Adam J. Stewart 0b4e13c034 openssl package: add versions including 1.1.1c (#12342) ... * Add comment that 1.0.1 versions are no longer supported * Add comment that 1.0.2 versions are only supported up to December 2019 * Add versions 1.0.2s, 1.0.2r, and 1.0.2p * Add versions 1.1.0k, 1.1.0j, and 1.1.0i * Add version 1.1.1c * Add comment that 1.1.0 versions are only supported up to September 2019		2019-08-08 17:04:53 -07:00
..
abinit
abyss
accfft
ack
activeharmony
acts-core	ACTS package: add versions including 0.10.1 (#11606)	2019-06-18 11:00:02 -07:00
adept-utils
adios
adios2	adios2: Fix backwards compatibility version logic for FindMPI (#12241)	2019-08-02 15:27:47 -04:00
adlbx
adol-c
aegean
aida
alan
albany
albert
alglib
allinea-reports
allpaths-lg
alquimia
alsa-lib
aluminum
amber	New package: amber (starting at v16) (#11619)	2019-06-18 19:01:03 -07:00
amg	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
amg2013	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
aml
amp
ampliconnoise
amrex	Balay/amrex 19.08 (#12287)	2019-08-05 17:34:01 -05:00
amrvis
andi
angsd
ant
antlr
ants
aoflagger
aom
ape
aperture-photometry
apex
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
arborx	New package: ArborX (#11474)	2019-06-18 19:14:05 -07:00
archer
argobots
argp-standalone
argtable
arlecore
arm-forge
armadillo
arpack-ng
arrow
ascent
asciidoc
asciidoctor
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
assimp
astra
astral
astyle
at-spi2-atk
at-spi2-core
atk
atlas	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
atom-dft
atompaw
atop
augustus
autoconf
autodock-vina
autofact
autogen
automaded
automake
awscli	awscli: new package (#11796)	2019-06-23 14:54:48 -04:00
axel
axl
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
bbcp
bbmap
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc	bdw-gc: add variant for Multithreading (#12223)	2019-08-01 13:29:41 +02:00
bear
beast1
beast2
beast-tracer
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml	bib2xhtml: replace version and change the download url (#11837)	2019-06-28 11:03:54 -07:00
bigreqsproto
binutils	binutils: Adding Clang to narrowing conversion error workaround (#12029)	2019-07-15 23:42:02 -05:00
bioawk
biobloom
biopieces
bismark
bison
bitmap
blasr
blasr-libcpp
blast2go
blast-legacy
blast-plus	blast-plus package: remove --with-64 on ARM. (#11877)	2019-06-28 10:11:04 -07:00
blat
blaze
blis	modified: var/spack/repos/builtin/packages/blis/package.py (#12225)	2019-08-01 09:37:23 -05:00
bliss
blitz
bmake
bmi	update web site and git url for BMI package (#12036)	2019-07-17 21:28:39 -05:00
bml	bml: add v1.3.1 (#11856)	2019-06-27 10:57:09 -06:00
bohrium
bolt	packages: Add autotools dependencies to bolt (#12246)	2019-08-02 12:22:51 -07:00
bookleaf-cpp
boost	boost: use clang toolset when building with Fujitsu compiler. (#11827)	2019-07-15 15:13:04 -07:00
boostmplcartesianproduct
bowtie
bowtie2	bowtie2: Add version 2.5.3.1 and fix to build on ARM (#11974)	2019-07-11 22:04:22 -05:00
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
breakdancer
breseq
bridger
brigand
brotli
bsseeker2	Allow bsseeker to build with Python 3 (#12075)	2019-07-30 17:11:14 -05:00
bucky
bumpversion
busco
butter
butterflypack	added a package butterflypack (#12222)	2019-08-02 18:58:30 -05:00
bwa
bwtool
byobu
bzip2	bzip2: Add 1.0.8 (#12017)	2019-07-14 14:25:20 -05:00
c-blosc	c-blosc package: Add -std=gnu99 flag for gcc (#11959)	2019-08-05 18:04:16 -07:00
c-lime
cabana
caffe
cairo
cairomm
caliper
callpath
camellia	camellia: fix hdf5 dependency (#11810)	2019-07-01 13:40:53 -04:00
candle-benchmarks
cantera
canu
cap3
capstone
cardioid
cares
casacore
cask
casper
catalyst	catalyst package: Fix paths used for intermediate code generation (#12082)	2019-07-29 15:31:07 -07:00
catch	catch: more versions, new and older. (#12123)	2019-07-25 11:33:03 -05:00
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell	cbtf-krell: fixed to build on ARM. (#11859)	2019-06-27 11:55:15 +02:00
cbtf-lanl
ccache
ccfits
cctools
cdbfasta
cdd
cddlib
cdecimal
cdhit
cdo	cdo: Remove obsolete patch (#11854)	2019-06-26 19:36:41 -05:00
ceed
cereal
ceres-solver
cfitsio	make cfitsio explicitly depend on curl (#12016)	2019-07-14 14:40:09 -05:00
cgal
cgdb	New package: cgdb (#12154)	2019-07-29 17:19:53 -07:00
cgm
cgns
channelflow
chapel
charliecloud	add charliecloud v0.10 (#12046)	2019-07-17 21:28:02 -05:00
charmpp
chatterbug
check
chill	New packages: Chill and IEGenLib (#11406)	2019-06-27 13:41:06 -07:00
chlorop
chombo
chrpath
cinch	Added Cinch Spackage (#11759)	2019-06-18 16:45:58 -05:00
circos
cistem	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
citcoms
cityhash
clamav	Fix pkgconfig dependencies (#11864)	2019-06-27 14:56:42 +02:00
clamr
clapack
claw
cleaveland4
cleverleaf
clfft
clhep
clingo
cln
cloc
cloog
cloverleaf
cloverleaf3d
clp
clustalo
clustalw
cmake	update cmake 3.15.1 checksum (#12182)	2019-07-29 15:13:52 -04:00
cmocka
cmor	CMOR package: add version 3.4.0 (Python3-compatible) (#12076)	2019-07-29 16:12:37 -07:00
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
connect-proxy
constype
converge
coreutils
corset
cosmomc
cosp2
cotter
cowsay
cp2k
cppad
cppcheck
cppgsl
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cquery
cram
cryptopp
cscope
csdp
ctffind	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
cub
cube
cubelib
cubew
cuda	find_libraries searches lib and lib64 before prefix (#11958)	2019-07-12 17:46:47 -07:00
cuda-memtest
cudnn
cufflinks
cups
curl
cvs
czmq
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dateutils
davix
dbcsr
dbus
dcmtk
dd4hep
dealii
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign-tx	dialign-tx: build on ARM. (#12210)	2019-08-02 19:02:36 -05:00
diamond
