradiseo Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
parallel Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
parallel-netcdf Turning off parallel during make install for parallel-netcdf. (#8186) 2018-05-18 12:12:43 -05:00
paraver
paraview paraview: set PARAVIEW_VTK_DIR in spack_env and run_env (#8308) 2018-05-30 10:35:39 -05:00
parmetis
parmgridgen
parquet Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
parsimonator Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
parsplice Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
partitionfinder
patch Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
patchelf
pathfinder
pax-utils
pbbam pbbam: new package (#8365) 2018-06-07 22:44:30 -05:00
pbmpi Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pcma
pcre Add PCRE 8.42 (#8213) 2018-05-20 15:05:29 -05:00
pcre2 Add PCRE2 10.31 (#8214) 2018-05-20 15:05:47 -05:00
pdf2svg new package: py-weblogo (#7886) 2018-04-24 19:31:37 -07:00
pdftk new package: pdftk (#8166) 2018-06-12 11:25:20 -07:00
pdsh
pdt Add new versions for TAU and PDT package (#8497) 2018-06-17 17:21:00 -05:00
pegtl Further improvements to version parsing 2018-07-25 23:10:10 -07:00
pennant
percept Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
perl Make read only source file writeable in perl before patch to avoid failures on lustre filesystem. (#8764) 2018-07-22 16:51:59 -05:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-compress-raw-bzip2 A new perl package: perl-io-compress. (#8566) 2018-06-25 12:02:04 -05:00
perl-compress-raw-zlib A new perl package: perl-io-compress. (#8566) 2018-06-25 12:02:04 -05:00
perl-contextual-return Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo perl-devel-overloadinfo: Add version 0.005 (#7754) 2018-04-13 16:58:50 -05:00
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-depends
perl-extutils-makemaker
perl-extutils-pkgconfig Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
perl-file-copy-recursive Perl file copy recursive 0.40 (#7718) 2018-04-10 11:48:02 -05:00
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-gd-text
perl-graph
perl-graph-readwrite
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl py-mg-rast-tools: Create new package and its dependencies. (#7816) 2018-04-21 10:28:44 -05:00
perl-list-moreutils
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-cdf
perl-math-cephes perl-math-cephes: new package (#8671) 2018-07-11 12:40:39 -05:00
perl-math-matrixreal perl-math-matrixreal: Create new package (#7737) 2018-04-12 12:53:53 -05:00
perl-module-build
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose perl-moose: Add versions 2.2007,2.2009,2.2010 (#7758) 2018-04-13 19:08:13 -05:00
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl6-slurp perl6-slurp: new package (#8672) 2018-08-09 10:35:54 -05:00
perl-perlio-gzip
perl-perlio-utf8-strict perl-perlio-utf8-strict: Create new package (#7738) 2018-04-12 14:02:37 -05:00
perl-soap-lite Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-star-fusion Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
perl-statistics-descriptive
perl-statistics-pca perl-statistics-pca: Create new package (#7796) 2018-04-17 13:30:12 -05:00
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-simpletable perl-text-simpletable: Create new package (#7739) 2018-04-12 13:29:51 -05:00
perl-text-soundex perl-text-soundex: new package (#8279) 2018-05-25 14:00:12 -05:00
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-want perl-want: Create new package (#7734) 2018-04-12 12:24:28 -05:00
perl-www-robotrules
perl-xml-libxml
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml-libyaml
petsc Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pexsi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
pfft
pflotran Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pfunit pfunit: update (#7994) 2018-05-03 17:02:20 -05:00
pgdspider
pgi Bump pgi to 18.4. (#7980) 2018-05-03 10:12:17 -05:00
pgmath Package/flang: Updated to use own version of llvm (#8766) 2018-08-03 20:35:09 -04:00
phantompeakqualtools
phast New package: phast (#7993) 2018-06-04 13:22:47 -05:00
phasta Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
phist Phist 1.6.1 (#8933) 2018-08-10 12:53:18 -05:00
phylip
picard install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
pidx Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pigz Use GitHub URL for pigz, supports > 1 release (#8339) 2018-05-31 20:28:08 -05:00
pilon install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
pindel install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
piranha Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
pism Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pixman Fixed linking of R with MKL + configure issue in a dep (pixman) (#8449) 2018-06-22 08:03:47 -05:00
pkg-config
pkgconf Add pkgconf 1.4.2 (#8256) 2018-05-23 13:27:39 -05:00
planck-likelihood style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
plasma Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
platypus style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
plink plink: new source version 1.9-beta5 (#8076) 2018-05-12 18:38:22 -05:00
plplot GDL and missing dependencies (#8283) 2018-06-08 08:35:28 -05:00
plumed plumed: added versions 2.4.1 and 2.3.5 (#8297) 2018-05-28 08:01:51 -05:00
pmgr-collective
pmix pmix: add 1.2.5 and 2.0.3 bug fix releases (#8097) 2018-05-11 21:58:29 -05:00
pnfft Added gsl dependency to pnfft (#8255) 2018-05-24 16:24:47 -05:00
pngwriter Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pnmpi
poamsa
pocl Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
polymake
poppler All git URLs end in .git 2018-07-25 23:10:10 -07:00
poppler-data Add missing dependencies to poppler package (#8220) 2018-05-21 15:58:51 -05:00
porta
