34 lines
1.6 KiB
Python
34 lines
1.6 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RAcme(RPackage):
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"""Algorithms for Calculating Microarray Enrichment (ACME).
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ACME (Algorithms for Calculating Microarray Enrichment) is a set of
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tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or
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other experiments that result in regions of the genome showing
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"enrichment". It does not rely on a specific array technology (although
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the array should be a "tiling" array), is very general (can be applied
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in experiments resulting in regions of enrichment), and is very
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insensitive to array noise or normalization methods. It is also very
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fast and can be applied on whole-genome tiling array experiments quite
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easily with enough memory."""
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homepage = "https://bioconductor.org/packages/ACME"
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git = "https://git.bioconductor.org/packages/ACME.git"
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version('2.40.0', commit='38499e512998d54d874a0bfdc173f4ba5de5f01a')
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version('2.38.0', commit='cd03196428e8adf62e84f25c4d4545429e2c908b')
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version('2.36.0', commit='39e056435b9775d35e7f7fc5446c2c3cafe15670')
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version('2.34.0', commit='1f53d43e420e245423fdf2711d0dcb345f829469')
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version('2.32.0', commit='76372255d7714a0c8128a11c028bf70214dac407')
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depends_on('r@2.10:', type=('build', 'run'))
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depends_on('r-biobase@2.5.5:', type=('build', 'run'))
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depends_on('r-biocgenerics', type=('build', 'run'))
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