diffsplice	diffsplice package: remove -m64 on ARM. (#11899)	2019-07-08 17:13:49 -07:00
diffutils
dimemas	New package: dimemas (#11979)	2019-07-11 13:55:43 -07:00
direnv
discovar
discovardenovo
dislin
diy
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
draco	Add a new version (7.2) of draco. (#11852)	2019-07-28 22:15:21 -05:00
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst
dysco
ea-utils
easybuild
ebms
eccodes	Add eccodes 2.13.0 (#12077)	2019-07-30 17:11:29 -05:00
ecflow
eclipse-gcj-parser
ecp-io-sdk
ecp-proxy-apps
ecp-viz-sdk
ed
editline
editres
eigen
elasticsearch
elemental
elfutils
elk
elmer-fem
elpa
elsd
elsdc
elsi	New Package: ELSI (#11605)	2019-06-18 18:30:57 -07:00
emacs
ember	remove binary file that got added inadvertently via #11828 (#11848)	2019-06-25 21:31:36 -04:00
emboss
energyplus
entrezdirect
environment-modules	environment-modules package: add version 4.3.0 (#12155)	2019-07-27 12:20:39 -05:00
eospac	eospac package: replace md5 checksums with sha256 (#11757)	2019-06-18 19:20:35 -07:00
eqr
er
erfa
ermod	ermod: new package (#12192)	2019-08-02 19:08:35 -05:00
erne
es
esmf
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exmcutils
exodusii
exonerate	exonerate use autotools. (#11805)	2019-06-21 07:55:29 -04:00
expat
expect
express
extrae
exuberant-ctags
eztrace
f18	F18: Fix the location to the f18 binary (#12186)	2019-07-31 15:43:08 +02:00
f90cache	f90cache: change the download url (#11838)	2019-06-27 12:55:48 -04:00
fabtests
falcon
faodel	FAODEL: Add 1.1906.1 (#12180)	2019-08-02 19:14:21 -05:00
fast-global-file-status
fasta
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics	fenics, llvm: Fix package names being overriden (#11879)	2019-06-28 15:59:19 +02:00
fermi
fermikit
fermisciencetools
ferret	Ferret: add version 7.2 and adjust dependencies (#11921)	2019-07-09 09:33:07 -04:00
ffmpeg
fftw
fgsl	New package: fgsl: fortran interface to GSL (#11775)	2019-06-19 10:59:11 -07:00
figtree
fimpute
findutils
fio
fish
fixesproto
flac
flang
flann
flash
flatbuffers
flatcc
flecsale
flecsi	Add llvm as deps when static analyzer is enabled (#11888)	2019-07-02 11:45:13 -06:00
flex
flint
flit
fltk	fltk: fix about variable types (#12292)	2019-08-06 11:07:27 -07:00
flux-core
flux-sched
fluxbox
fmt	Update checksum of fmt 5.3.0 (#12037)	2019-07-28 22:07:51 -05:00
foam-extend	Rename build logs and make names consistent (#11806)	2019-07-11 13:32:06 -07:00
folly
font-util	Small fixes for font-util package (#12148)	2019-07-26 10:32:39 -05:00
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fqtrim
fr-hit
freebayes
freeglut
freetype	Add conflicts statement to freetype for icc (#12111)	2019-07-24 12:33:24 -05:00
freexl
fseq
fsl
fslsfonts
fstobdf
fstrack
ftgl
funhpc
fyba
fzf
g4abla	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4emlow	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4ensdfstate	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4ndl	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4neutronxs	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4photonevaporation	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4pii	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4radioactivedecay	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4realsurface	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4saiddata	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
g4tendl	Geant4 data packages: Set the install path name explicitly. (#12244)	2019-08-02 13:48:35 -05:00
gapbs
gapcloser
gapfiller
gasnet
gatk
gaudi
gaussian
gawk
gblocks
gcc	gcc: support without command line tools (#11040)	2019-07-22 16:53:50 -05:00
gccmakedep
gccxml
gconf
gcta
gdal	Add GDAL 3.0.1 (#12140)	2019-07-26 09:25:35 +02:00
gdb	gdb: add version 8.3 (#12018)	2019-07-14 16:45:55 -05:00
gdbm
gdk-pixbuf
gdl	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
geant4	geant4: improvements with respect to building against CLHEP. (#12124)	2019-07-25 08:58:13 -05:00
geant4-data
gearshifft
gemmlowp
genemark-et
genomefinisher	genomefinisher: fixed query on jdk instead of java (#12196)	2019-07-31 08:55:56 +02:00
genometools
geopm
geos	Add GEOS 3.7.2 (#11734)	2019-06-17 20:58:43 -04:00
gettext	Fix QT4 build for mac (#10944)	2019-08-01 10:22:35 -07:00
gflags
ghost
ghostscript
ghostscript-fonts
giflib
ginkgo	ginkgo: add maintainers (#12273)	2019-08-04 20:36:04 -05:00
git
git-fat-git
git-imerge
git-lfs	git-lfs: add version 2.8.0 (#12131)	2019-07-25 19:46:03 -05:00
gl2ps
glew
glfmultiples
glib	glib: fix glib dependency build fixes #9992 (#12153)	2019-08-02 15:18:04 -05:00
glibmm
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap
gmime
gmodel
gmp
gmsh
gmt
gmtsar
gnat
gnu-prolog
gnupg
gnuplot	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
gnutls	gnutls: workaround guile build error on macos (#11751)	2019-06-25 13:08:28 -04:00
go
go-bootstrap
gobject-introspection
googletest	googletest: Fix reversed +pthreads option (#12128)	2019-07-25 19:50:23 -05:00
gotcha	Gotcha package: fixed to build on ARM. (#11840)	2019-06-27 15:34:11 -07:00
gource
gperf
gperftools
gpgme
gplates	Restrict gplates to proj@:5 (#11761)	2019-06-18 15:15:14 -04:00
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz	graphviz package: add MacOS fixes and quartz support (#11128)	2019-08-06 16:26:45 -07:00
grass	GRASS GIS does not yet support PROJ.6 (#11762)	2019-06-17 20:59:12 -04:00
grib-api
grnboost
groff
gromacs	gromacs: added version 4.5.5 (#12197)	2019-07-30 16:07:07 +02:00
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guidance
guile
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz
harminv
hc
hdf
hdf5
hdf5-blosc
help2man
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea
hmmer
homer
hoomd-blue
hotspot
hpccg
hpctoolkit	hpctoolkit: add version gpu and variant cuda (#12068)	2019-07-21 22:29:08 -07:00