portage Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
postgresql
ppl
prank prank: Add version 170427 (#7755) 2018-04-13 16:58:39 -05:00
precice Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
presentproto
preseq
price
primer3
prinseq-lite prinseq-lite: Create new package (#7873) 2018-04-23 16:11:27 -05:00
printproto
prng Add new package: prng (#8396) 2018-06-06 12:07:16 -05:00
probconsrna
prodigal
proj Add PROJ 5.0.1 (#8233) 2018-05-23 13:29:08 -05:00
protobuf Add 3.5.2; Add optional cpp implementation enable for py-protobuf (#8069) 2018-05-09 20:52:39 -05:00
proxymngr
pruners-ninja
ps-lite Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
psi4
pslib GDL and missing dependencies (#8283) 2018-06-08 08:35:28 -05:00
psm Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
psmc Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pstreams
pugixml
pumi Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pv pv: initial commit (#8147) 2018-05-17 15:40:54 -05:00
pvm
pxz Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
py-3to2
py-4suite-xml
py-abipy
py-adios Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-affine
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-autopep8
py-avro added avro and avro_json_serializer python packages (#8351) 2018-06-01 15:06:27 -05:00
py-avro-json-serializer added avro and avro_json_serializer python packages (#8351) 2018-06-01 15:06:27 -05:00
py-babel
py-backcall Add py-backcall (#8701) 2018-07-13 10:59:02 -05:00
py-backports-abc
py-backports-functools-lru-cache Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
py-backports-shutil-get-terminal-size views: packages can customize how they're added to views (#7152) 2018-06-26 16:14:05 -07:00
py-backports-ssl-match-hostname views: packages can customize how they're added to views (#7152) 2018-06-26 16:14:05 -07:00
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format Package py-biom-format fixes (#8727) 2018-08-02 13:51:51 -04:00
py-biopython
py-bitarray
py-bitstring
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-breakseq2
py-brian
py-brian2 add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-bsddb3 py-bsddb3: update (#8006) 2018-05-03 19:20:14 -05:00
py-bx-python
py-cartopy add package py-cartopy and dependencies (#8406) 2018-06-07 08:10:39 -05:00
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi added py-cffi 1.11.5 (#8349) 2018-06-01 13:13:33 -05:00
py-chardet
py-checkm-genome
py-cheetah new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
py-click
py-cligj
py-cloudpickle Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-cnvkit Py cnvkit: updating dependencies (#8057) 2018-05-08 17:54:15 -05:00
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso py-crispresso: Create new package (#7990) 2018-05-03 13:09:59 -05:00
py-crossmap py-crossmap: needs py-setuptools (#8898) 2018-08-06 17:43:14 -05:00
py-cryptography
py-csvkit
py-current
py-cutadapt py-cutadapt: needs py-setuptools at runtime (#8689) 2018-07-11 14:53:35 -05:00
py-cvxopt
py-cycler
py-cython py-cython: added version 0.28.3 (#8379) 2018-06-05 13:36:29 -05:00
py-dask Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-dill
py-discover
py-dlcpar py-dlcpar: Add package description (#8032) 2018-05-07 06:44:16 -05:00
py-docopt Add py-docopt package (#8236) 2018-05-22 10:49:12 -05:00
py-docutils
py-doxypy
py-doxypypy
py-dryscrape Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-editdistance Fix www.example.com homepages (#7744) 2018-04-13 07:08:10 +02:00
py-elasticsearch
py-elephant add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-espressopp Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-et-xmlfile
py-eventlet add package py-eventlet (#7722) 2018-04-10 20:22:45 -05:00
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-flake8 add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-flake8-polyfill add py-pep8-naming package 2018-07-19 00:41:36 -07:00
py-flask add py-flask@0.12.2 (#7710) 2018-04-10 12:03:17 -05:00
py-flask-compress add package py-flask-compress (#7713) 2018-04-10 11:58:35 -05:00
py-flask-socketio add package py-flask-socketio (#7714) 2018-04-10 11:57:06 -05:00
py-flexx
py-fn py-fn: new package (#8705) 2018-07-13 20:31:39 -05:00
py-fparser Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-funcsigs
py-functools32
py-future
py-futures
py-gdbgui add package py-gdbgui (#7715) 2018-04-11 21:30:23 -05:00
py-genders
py-genshi
py-gevent add package py-gevent (#7712) 2018-04-10 20:24:11 -05:00
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet add package py-greenlet (#7720) 2018-04-10 20:22:28 -05:00
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-illumina-utils py-illumina-utils: Create new package (#7745) 2018-04-12 22:45:21 -05:00
py-imageio Add py-imageio for python3 (#8553) 2018-06-26 12:55:10 -05:00
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-kiwisolver fix dependencies for matplotlib@2.2.2 (#7735) 2018-04-12 12:53:30 -05:00
py-lark-parser Py-lark-parser: new package (#8761) 2018-07-19 14:00:19 -05:00
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property Adding lazy property python module (#47) (#8867) 2018-08-02 11:44:16 -05:00
py-lazyarray
py-libconf
py-libensemble Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite Update py-llvmlite to reflect llvm@6 requirement for versions >0.23.0 (#8109) 2018-05-14 11:26:01 -05:00
py-lmfit
py-localcider
py-locket Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-mappy
py-markdown
py-markupsafe
py-matplotlib add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-mccabe add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-mg-rast-tools Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-misopy
py-mistune
py-mock
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools py-more-itertools: new package (#8004) 2018-05-04 16:27:14 -05:00
