27 lines
986 B
Python
27 lines
986 B
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyCmseq(PythonPackage):
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"""CMSeq is a set of commands to provide an interface
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to .bam files for coverage and sequence consensus."""
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homepage = "https://github.com/SegataLab/cmseq"
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pypi = "CMSeq/CMSeq-1.0.4.tar.gz"
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version("1.0.4", sha256="93038a6dba826e29a66df3ec8ab2b3e3872acac7af9df245e4a5a624584aca5c")
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depends_on("py-numpy", type=("build", "run"))
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depends_on("py-scipy", type=("build", "run"))
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depends_on("py-bcbio-gff", type=("build", "run"))
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depends_on("samtools@1.2:", type=("build", "run"))
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depends_on("py-pysam", type=("build", "run"))
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depends_on("py-pandas", type=("build", "run"))
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depends_on("py-biopython@:1.76", type=("build", "run"))
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depends_on("py-setuptools@:57", type=("build"))
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