hpcviewer	hpcviewer: update sha sums for version 2019.07 (#12236)	2019-08-02 18:55:46 -05:00
hpgmg	hpgmp package: Don't add cpu=native on ARM when using gcc 5.x or before (#12034)	2019-07-29 16:53:59 -07:00
hpl
hpx	Added HPX version 1.3.0. (#12025)	2019-07-15 20:54:54 -05:00
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hugo
hunspell
hwloc
hybpiper
hydra
hydrogen
hyphy
hypre	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
i3
ibm-java	hpcviewer: add version 2019.07 (#12067)	2019-07-20 10:07:15 -07:00
ibmisc
iceauth
icedtea
icet
ico
icu4c
id3lib
idba
iegenlib	New packages: Chill and IEGenLib (#11406)	2019-06-27 13:41:06 -07:00
igraph
igvtools	igvtools: fixed query on jdk instead of java (#12195)	2019-07-31 14:49:51 +02:00
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel	Add auto-dispatch specification to Intel packages (#11697)	2019-07-15 11:37:54 -07:00
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio	Add auto-dispatch specification to Intel packages (#11697)	2019-07-15 11:37:54 -07:00
intel-pin
intel-tbb
intel-xed	Resources: use expanded archive name by default (#11688)	2019-06-20 11:09:31 -07:00
interproscan	interproscan: new package at 5.36-75.0 (#12130)	2019-07-25 19:49:42 -05:00
intltool
ioapi	ioapi: add version 3.2 (#12088)	2019-07-23 12:10:01 -05:00
ior
iozone
iperf2
iperf3
ipopt
isaac
isaac-server	isaac-server: Don't add -march=native on ARM and gcc 5.x or before. (#12042)	2019-07-23 16:48:25 -05:00
isl
itstool
itsx
jackcess
jags
jansson
jasper
jbigkit
jchronoss
jdk	jdk: Add JDK 12.0.2_10 (#12081)	2019-07-22 12:40:11 -05:00
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-fortran
json-glib
jsoncpp	Preventing jsoncpp from building tests (#11948)	2019-07-31 12:18:25 -05:00
jube	Set default resource manager to 'none' (#12092)	2019-08-02 19:23:14 -05:00
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kdiff3
kealib	kealib: fix incorrect md5sum for v1.4.11 (#12126)	2019-07-26 15:14:46 -05:00
kentutils
kibana
kim-api	kim-api: added version 2.1.2 (#12189)	2019-07-31 09:13:13 +02:00
kitty
kmergenie
kokkos
kraken
krb5
krims
kripke	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
kvasir-mpl
kvtree
ladot
laghos	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
lame	lame & libmad: Added two new packages for sox mp3 support. (#11964)	2019-07-25 10:40:50 -05:00
lammps	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
last
lastz
latte
launchmon	patch launchmon to fix char * conversion error (#12219)	2019-07-31 16:47:35 -05:00
lazyten
lbann
lbxproxy
lbzip2
lcals	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
lcms
ldc
ldc-bootstrap
legion	Add HDF5 variant to Legion package (#12221)	2019-08-01 10:33:29 -06:00
lemon
leveldb	leveldb: add 1.22 (#12044)	2019-07-19 09:26:09 -05:00
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbeato
libbsd
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libeatmydata
libedit
libelf
libemos
libepoxy	add glx variant to libepoxy (#11814)	2019-06-24 17:57:17 -04:00
libev
libevent
libevpath
libfabric	Add EFA fabric to libfabric	2019-07-23 12:08:33 -07:00
libffi
libffs
libflame	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libiberty
libice
libiconv
libidn2
libint
libjpeg
libjpeg-turbo	libjpeg-turbo: set compiler flags with CMake args (#11938)	2019-07-17 15:37:18 -07:00
libksba
liblbxutil
liblockfile
libmad	lame & libmad: Added two new packages for sox mp3 support. (#11964)	2019-07-25 10:40:50 -05:00
libmatheval
libmaxminddb
libmesh
libmng
libmo-unpack	New packages: libmo-unpack and py-mo-pack (#11895)	2019-07-01 18:24:45 -07:00
libmongoc
libmonitor
libnbc
libnl
libnova
libnrm	New packages: nrm and libnrm (#11777)	2019-06-20 19:21:44 -07:00
libnsl
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libplist
libpmemobj-cpp
libpng
libpsl
libpthread-stubs
libquo
librom
libseccomp
libsharp	libsharp: Don't add -march=native on ARM (#12064)	2019-07-21 21:56:14 -05:00
libshm
libsigcpp
libsigsegv
libsm
libsodium
libspatialindex
libspatialite	Restrict libspatialite to proj@:5' (#11752)	2019-06-17 23:48:16 -04:00
libsplash
libssh
libssh2
libsvm
libszip
libtasn1
libtermkey
libtiff
libtirpc
libtomlc99	libtomlc99: Update version	2019-06-30 16:02:08 -07:00
libtool	libtool: execute autoreconf at ver.2.4.2 (#11913)	2019-07-03 18:04:29 -07:00
libunistring
libunwind
libusb
libusbmuxd
libuuid
libuv
libvdwxc
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc	libxc: Make configure recognize Fujitsu compiler (#12147)	2019-07-26 12:09:52 -05:00
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm	libxpm: cope with system gettext if configured. (#10881)	2019-07-19 08:36:58 -05:00
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm	LIBXSMM package: add version 1.13 and optional shared libs (#11998)	2019-07-29 17:14:41 -07:00
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml
libyogrt
libzip
liggghts	liggghts: added version 3.8.0 (#12242)	2019-08-02 18:53:06 -05:00
lighttpd
likwid	likwid package: Fix build with version 4.3.4 (#11878)	2019-06-28 10:05:38 -07:00
linkphase3
linux-headers
listres
llvm	LLVM package: add optional libomp_tsan support (#11793)	2019-07-29 12:23:15 -07:00
llvm-openmp	Fix scikit-learn build with Apple clang (#11496)	2019-07-17 21:27:16 -05:00
llvm-openmp-ompt	Fix scikit-learn build with Apple clang (#11496)	2019-07-17 21:27:16 -05:00
lm-sensors
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsf
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit	luit package: use autotools. (#11962)	2019-07-11 13:34:50 -07:00
lulesh	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
lumpy-sv
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
mad-numdiff
mafft
magics	Add Magics 4.1.0 (#12078)	2019-07-30 17:11:47 -05:00