py-mpi4py Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-mpmath py-mpmath: added version 1.0.0 (#8382) 2018-06-06 07:59:53 -05:00
py-multiprocess
py-multiqc
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort Package/geopm (#7560) 2018-04-17 07:51:56 -05:00
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba Updated llvm to version 6.0.1. The previous 6.0.0 had an incorrectly … (#8801) 2018-07-26 17:47:18 -05:00
py-numexpr update version for numexpr (#8702) 2018-07-13 15:50:21 -05:00
py-numexpr3 Add numexpr 3 (#8107) 2018-05-14 09:46:14 -05:00
py-numpy py-numpy: Add CPATH in modulefile (#8466) 2018-07-26 17:50:00 -05:00
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python A new package: py-openslide-python. (#7907) 2018-05-03 08:37:52 -05:00
py-opentuner Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-ordereddict
py-oset
py-owslib add package py-cartopy and dependencies (#8406) 2018-06-07 08:10:39 -05:00
py-packaging
py-palettable
py-pandas
py-paramiko
py-partd Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-pathlib2
py-pathos
py-pathspec
py-patsy add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-pbr
py-pep8-naming add py-pep8-naming package 2018-07-19 00:41:36 -07:00
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow Updating py-pillow with change in checksum for version 5.1.0. (#8547) 2018-06-22 18:02:27 -05:00
py-pip Added py-pip 10.0.1 and py-setuptools 39.2.0 (#8377) 2018-06-05 13:36:09 -05:00
py-pipits
py-pkgconfig py-pkgconfig: Made nose dependency type=build,test instead of just type=test, to prevent setuptools from silently installing its own copy of nose (#8749) 2018-07-18 21:42:04 -05:00
py-plotly
py-pluggy Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-ply py-ply: added version 3.11 (#8383) 2018-07-11 22:21:55 +02:00
py-pmw
py-poster py-mg-rast-tools: Create new package and its dependencies. (#7816) 2018-04-21 10:28:44 -05:00
py-pox
py-ppft
py-prettytable
py-proj Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-projectq Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-prompt-toolkit
py-protobuf Add 3.5.2; Add optional cpp implementation enable for py-protobuf (#8069) 2018-05-09 20:52:39 -05:00
py-psutil modified: var/spack/repos/builtin/packages/py-psutil/package.py (#8420) 2018-06-07 10:26:48 -05:00
py-psyclone Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-ptyprocess
py-pudb
py-py Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-py2bit
py-py2cairo add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-py2neo
py-py4j
py-pyani
py-pyasn1
py-pybedtools
py-pybigwig
py-pybind11 Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser pycparser: add version 2.18 (#8760) 2018-07-19 12:49:05 -05:00
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyepsg add package py-cartopy and dependencies (#8406) 2018-06-07 08:10:39 -05:00
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi add package py-pygdbmi (#7711) 2018-04-10 14:35:26 -05:00
py-pygments
py-pygobject
py-pygpu
py-pygtk
py-pylint Further improvements to version parsing 2018-07-25 23:10:10 -07:00
py-pymatgen
py-pyminifier
py-pymol py-pymol: new package (#7823) 2018-04-21 10:28:09 -05:00
py-pympler
py-pynn Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-pypar
py-pyparsing
py-pypeflow Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-pyprof2html
py-pyqi py-pyqi: new package (#8726) 2018-07-17 16:07:38 -05:00
py-pyqt
py-pyrad
py-pysam Bump pysam to 0.14.1. (#7988) 2018-05-04 22:11:26 -05:00
py-pyscaf
py-pyserial Fix base class for py-pyserial (#8633) 2018-07-02 22:47:56 -05:00
py-pyshp add package py-cartopy and dependencies (#8406) 2018-06-07 08:10:39 -05:00
py-pyside py-pyside: update (#8002) 2018-05-03 16:50:55 -05:00
py-pysocks
py-pysqlite py-pysqlite: Create new package (#8042) 2018-05-07 13:42:24 -05:00
py-pytables
py-pytest modified: var/spack/repos/builtin/packages/py-pytest/package.py (#8890) 2018-08-06 09:21:49 -05:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-engineio add package py-python-engineio (#7723) 2018-04-10 20:21:57 -05:00
py-python-gitlab
py-python-levenshtein
py-python-socketio add package py-python-socketio (#7721) 2018-04-11 14:21:37 -05:00
py-pythonqwt
py-pytorch Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-pytz
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-requests-toolbelt py-mg-rast-tools: Create new package and its dependencies. (#7816) 2018-04-21 10:28:44 -05:00
py-restview
py-rope
py-rpy2 added rpy2 2.9.4 and added py-jinja2 dependency (#8645) 2018-07-05 21:33:32 -05:00
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn py-scikit-learn: added version 0.19.1 and updated dependencies (#8399) 2018-06-06 07:41:48 -05:00
py-scipy Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
py-seaborn
py-setuptools Added py-pip 10.0.1 and py-setuptools 39.2.0 (#8377) 2018-06-05 13:36:09 -05:00
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sh
py-shapely add package py-cartopy and dependencies (#8406) 2018-06-07 08:10:39 -05:00
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline add version 2.0.9 to py-slurm-pipeline (#7771) 2018-04-16 10:13:06 -05:00
py-sncosmo
py-snowballstemmer
py-snuggs py-snuggs: Added depends_on py-parsing. The build uses setuptools, which would otherwise silently try to install pyparsing itself, presumably into the python home dir (obviously not ideal). (#8748) 2018-07-18 21:42:57 -05:00
py-spectra
py-spefile Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-spglib
py-sphinx add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
py-symfit
py-sympy py-sympy: added version 1.1.1 (#8381) 2018-06-05 13:42:18 -05:00
py-tabulate
py-tappy
py-terminado
py-testinfra py-testinfra: Add versions 1.12.0 and 1.13.0 (#8222) 2018-05-21 15:57:25 -05:00
py-tetoolkit