magma	Add version 2.5.1 of MAGMA released today (#12274)	2019-08-04 20:36:48 -05:00
makedepend
mallocmc
man-db
manta
mapserver	Specify which versions of PROJ work with MapServer (#11764)	2019-06-17 21:34:54 -04:00
maq
margo
mariadb
mariadb-c-client
masa
masurca
mathematica	Rename build logs and make names consistent (#11806)	2019-07-11 13:32:06 -07:00
matio
matlab
maven
maverick
mawk
mbedtls
mc
mcl
mdtest
med
meep
mefit
megadock
megahit	megahit package: add patch to build on ARM. (#11963)	2019-07-11 17:40:00 -07:00
memaxes
meme
memkind
memsurfer
meraculous
mercurial
mercury
mesa
mesa-glu
meshkit
meson
mesquite
metabat
metaphysicl
metis
mfem
mgis
microbiomeutil
migrate
mii	mii: new package at 1.0.2 (#12184)	2019-07-30 16:16:41 -05:00
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2	minimap2, py-mappy: change dependency and build on ARM (#12127)	2019-08-02 19:21:33 -05:00
minimd
miniqmc
minisign
minismac2d
minitri
minivite	Bumping-up miniVite to version 1.1 (#11828)	2019-06-24 19:41:01 -06:00
minixyce
minuit
mira
mirdeep2
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
mmg
moab
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-cxx-driver
mono
montage
mosh
mothur
motif	motif package: fix the download url (#11939)	2019-07-08 16:20:01 -07:00
motioncor2
mount-point-attributes	fix mpa package build error with a patch (#12217)	2019-07-31 16:48:06 -05:00
mozjs
mpark-variant
mpc
mpdecimal
mpe2	mpe2 use autotools and add libx11 dependency. (#11807)	2019-06-21 07:54:51 -04:00
mpest
mpfr
mpibash
mpiblast
mpich	mpich: Add 3.3.1 (#11976)	2019-07-10 20:41:23 -05:00
mpifileutils
mpilander
mpileaks	Update Package Creation Tutorial for PEARC19 (#12209)	2019-07-31 12:54:09 -05:00
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
msmc
multitail
multitime
multiverso
mummer
mumps
munge
muparser
muscle
muse
musl	Packages/musl (#12288)	2019-08-05 20:16:14 -05:00
muster
mutationpp	package mutationpp: add new version: 1.0.0 (#12035)	2019-07-16 11:55:53 -05:00
mvapich2
mxml
mxnet
mysql	mysql package: New versions, add conflicts, cope with use of dtrace. (#11356)	2019-08-02 10:51:02 -07:00
nag
nalu
nalu-wind
namd
nano
nanoflann	nanoflann: Don't add -mtune=native on ARM and gcc 5.x (#12093)	2019-07-23 16:47:28 -05:00
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit	ncbi-toolkit: add version 22_0_0 (#12278)	2019-08-07 14:18:36 -05:00
nccl
nccmp
ncdu
ncftp
ncl	ncl: Fix build (#11855)	2019-06-26 19:36:29 -05:00
nco
ncurses	ncurses: fix pic and opt flags (#12272)	2019-08-06 22:21:25 -05:00
ncview
ndiff
nek5000
nekbone
nekcem
nektar
nektools
neovim
nest
netcdf
netcdf-cxx
netcdf-cxx4
netcdf-fortran	Bump netcdf-fortran version to 4.4.5 (#11790)	2019-06-19 17:38:17 -05:00
netgauge
netgen
netlib-lapack
netlib-scalapack
netlib-xblas
nettle
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
nim	New package: Nim (#11649)	2019-07-12 17:03:26 -07:00
ninja
ninja-fortran
nix
nlohmann-json
nlopt
nmap
nnvm	nnvm: cmake bug is fixed. (#12113)	2019-07-24 12:31:49 -05:00
node-js
notmuch
npb
npm
npth
nrm	New packages: nrm and libnrm (#11777)	2019-06-20 19:21:44 -07:00
nseg
nspr
ntpoly
numactl
numdiff
nut
nvptx-tools
nwchem
nyancat
ocaml
occa
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write	openfoam: rename openfoam-com to openfoam (#11876)	2019-07-01 22:54:36 -07:00
of-catalyst	openfoam: rename openfoam-com to openfoam (#11876)	2019-07-01 22:54:36 -07:00
of-precice	openfoam: rename openfoam-com to openfoam (#11876)	2019-07-01 22:54:36 -07:00
omega-h
ompss
ompt-openmp	Fix scikit-learn build with Apple clang (#11496)	2019-07-17 21:27:16 -05:00
oniguruma
ont-albacore
opa-psm2	opa-psm2 package: correct installation prefixes and add 11.2.77 (#11658)	2019-07-02 10:34:58 -07:00
opam
opari2
openbabel
openblas
opencoarrays	package opencoarrays: add new version: 2.7.1 (#12043)	2019-07-17 12:11:02 -05:00
opencv
openexr
openfast
openfoam	OpenFOAM package: update download url (#11973)	2019-07-11 13:45:38 -07:00
openfoam-org	Rename build logs and make names consistent (#11806)	2019-07-11 13:32:06 -07:00
openfst
opengl	OpenGL package: always provides gl (#12158)	2019-07-29 12:11:53 -07:00
openglu
openimageio
openjdk	openjdk (#10446)	2019-07-22 13:11:45 -05:00
openjpeg
openkim-models	update to kim-api-2.1.1 and openkim-models-2019-07-25 (#12137)	2019-07-26 13:06:10 -05:00
openmc
openmpi	OpenMPI: add support for pbs/tm at configure. (#10620)	2019-07-03 14:07:51 -07:00
opennurbs
openpa
openpmd-api	openPMD-api: pre-load depend libs (#12279)	2019-08-05 14:02:23 -05:00
openscenegraph
openslide
openspeedshop
openspeedshop-utils
openssh
openssl	openssl package: add versions including 1.1.1c (#12342)	2019-08-08 17:04:53 -07:00
opium
optional-lite
opus
orca
orfm
orthofiller
orthofinder
orthomcl
osmctools
osu-micro-benchmarks	osu-micro-benchmarks: add version 5.6.1 (#11779)	2019-06-19 11:04:03 -07:00
otf	OTF package: use autotools. (#11873)	2019-06-28 10:13:21 -07:00
otf2
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal
paml
panda
pandaseq
pango
pangomm
papi
papyrus
paradiseo
parallel
parallel-netcdf
paraver	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
paraview	vtk, paraview, catalyst packages: Add maintainers (#11774)	2019-06-19 10:57:19 -07:00
parmetis
parmgridgen
parquet
parsimonator	parsimonator: Enable build on non x86_64 hosts. (#12194)	2019-08-02 19:07:43 -05:00
parsplice
partitionfinder	Rename py-pytables -> py-tables (#11847)	2019-06-25 21:32:49 -04:00
pasta
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
perl	Perl take in flags (#12112)	2019-07-24 12:32:49 -05:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-logger-simple
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intspan
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml
perl-yaml-libyaml
petsc	petsc: add version 3.11.3 (#11857)	2019-06-27 07:02:03 +02:00
pexsi
pfft
pflotran
pfunit	pfunit: fixed a typo (#11843)	2019-06-25 14:06:52 -04:00
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist	phist: added version 1.8.0 (#12201)	2019-07-31 15:35:59 +02:00
phrap-crossmatch-swat
phred
phylip
phyluce
picard	Rename build logs and make names consistent (#11806)	2019-07-11 13:32:06 -07:00
picsar
picsarlite
pidx
pigz
pilon
pindel
piranha
pism	PISM package: add version 1.1.4 (#12083)	2019-07-29 15:26:03 -07:00
pixman
pkg-config
pkgconf	pkgconf: Add 1.6.1 (#11863)	2019-06-27 22:15:04 +02:00
planck-likelihood	planck-likelihood: remove -m64 on ARM (#11902)	2019-07-01 10:48:45 -07:00
plasma	Version 19.8.1 of PLASMA (#12299)	2019-08-07 00:08:59 -05:00
platypus
plink
plplot	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
plumed
pmdk	PMDK package: requires ncurses dependency (#11868)	2019-06-28 10:15:06 -07:00
pmgr-collective
pmix	added version 3.1.3 of PMIx (#12055)	2019-07-18 13:59:02 -05:00
pnfft
pngwriter
pnmpi
poamsa
pocl
polymake
poppler
poppler-data
porta
portage	portage: add v1.2.2 (#11842)	2019-06-28 06:39:26 -06:00
portcullis	portcullis package: remove -m64 on aarch64. (#11905)	2019-07-02 10:42:06 -07:00
postgresql
powerapi	package: Add powerapi package (#11845)	2019-07-09 09:57:53 -04:00
ppl
pplacer
prank
precice	preCICE package: add version 1.5.2 (#11949)	2019-07-08 13:59:08 -07:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj	Add PROJ.6 (#11730)	2019-06-17 23:46:42 -04:00
protobuf
proxymngr
prrte	pkg PRRTE: added version 1.0.0 (#12054)	2019-07-18 13:59:39 -05:00
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi	pumi: new version 2.2.1 (#12282)	2019-08-06 22:09:46 -05:00
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py	Add py-setuptools as a build dependency for py-absl-py (#12109)	2019-07-24 12:33:45 -05:00
py-adios
py-advancedhtmlparser
py-aenum
py-affine
py-alabaster
py-alembic
py-antlr4-python3-runtime	py-antlr4-python3-runtime: new package (#11890)	2019-07-04 10:12:54 -04:00
py-apache-libcloud
py-apipkg	package/py-apipkg add new version, add sha256 sums (#12260)	2019-08-03 18:38:34 -05:00
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astor	New package py-astor (and test dependency py-astunparse) (#11813)	2019-06-23 17:33:22 -04:00
py-astroid
py-astropy	py-astropy: added latest version 3.2.1 (#11967)	2019-07-09 21:19:38 -04:00
py-astunparse	New package py-astor (and test dependency py-astunparse) (#11813)	2019-06-23 17:33:22 -04:00
py-async-generator
py-atomicwrites
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-backports-tempfile	new package: py-backports-tempfile (#12261)	2019-08-04 16:10:24 -05:00
py-backports-weakref	new package: py-backports-weakref (#12262)	2019-08-03 18:37:10 -05:00
py-basemap	py-basemap: install without egg (#11961)	2019-07-15 10:26:13 -04:00
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biomine
py-biopython
py-bitarray
py-bitstring
py-black
py-bleach
py-blessed	new package/py-blessed (#11656)	2019-06-22 17:05:03 -05:00
py-blessings
py-bokeh
py-boltons
py-boto3
py-botocore
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cachetools	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-cairocffi	Add py-cairocffi package (#12161)	2019-07-30 17:13:02 -05:00
py-cartopy	py-cartopy does not yet support PROJ.6 (#11765)	2019-06-17 21:35:14 -04:00
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cf-units	py-cf-units: new package (#11891)	2019-07-03 19:20:34 -04:00
py-cffi
py-cftime
py-chardet
py-checkm-genome
py-cheetah
py-click
py-click-plugins
py-cligj
py-cloudpickle
py-cogent
py-colorama
py-colorlog	new package: py-colorlog (#12265)	2019-08-03 18:36:29 -05:00
py-colormath
py-colorpy	new package: py-colorpy (#12266)	2019-08-03 18:36:17 -05:00
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crossmap
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython
py-dask
py-dbf
py-decorator
py-deeptools
py-dendropy
py-descartes
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-earthengine-api	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-exodus	new package: py-exodus (#12291)	2019-08-06 23:11:56 -05:00
py-fastaindex
py-fasteners
py-faststructure
py-filelock
py-fiona
py-fiscalyear
py-flake8	Add flake8 3.7.8 (#12141)	2019-07-26 12:11:07 -05:00
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye	py-flye: change to build ARM. (#12176)	2019-08-02 19:15:49 -05:00
py-fn
py-fparser
py-freezegun
py-funcsigs
py-functools32
py-future
py-futures
py-fypp
py-gdbgui
py-genders
py-genshi
py-geopandas
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-google-api-python-client	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-google-auth	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-google-auth-httplib2	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-gpaw
py-graphviz
py-greenlet
py-griddataformats
py-guidata	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-guiqwt
py-h5glance
py-h5py
py-hdfs
py-hepdata-validator
py-hpccm
py-html2text
py-html5lib
py-htseq
py-httpbin
py-httplib2	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
py-importlib
py-invoke
py-ipaddress
py-ipdb
py-ipykernel
py-ipython	Fix some Mac constraint checks (#12138)	2019-07-29 15:05:02 -07:00
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-jmespath
py-joblib
py-jprops
py-jpype
py-jsonpatch	New packages: nrm and libnrm (#11777)	2019-06-20 19:21:44 -07:00
py-jsonpointer	New packages: nrm and libnrm (#11777)	2019-06-20 19:21:44 -07:00
py-jsonschema	Add py-jsonschema 2.6.0 (#12009)	2019-07-13 09:05:17 -05:00
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-jupyterhub
py-keras
py-keras-applications
py-keras-preprocessing
py-kiwisolver
py-kmodes