py-theano Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-tifffile
py-toml
py-tomopy
py-toolz Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits py-udunits: New package (#7998) 2018-05-05 17:33:44 -05:00
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv py-virtualenv: added version 16.0.0 (#8380) 2018-06-05 13:35:43 -05:00
py-virtualenv-clone
py-virtualenvwrapper
py-vmd-python added py-setuptools as dependency (#8843) 2018-08-02 11:24:26 -05:00
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-weblogo new package: py-weblogo (#7886) 2018-04-24 19:31:37 -07:00
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader py-yamlreader: new package (#7997) 2018-05-03 16:58:40 -05:00
py-yapf
py-yt Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-zmq
py-zope-event Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
py-zope-interface Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
python add patch for gcc@8 for python 2.7.14 (#8990) 2018-08-16 07:51:09 -05:00
qbank
qbox install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
qhull
qmcpack QMCPACK Spack Package Update (Summer 2018) (#9008) 2018-08-18 11:26:17 -05:00
qmd-progress Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
qorts install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
qrupdate
qt fix qt@5.8: build on systems without wayland (#8417) 2018-06-07 10:50:05 -05:00
qt-creator
qtgraph qtgraph and cbtf-argonavis create proper library paths in modules (#8797) 2018-08-17 15:58:08 -07:00
qthreads
quantum-espresso Further improvements to version parsing 2018-07-25 23:10:10 -07:00
quinoa Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
qwt
r install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
r-a4 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4base Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4classif Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4core Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4preproc Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4reporting Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-abadata
r-abaenrichment Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-abind
r-absseq Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-acde
r-acepack
r-acgh Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-acme Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aer r-aer: a new package. (#8567) 2018-06-28 15:40:00 -05:00
r-affxparser Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affycomp Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affycompatible Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affycontam Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affycoretools Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affydata
r-affyexpress Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyilm Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyio Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affypdnn Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyplm Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyqcreport Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyrnadegradation Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-agdex Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-agilp Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-agimicrorna Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aims Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aldex2 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-allelicimbalance Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-alpine Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-als
r-alsace Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-altcdfenvs Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-amap r-amap: new package (#8935) 2018-08-10 15:21:22 -05:00
r-ampliqueso Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-analysispageserver Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-anaquin Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aneufinder Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aneufinderdata Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annaffy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annotate r-annotate: new version (#9061) 2018-08-22 09:45:11 -05:00
r-annotationdbi r-annotationdbi : new version (#9040) 2018-08-21 14:15:17 -05:00
r-annotationfilter Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annotationforge Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annotationhub Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ape
r-argparse r-argparse: new package (#8944) 2018-08-13 22:21:30 -05:00
r-assertthat
r-backports
r-bamsignals Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-base64
r-base64enc
r-bbmisc Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-beanplot
r-bh
r-biasedurn r-biasedurn: new package (#8937) 2018-08-10 16:08:31 -05:00
r-bindr
r-bindrcpp r-bindrcpp: add new version (#8950) 2018-08-11 09:21:05 -05:00
r-biobase r-biobase: new version (#9038) 2018-08-21 14:15:42 -05:00
r-biocgenerics r-biocgenerics: new version (#9039) 2018-08-21 14:15:30 -05:00
r-biocinstaller Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biocparallel r-biocparallel: new version (#9046) 2018-08-21 14:13:27 -05:00
r-biocstyle Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biom-utils py-mg-rast-tools: Create new package and its dependencies. (#7816) 2018-04-21 10:28:44 -05:00
r-biomart Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biomformat Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biostrings r-biostrings: new version (#9048) 2018-08-22 12:21:43 +02:00
r-biovizbase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-bit
r-bit64
r-bitops
r-blob
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-bumphunter Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-c50