py-lark-parser	Added latest version, 0.7.1 (#11927)	2019-07-04 10:26:59 -04:00
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble	Update libensemble (#11990)	2019-07-12 10:36:44 -05:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-luigi
py-lxml
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-markdown	py-markdown package: update dependency version range (#11908)	2019-07-01 17:52:41 -07:00
py-markupsafe
py-matplotlib	Fix py-matplotlib build (#12230) (#12234)	2019-08-01 17:58:06 -05:00
py-mccabe
py-mdanalysis
py-meep	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
py-memory-profiler
py-merlin
py-metasv
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mlxtend	py-mlxtend: new package at 0.16.0 (#12039)	2019-07-18 12:25:41 -05:00
py-mo-pack	New packages: libmo-unpack and py-mo-pack (#11895)	2019-07-01 18:24:45 -07:00
py-mock
py-modred
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py	py-mpi4py: Added build argument for mpicc path (#12191)	2019-08-02 19:09:37 -05:00
py-mpmath
py-multiprocess
py-multiqc
py-munch
py-mx
py-mxnet
py-myhdl
py-mysql-connector
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-nc-time-axis	New package: py-nc-time-axis (#11898)	2019-07-01 18:07:57 -07:00
py-neo
py-nestle
py-netcdf4	py-netcdf4: depend on hdf5+hl (#11893)	2019-07-01 15:38:35 +02:00
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr	Update numexpr dependency version (#12168)	2019-07-30 17:15:38 -05:00
py-numexpr3
py-numpy	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
py-numpydoc
py-olefile
py-onnx
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-ordereddict
py-oset
py-owslib
py-packaging
py-palettable
py-pandas	Add pandas 0.25.0 (#12173)	2019-07-30 17:16:32 -05:00
py-paramiko
py-partd
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pauvre
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow
py-pint
py-pip
py-pipits	Add py-pipits 2.4 (#12074)	2019-07-30 17:10:57 -05:00
py-pispino	Add py-pipits 2.4 (#12074)	2019-07-30 17:10:57 -05:00
py-pkgconfig
py-plotly
py-pluggy
py-ply
py-pmw
py-poster
py-pox
py-ppft
py-prettytable
py-progress
py-progressbar2
py-projectq
py-prometheus-client
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyarrow
py-pyasn1	Add py-pyasn1 0.4.6 (#12251)	2019-08-02 20:09:15 -05:00
py-pyasn1-modules	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-pybedtools
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pydv
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject	glib: fix glib dependency build fixes #9992 (#12153)	2019-08-02 15:18:04 -05:00
py-pygpu
py-pygresql
py-pygtk
py-pyke	py-pyke: new package (#11894)	2019-07-02 15:58:14 -04:00
py-pylint
py-pymatgen
py-pyminifier
py-pymol	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc
py-pyomo	py-pyomo: new package at 5.6.6 (#12134)	2019-07-26 10:38:25 -05:00
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyproj
py-pyqi
py-pyqt4	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-pyqt5	py-pyqt5: add missing py-enum34 dependency (#12224)	2019-08-01 13:30:35 +02:00
py-pyrad
py-pyrosar
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysocks
py-pyspark
py-pysqlite
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-isort	New package: py-pytest-isort (#12160)	2019-07-29 14:02:06 -07:00
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-dateutil	py-python-dateutil: Version 2.7.0 acquired dependency on setuptools-scm (#11795)	2019-06-20 09:18:04 -05:00
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-levenshtein
py-python-socketio
py-python-utils
py-pythonqwt	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-pytz
py-pyugrid	py-pyugrid: unstructured grids in netcdf files (#11900)	2019-07-02 15:56:18 -04:00
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-quantities
py-quast
py-queryablelist
py-radical-utils
py-ranger
py-rasterio	Add py-rasterio 1.0.24 (#11738)	2019-06-18 15:14:27 -04:00
py-readme-renderer
py-regex
py-reportlab	Set ignore files for py-reportlab (#11928)	2019-07-03 19:15:01 -07:00
py-requests
py-requests-futures	new package: py-requests-futures (#12264)	2019-08-03 18:36:42 -05:00
py-requests-toolbelt
py-restview
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-s3transfer
py-saga-python
py-scandir
py-scientificpython
py-scikit-image	py-scikit-image: include more dependencies (#11912)	2019-07-04 10:38:02 -04:00
py-scikit-learn	Add master version to sklearn (#12057)	2019-07-18 15:56:48 -05:00
py-scikit-optimize
py-scipy	py-scipy package: add version 1.3.0 (#12171)	2019-07-29 11:57:59 -07:00
py-scoop
py-seaborn
py-send2trash
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy	Rename py-pytables -> py-tables (#11847)	2019-06-25 21:32:49 -04:00
py-sh
py-shapely	Add py-shapely 1.6.4.post2 (#11739)	2019-06-18 14:24:56 -04:00
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spatialist
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxautomodapi
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-stratify	py-stratify: vertical interpolation/stratification of atmos/ocean data (#11911)	2019-07-04 10:38:48 -04:00
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tables	Add tables 3.5.2 (#12172)	2019-07-30 17:16:15 -05:00
py-tabulate
py-tappy
py-tblib
py-terminado
py-testinfra
py-tetoolkit
py-texttable
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-torch	PyTorch package: add version 1.1.0 (#12174)	2019-07-29 11:39:05 -07:00
py-torchvision	New package: py-torchvision (#12175)	2019-07-29 11:42:08 -07:00
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-treehash
py-tuiview	Add SIPPackage base class (#12157)	2019-07-30 17:12:48 -05:00
py-twisted
py-typesentry
py-typing
py-typing-extensions
py-tzlocal
py-udunits
py-umi-tools
py-unicycler
py-unittest2
py-unittest2py3k
py-uritemplate	Move new packages from tutorial to builtin (#12289)	2019-08-05 19:55:39 -05:00
py-urllib3
py-urwid
py-usgs	new package: py-usgs (#12263)	2019-08-03 18:36:55 -05:00
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-warlock	New packages: nrm and libnrm (#11777)	2019-06-20 19:21:44 -07:00
py-wcsaxes
py-wcwidth
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel
py-widgetsnbextension
py-wrapt
py-wxpython	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
py-xarray
py-xattr
py-xdot
py-xenv
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt
py-zmq
py-zope-event
py-zope-interface
pythia6
python	Fix QT4 build for mac (#10944)	2019-08-01 10:22:35 -07:00
qbank
qbox
qca
qhull
qjson
qmcpack	QMCPACK Update July 2019 (#12097)	2019-07-24 12:28:35 -05:00
qmd-progress
qorts
qrupdate
qt	Fix QT4 build for mac (#10944)	2019-08-01 10:22:35 -07:00
qt-creator
qtgraph
qthreads	qthreads package: make hwloc dependency optional and add version 1.14 (#11780)	2019-06-28 11:43:06 -07:00
quantum-espresso	Quantum Espresso package: Specify F90 compiler (#12119)	2019-07-29 15:53:39 -07:00
quinoa
qwt
r	r: set FPICFLAGS for compilers except 'gcc' (#12033)	2019-07-16 11:56:34 -05:00
r3d	r3d: add version 2018-01-07 (#11770)	2019-06-18 09:36:49 -05:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm
r-bbmisc
r-beanplot
r-bfast
r-bfastspatial
r-bglr
r-bh
r-biasedurn
r-bibtex
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics	r-biocgenerics: add 0.30.0 (#11935)	2019-07-08 11:59:54 -07:00
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-cairo
r-callr
r-car
r-caret
r-caroline
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-combinat
r-commonmark
r-complexheatmap
r-compositions
r-construct
r-convevol
r-corhmm
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-crul
r-ctc
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-desc
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-dynamictreecut
r-e1071
r-edger
r-ellipse
r-emmli
r-energy
r-ensembldb
r-ergm
r-evaluate
r-expint
r-expm
r-factoextra
r-factominer
r-fansi
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gamlss
r-gamlss-data
r-gamlss-dist
r-gbm
r-gcrma
r-gdalutils
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-geneplotter
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa
r-geomorph
r-geonames
r-geoquery
r-geor
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gplots
r-graph	r-graph: update R constraint to reflect DESCRIPTION (#11934)	2019-07-08 12:01:17 -07:00
r-grbase	New package: r-grbase (starting at 1.8-3.4) (#11937)	2019-07-08 12:01:58 -07:00
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-gwmodel	New package: r-gwmodel (starting at 2.0-9) (#11887)	2019-07-01 18:14:29 -07:00
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-hoardr
r-htmltable
r-htmltools
r-htmlwidgets
r-httpcode
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-intervals	r-intervals: new package at 0.15.1 (#11884)	2019-06-28 19:42:55 -04:00
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-isdparser
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-loo
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nleqslv
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-nortest
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-optparse
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-phylostratr
r-phytools
r-picante
r-pillar
r-pkgbuild
r-pkgconfig
r-pkgload
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-popgenome
r-popvar
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-psych
r-ptw
r-purrr
r-qtl
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomfields
r-randomfieldsutils
r-randomforest
r-randomglm
r-ranger
r-rappdirs
r-raster
r-rbgl	r-rbgl: add 1.60.0 (#11936)	2019-07-08 12:00:16 -07:00
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal	r-rgdal does not yet support PROJ.6 (#11766)	2019-06-17 23:47:52 -04:00
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhmmer
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-rnoaa
r-robust
r-robustbase
r-rocr
r-rodbc
r-rots
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrblup
r-rrcov
r-rrpp
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstantools
r-rstudioapi
r-rtracklayer
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf	r-sf may not support PROJ.6 (#11767)	2019-06-23 11:35:33 -05:00
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-spacetime	r-spacetime: new package at 1.2-2 (#11885)	2019-07-01 13:39:15 -04:00
r-sparsem
r-spatial
r-spatialreg	New package: r-spatialreg (starting at 1.1-3) (#11886)	2019-07-01 18:13:06 -07:00
r-spdata	New package: r-spdata (starting at version 0.3.0) (#11883)	2019-07-01 18:11:16 -07:00
r-spdep
r-speedglm
r-spem
r-splancs
r-splitstackshape
r-sqldf
r-squash
r-sseq
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-taxizedb
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
r-tigris
r-timedate
r-tmixclust
r-topgo
r-triebeard
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-urltools
r-utf8
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vfs
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-webshot
r-wgcna
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
range-v3	Resolves #11487. (#12136)	2019-08-02 19:19:39 -05:00
rankstr
rapidjson	rapidjson: Don't add -march=native on ARM and gcc 5.x or before. (#12117)	2019-07-24 12:30:32 -05:00
ravel
raxml	raxml: compile n non-x86 hosts. (#12208)	2019-08-02 19:04:25 -05:00
ray
rclone	Ensure proper gopath set for rclone (#11755)	2019-06-18 10:49:07 -07:00
rdma-core
rdp-classifier
rdptools	Add py-pipits 2.4 (#12074)	2019-07-30 17:10:57 -05:00
re2c
readfq
readline
recon
recordproto
redis
redset
redundans
regcm
relax
relion	added relion 3.0.7 - removed deprecated versions (#12101)	2019-07-23 18:13:00 -05:00
rempi
rename
rendercheck