r-callr
r-car
r-caret
r-category Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-catools
r-cdcfluview r-cdcfluview: new package (#8089) 2018-05-12 18:28:18 -05:00
r-cellranger
r-cghflasso r-cghflasso v0 2 1 - new package (#8177) 2018-05-21 16:12:35 -05:00
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-clusterprofiler Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-cner Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-ctc r-ctc: new package (#8936) 2018-08-12 19:46:14 -05:00
r-cubature
r-cubist
r-curl
r-data-table r-data-table: package update (#7768) 2018-04-16 10:14:20 -05:00
r-dbi
r-dbplyr
r-delayedarray r-delayedarray: new version (#9053) 2018-08-22 09:39:52 -05:00
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-deseq2 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-desolve
r-devtools
r-diagrammer
r-dicekriging Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-dismo R dismo 1 1 4 - new package (#8176) 2018-05-17 19:50:19 -05:00
r-dnacopy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-do-db
r-domc
r-doparallel
r-dorng
r-dose Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger r-edger: new version (#8951) 2018-08-13 22:18:34 -05:00
r-ellipse
r-ensembldb Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-fastcluster r-fastcluster: new package (#8934) 2018-08-10 15:01:12 -05:00
r-fastmatch
r-ff
r-fftwtools
r-fgsea Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-filehash
r-findpython r-findpython: new package (#8943) 2018-08-11 09:23:34 -05:00
r-fit-models r-fit-models: Create new package (#8122) 2018-05-14 16:50:54 -05:00
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options Add list_url to allow download of prior versions from cran archive (#8141) 2018-05-15 22:10:20 -05:00
r-gbm
r-gcrma Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gdata
r-gdsfmt Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-geiger
r-genefilter r-genefilter: new version (#9063) 2018-08-22 09:45:56 -05:00
r-genelendatabase r-genelendatabase: new package (#8938) 2018-08-13 22:21:03 -05:00
r-geneplotter r-geneplotter: new version (#9060) 2018-08-22 09:44:48 -05:00
r-genie3 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-genomeinfodb r-genomeinfodb: new version (#9051) 2018-08-22 09:38:28 -05:00
r-genomeinfodbdata r-genomeinfodbdata: new version (#9050) 2018-08-22 09:37:56 -05:00
r-genomicalignments Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-genomicfeatures r-genomicfeatures: new version (#9057) 2018-08-22 09:41:38 -05:00
r-genomicranges r-genomicranges: new version (#9052) 2018-08-22 09:39:23 -05:00
r-geomorph
r-geoquery Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma r-glimma: new package (#8940) 2018-08-13 22:20:41 -05:00
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot r-goplot: new package (#8942) 2018-08-11 09:26:16 -05:00
r-gosemsim Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gostats Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gplots
r-graph Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gridbase
r-gridextra
r-gseabase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gviz Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-haven
r-hexbin
r-highr
r-hmisc r-hmisc: package update (#7766) 2018-04-16 10:16:00 -05:00
r-hms
r-htmltable r-htmltable: package update (#7767) 2018-04-17 07:26:37 -05:00
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ica
r-igraph
r-illuminaio Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-impute Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-influencer
r-inline
r-interactivedisplaybase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ipred
r-iranges r-iranges: new version (#9041) 2018-08-21 15:02:52 -05:00
r-irdisplay
r-irkernel Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-jomo r-mitml: new package and its dependencies r-jomo and r-pan (#8412) 2018-06-06 17:44:32 -05:00
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-keggrest Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r Add list_url to allow download of prior versions from cran archive (#8141) 2018-05-15 22:10:20 -05:00
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-limma r-limma: new version (#8952) 2018-08-13 22:18:12 -05:00
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr py-mg-rast-tools: Create new package and its dependencies. (#7816) 2018-04-21 10:28:44 -05:00
r-matrix r-matrix: package update (#7769) 2018-04-16 10:14:00 -05:00
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-mda
r-memoise
r-mergemaid Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-methodss3
r-mgcv
r-mgraster py-mg-rast-tools: Create new package and its dependencies. (#7816) 2018-04-21 10:28:44 -05:00
r-mice r-mice: new package (#8423) 2018-06-08 14:48:54 -05:00
r-mime
r-minfi Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-minqa
r-misc3d Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-mitml r-mitml: new package and its dependencies r-jomo and r-pan (#8412) 2018-06-06 17:44:32 -05:00
r-mixtools
r-mlbench
r-mlinterfaces Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-mlr Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-mlrmbo Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-mmwrweek r-mmwrweek: new pacakge (#8086) 2018-05-10 17:32:58 -05:00
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-multcomp
r-multtest Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-munsell
r-mvtnorm
r-mzid Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-mzr Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-oo
r-openssl
r-org-hs-eg-db Fix www.example.com homepages (#7744) 2018-04-13 07:08:10 +02:00
r-organismdbi Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-packrat
r-pacman
r-pamr
r-pan r-mitml: new package and its dependencies r-jomo and r-pan (#8412) 2018-06-06 17:44:32 -05:00
r-parallelmap Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-paramhelpers Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-party
r-partykit
r-pathview Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-pcapp
r-permute
r-pfam-db
r-phangorn Fix www.example.com homepages (#7744) 2018-04-13 07:08:10 +02:00
r-phantompeakqualtools
r-phyloseq Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-picante r-picante: Create new package (#8117) 2018-05-14 13:00:03 -05:00
r-pkgconfig
r-pkgmaker
r-plogr
r-plot3d Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-powerlaw
r-prabclus
r-praise
r-preprocesscore Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-prettyunits
r-proc r-proc v1 12 1 - New package (#8191) 2018-05-19 11:26:44 -05:00
r-prodlim
r-progress
r-protgenerics Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-proto
r-proxy
r-pryr
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-qvalue r-qvalue: new version (#9059) 2018-08-22 09:44:21 -05:00
r-r6
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-rbokeh
r-rcolorbrewer
r-rcpp Bump r-rcpp versions. (#8016) 2018-05-03 22:54:45 -05:00
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy r-rcppcnpy: a new package. (#8139) 2018-05-16 12:45:24 -05:00
r-rcppeigen r-rstan: new version and dependents (#8158) 2018-05-17 15:26:38 -05:00
r-rcppprogress
r-rcurl
r-rda Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-rhdf5 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-rhtslib Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
r-rinside Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-rots r-rots: new package (#8941) 2018-08-14 07:14:06 -05:00
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rsamtools r-rsamtools: new version (#9049) 2018-08-22 09:37:03 -05:00
r-rsnns
r-rsolnp New package r-spem (#7657) 2018-04-12 12:55:10 -05:00
r-rsqlite Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-rstan r-rstan: new version and dependents (#8158) 2018-05-17 15:26:38 -05:00
r-rstudioapi
r-rtracklayer r-rtracklayer: new version (#9056) 2018-08-22 09:43:25 -05:00
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors r-s4vectors: new version (#9043) 2018-08-21 14:14:05 -05:00
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-seurat
r-sf
r-sfsmisc Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-shape
r-shiny
r-shinydashboard r-shinydashboard: Create new package (#8116) 2018-05-14 13:00:18 -05:00
r-shortread Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-siggenes Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-simpleaffy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-sm r-sm: new package (#8945) 2018-08-11 09:22:21 -05:00
r-smoof Additional r packages (#7892) 2018-04-25 20:59:46 -05:00
r-sn
r-snow
r-snowfall
r-snprelate Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-som
r-somaticsignatures Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-sourcetools
r-sp
r-sparsem
r-spatial Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-spdep
r-speedglm
r-spem Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-splitstackshape r-splitstackshape: Create new package. (#8370) 2018-06-06 08:03:23 -05:00
r-sqldf
r-squash r-squash: Create new package (#8118) 2018-05-14 12:59:49 -05:00
r-stanheaders r-rstan: new version and dependents (#8158) 2018-05-17 15:26:38 -05:00
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-survey
r-survival
r-sva Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-topgo Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-trimcluster
r-truncnorm New package r-spem (#7657) 2018-04-12 12:55:10 -05:00
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utf8 r-utf8 v1.1.3 - New package (#8206) 2018-05-19 16:23:03 -05:00
r-utils
r-uuid
r-variantannotation Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-varselrf
r-vcd
r-vegan
r-vgam
r-vipor r-vipor: Create new package (#8128) 2018-05-14 16:38:59 -05:00
r-viridis
r-viridislite
r-visnetwork
r-vsn Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-whisker
r-withr
r-xde Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-xml
r-xml2
r-xtable
r-xts
r-xvector r-xvector: new version (#9045) 2018-08-21 14:13:39 -05:00
r-yaml
r-yapsa Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-yaqcaffy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-yarn Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-zlibbioc r-zlibbioc: new version (#9044) 2018-08-21 14:13:52 -05:00
r-zoo
racon new package: racon (bioinformatics) (#7726) 2018-04-22 07:54:48 -05:00
raft Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
ragel New colm, ragel packages (#7867) 2018-04-23 10:50:58 -05:00
raja Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
randfold
random123
randrproto
rankstr ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
rapidjson
ravel
raxml
ray
rdma-core rdma-core: new package (#7835) 2018-04-25 10:33:30 -05:00
rdp-classifier
re2c
readfq Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
readline Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
recordproto
redset ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
redundans
relion added relion version 3 (beta) (#8872) 2018-08-16 10:51:58 -05:00
rempi added ReMPI version 1.1.0 (#8548) 2018-06-22 17:03:41 -05:00
rename
rendercheck
renderproto
repeatmasker install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
resourceproto
revbayes
rgb
rhash
rlwrap
rmlab Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
rna-seqc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
rngstreams Add new package: rngstreams (#8395) 2018-06-06 12:10:56 -05:00
rockstar install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
root
rose Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
ross ROSS: added ROSS package (#8964) 2018-08-15 14:24:28 -07:00