renderproto
repeatmasker	repeatmasker: perl and HMMER dependency fixes (#11660)	2019-06-18 11:11:00 -07:00
repeatmodeler
repeatscout
resourceproto
revbayes
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rngstreams
rocksdb	rocksdb: Don't add -march=native on ARM and gcc 5.x or before. (#12108)	2019-07-23 22:33:05 -05:00
rockstar
rodinia	New package: Rodinia (starting at 3.1) (#11650)	2019-06-24 18:32:46 -07:00
root
rose
ross
routino
rpcsvc-proto
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
saga-gis	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
sailfish
salmon
sambamba
samblaster
samrai	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca	update scalasca to latest version, simplify recipe (#11999)	2019-07-12 10:30:07 -05:00
scallop
scalpel
scan-for-matches
scons	scons: add version 3.1.0 (#12084)	2019-07-22 17:35:40 -05:00
scorec-core
scorep
scotch
scr	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sdsl-lite
seacas
sed
sentieon-genomics
seqan
seqkit	Add py-pipits 2.4 (#12074)	2019-07-30 17:10:57 -05:00
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simgrid
simplemoc
simul
simulationio	SimulationIO package: add version 9.0.1 (#12079)	2019-07-29 15:40:57 -07:00
singularity	Singularity package: add version 3.2.1 (#11833)	2019-06-24 18:20:23 -07:00
singularity-legacy
sirius
skilion-onedrive
sl
slate
sleef
slepc	slepc: update python dependencies to be in sync with petsc (#12250)	2019-08-02 20:07:29 -05:00
slurm
smalt
smof
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox	lame & libmad: Added two new packages for sox mp3 support. (#11964)	2019-07-25 10:40:50 -05:00
spades
span-lite
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
spm
spot
sqlite
sqlitebrowser
squashfs
squid
sra-toolkit
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stata
stc
steps
stow
strace
stream
strelka
stress
string-view-lite
stringtie
structure
strumpack
sublime-text
subread	subread: add 1.6.4 (#11800)	2019-06-20 13:54:20 -05:00
subversion
suite-sparse
sumaclust
sundials	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
superlu
superlu-dist
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swiftsim
swig	swig: add latest version, 4.0.0 (#12243)	2019-08-02 20:08:26 -05:00
symengine
sympol
sz
tabix
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian
tassel
tau	Fixed arch setting variants. Activate cray arch automatically. (#11203)	2019-08-02 15:14:43 -05:00
tcl
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh	tcsh: change the download url, add version 6.21.00 (#11836)	2019-06-27 12:53:43 -04:00
tealeaf	tealeaf: Don't add -march=native on ARM and gcc 5.x or before. (#12080)	2019-07-22 13:03:43 -05:00
templight
templight-tools
tetgen
tethex
texinfo
texlive
tfel
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
tig
time
tinyxml
tinyxml2
tioga
tix
tk	Add variants for tk package (#11956)	2019-07-11 22:21:17 -05:00
tldd
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos	Generalize STK package settings in Trilinos (#11917)	2019-08-07 16:11:15 -05:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore
trimmomatic
trinity
trinotate
trnascan-se
turbine	turbine: Better auto-detection of R location (#11711)	2019-07-03 11:24:20 -07:00
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx	Add UCX 1.6.0 (#12089)	2019-07-22 21:43:35 -05:00
udunits2
ufo-core
ufo-filters
umap	new package: umap (#12000)	2019-07-12 15:26:24 -05:00
umpire
unblur
uncrustify
unibilium
unifycr
unison
units
unittest-cpp
unixodbc
unuran
unzip	unzip: fix build for cray back-end	2019-07-31 20:44:40 -07:00
usearch
util-linux
util-macros
uuid
uvw
valgrind	valgrind: added version 3.15.0 (#12239)	2019-08-02 15:10:37 +02:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt	vdt: add simd variant (#12188)	2019-08-02 19:10:39 -05:00
vecgeom
veclibfort	Overhaul numpy package (#12170)	2019-08-06 18:20:23 -05:00
vegas2
veloc
velvet	velvet: remove -m64 on aarch64. (#11984)	2019-07-11 21:59:24 -05:00
verilator
verrou
videoproto
viennarna
viewres
vigra	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
vim
virtualgl	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk	Change dependencies to use virtual jpeg package (#12179)	2019-07-29 12:08:55 -05:00
vtkh
vtkm
wannier90
warpx	Resources: use expanded archive name by default (#11688)	2019-06-20 11:09:31 -07:00
wcslib
wget
wgsim
windowswmproto
wireshark
wordnet
workrave
wt
wtdbg2
wxpropgrid	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
wxwidgets	Add py-wxpython package (#12163)	2019-07-30 17:13:32 -05:00
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd	xfd package: use Spack-installed libintl (#11545)	2019-06-19 10:54:50 -07:00
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsd
xsdk	xsdk: phist has a conflict with gcc version <= gcc-4.9.1 (#11946)	2019-07-25 14:01:00 -05:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd	xtensor package: add version 0.20.7 and update dependencies (#11574)	2019-06-18 17:05:47 -07:00
xsm
xstdcmap
xtensor	xtensor package: add version 0.20.7 and update dependencies (#11574)	2019-06-18 17:05:47 -07:00
xtensor-python	xtensor package: add version 0.20.7 and update dependencies (#11574)	2019-06-18 17:05:47 -07:00
xterm
xtl	xtensor package: add version 0.20.7 and update dependencies (#11574)	2019-06-18 17:05:47 -07:00
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp	Make yaml-cpp build with libc++ (#10504)	2019-06-26 14:29:09 -07:00
yara
yasm
yorick
z3
zeromq	zeromq package: choose URL based on version; add versions (#12149)	2019-07-29 14:36:33 -07:00
zfp	packages: computation.llnl.gov is now computing.llnl.gov (#12013)	2019-07-15 07:32:51 -07:00
zip
zlib
zoltan	zoltan: use autotools for new architecture host (#11924)	2019-07-08 16:57:17 -07:00
zsh
zstd