rr add commented test dependencies (#8407) 2018-06-07 10:33:59 -05:00
rsbench
rsem
rstart
rsync
rtags
rtax
ruby Add url_for_version and list_url to Ruby package (#8216) 2018-07-06 07:22:38 -05:00
ruby-gnuplot
ruby-narray All git URLs end in .git 2018-07-25 23:10:10 -07:00
ruby-ronn Package/geopm (#7560) 2018-04-17 07:51:56 -05:00
ruby-rubyinline
ruby-svn2git New Package: ruby-svn2git (#7979) 2018-05-03 10:12:57 -05:00
ruby-terminal-table
rust Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
rust-bindgen
sabre Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sailfish Further improvements to version parsing 2018-07-25 23:10:10 -07:00
salmon salmon: adding in version restriction for boost (#8129) 2018-05-14 18:48:28 -05:00
sambamba Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
samblaster
samrai samrai: update package for 3.12.0 and fix compilation bugs for earlier versions (#8501) 2018-06-18 13:52:24 -05:00
samtools Add samtools 1.9 (#8961) 2018-08-12 18:54:50 -05:00
sandbox
sas
satsuma2 Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
savanna install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
saws Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sbt install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
scala Added the latest versions of a few packages (#7910) 2018-04-26 14:46:45 +02:00
scalasca
scalpel
scan-for-matches
scons
scorec-core Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
scorep scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
scotch Scotch: update package (#8711) 2018-07-15 15:54:28 -05:00
scr install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
screen Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
scripts
scrnsaverproto
sctk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
sdl2
sdl2-image
sed Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info added shared-mime-info version 1.9 (#8063) 2018-05-08 17:52:02 -05:00
shiny-server
shocklibs py-mg-rast-tools: Create new package and its dependencies. (#7816) 2018-04-21 10:28:44 -05:00
shoremap shoremap: new package (#7343) 2018-05-12 08:22:45 +02:00
shortbred
shortstack
showfont
shuffile ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
sickle
siesta
signalp
signify
silo silo: Make silo use AutotoolsPackage (#8551) 2018-06-22 17:19:03 -05:00
simplemoc simplemoc: version bump (#8884) 2018-08-03 14:31:06 -05:00
simul
simulationio Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
singularity Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sleef sleef: a new library. (#8198) 2018-05-19 11:26:31 -05:00
slepc slepc: add blopex variant (#8820) 2018-07-30 18:18:36 -05:00
slurm
smalt
smproxy
snakemake
snap Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
snap-berkeley
snap-korf
snappy Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
snbone Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sniffles
snpeff install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
snphylo install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sosflow Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sowing sowing: update to version used by current petsc -i.e 1.1.25-p1 (#8561) 2018-06-24 17:02:39 -05:00
sox
spades
spark install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
sparsehash
sparta
spdlog
spectrum-mpi Further improvements to version parsing 2018-07-25 23:10:10 -07:00
speex
spglib
sph2pipe
spherepack
spindle
spot
sqlite add sqlitebrowser (#8418) 2018-06-07 11:34:29 -05:00
sqlitebrowser add sqlitebrowser (#8418) 2018-06-07 11:34:29 -05:00
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sst-macro Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
stacks
staden-io-lib
star Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
star-ccm-plus
startup-notification
stat add fgfs variant to stat and develop version (#8919) 2018-08-09 10:56:08 -05:00
stc
stow Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
strace
stream Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
strelka
stress
stringtie
structure
sublime-text install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
subread subread: use compiler wrappers when compiling (#8328) 2018-06-01 10:30:47 +02:00
subversion
suite-sparse suite-sparse: add version 5.3.0 (#8837) 2018-08-02 07:25:57 +02:00
sumaclust
sundials Add new Sundials versions (#8075) 2018-05-09 20:53:25 -05:00
superlu
superlu-dist superlu_dist should be built with 'HAVE_PARMETIS=TRUE'. (#8917) 2018-08-08 20:50:48 -04:00
superlu-mt
supernova install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
sw4lite All git URLs end in .git 2018-07-25 23:10:10 -07:00
swap-assembler swap-assembler: Create new package. (#8144) 2018-05-17 15:43:30 -05:00
swarm
swfft All git URLs end in .git 2018-07-25 23:10:10 -07:00
swiftsim adds new version to swiftsim (#8093) 2018-05-11 10:32:30 -05:00
swig
symengine Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
sympol
sz sz: fix checksum for 2.0.2.0 (#8868) 2018-08-02 11:43:59 -05:00
tabix Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
talloc
tantan
tar Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
targetp
task task: Add version 2.5.1 (#8184) 2018-05-18 10:28:19 -05:00
taskd
tasmanian added Tasmanian versions 5.1 and development, enabled the Tasmanian options through +~ flags (#8804) 2018-07-27 10:10:32 -05:00
tassel Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
tau Add new versions for TAU and PDT package (#8497) 2018-06-17 17:21:00 -05:00
tcl tcl package: Install sources (#8153) 2018-06-08 11:10:40 -07:00
tcl-itcl Add package tcl-itcl (#8578) 2018-06-27 10:05:00 -05:00
tcl-tcllib
tcl-tclxml
tclap
tcoffee Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
tcptrace style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
tcsh style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
tealeaf
templight Templight package (#8782) 2018-07-26 11:19:14 -05:00
templight-tools Templight package (#8782) 2018-07-26 11:19:14 -05:00
tetgen
tethex Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
texinfo Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
texlive Create custom PATH that texlive requires in its module. (#8064) 2018-05-12 18:40:36 -05:00
the-platinum-searcher install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
the-silver-searcher
thrift Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
thrust
tig
tinyxml install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
tinyxml2
tioga Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
tk tk: Add version 8.6.8 (#7757) 2018-04-13 16:58:13 -05:00
tmalign
tmhmm
tmux Added the latest versions of a few packages (#7910) 2018-04-26 14:46:45 +02:00
tmuxinator Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
tophat Add Tophat v2.1.2, fixes automake issues (#8266) 2018-05-24 20:04:03 -05:00
tppred
transabyss
transdecoder transdecoder: needs perl-uri-escape (#8690) 2018-07-11 17:38:58 -05:00
transposome
transset
trapproto
tree
trf trf: make executable (#8265) 2018-05-24 10:47:17 -05:00
triangle
trilinos Trilinos: Update rules for superlu-dist version compatibility. (#8851) 2018-08-02 11:25:30 -05:00
trimgalore trimgalore: Use perl from env (#8318) 2018-05-30 12:31:05 -05:00
trimmomatic install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
trinity install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
trnascan-se
turbine
turbomole
tut
twm
tycho2 Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
typhon Unit test fixes 2018-07-25 23:10:10 -07:00
typhonio Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
uberftp
ucx ucx: needs numactl and rdma-core (#7836) 2018-04-25 10:34:55 -05:00
udunits2
ufo-core
ufo-filters
umpire Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
unblur
uncrustify Added support for uncrustify 0.67. (#8655) 2018-07-06 19:59:34 -05:00
unibilium
unison
units Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
unixodbc
unuran Add new package: unuran (#8397) 2018-06-11 08:41:32 -05:00
unzip
usearch
util-linux
util-macros
uuid
valgrind Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom Use GitLab's API endpoint for fetching a git snapshot. (#7881) 2018-04-26 16:40:11 -05:00
veclibfort Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
vegas2
veloc ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
velvet
verilator style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
verrou Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
videoproto
viennarna
viewres
vim Added vim 8.1 (#8185) 2018-05-18 12:07:05 -05:00
virtualgl
visit
vizglow
vmatch
voropp
votca-csg Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
votca-ctp Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
votca-tools Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
votca-xtp Further improvements to version parsing 2018-07-25 23:10:10 -07:00
vpfft Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
vpic Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
vsearch
vt vt: Create new package (#7947) 2018-04-30 12:11:06 -05:00
vtk Specify Python executable in VTK package (#9000) 2018-08-17 14:51:49 -05:00
vtkh Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
vtkm Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
wannier90 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
wcslib Add missing dependencies and variants to wcslib (#8603) 2018-07-05 21:36:29 -05:00
wget Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
wgsim Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
windowswmproto
wireshark Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
workrave install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
wt Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
wx Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto Add latest versions of libxcb and xcb-proto (#7650) 2018-04-10 11:47:02 -05:00
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xclip Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c Add Xerces-C++ 3.2.1 (#8208) 2018-05-20 15:04:06 -05:00
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhmm Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xhost
xineramaproto
xinit
xinput
xios Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr xrandr: needs randrproto (#7814) 2018-04-18 14:02:04 -05:00
xrdb
xrefresh
xrootd Update with recent versions through 4.8.3 and add variants. (#7933) 2018-04-27 10:11:33 -05:00
xrx
xsbench
xscope
xsd new package: XSD (#8784) 2018-08-02 16:28:19 -04:00
xsdk xsdk: add slepc and amrex [and handle clang conflict wrt amrex] (#8932) 2018-08-13 22:17:17 -07:00
xsdktrilinos Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xset
xsetmode
xsetpointer
xsetroot
xsimd Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xsm
xstdcmap
xtensor Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xtensor-python Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xterm
xtl Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash New package xxhash. (#8530) 2018-06-20 13:51:53 -05:00
xz Add xz 5.2.4 (#8202) 2018-05-20 15:01:33 -05:00
yajl Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
yambo Further improvements to version parsing 2018-07-25 23:10:10 -07:00
yaml-cpp Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
yasm Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
yorick install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
z3
zeromq Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
zfp
zip
zlib
zoltan zoltan: fix building with Intel compilers (#8985) 2018-08-15 10:40:58 -05:00
zsh packages: do not use generic checksum= in version() directives 2018-07-23 11:57:52 -07:00
zstd Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00