46 lines
1.7 KiB
Python
46 lines
1.7 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Viennarna(AutotoolsPackage):
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"""The ViennaRNA Package consists of a C code library and several
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stand-alone programs for the prediction and comparison of RNA secondary
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structures.
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"""
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homepage = "https://www.tbi.univie.ac.at/RNA/"
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url = "https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ViennaRNA-2.4.3.tar.gz"
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version('2.4.3', sha256='4cda6e22029b34bb9f5375181562f69e4a780a89ead50fe952891835e9933ac0')
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version('2.3.5', sha256='26b62a00da21bc5597b580ab8fef4e624234ec446d7d3cb0ce22803a5d7074ca')
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variant('sse', default=True, description='Enable SSE in order to substantially speed up execution')
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variant('perl', default=True, description='Build ViennaRNA with Perl interface')
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variant('python', default=True, description='Build ViennaRNA with Python interface')
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depends_on('perl', type=('build', 'run'))
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depends_on('python', type=('build', 'run'))
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depends_on('libsvm')
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depends_on('gsl')
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def url_for_version(self, version):
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url = 'https://www.tbi.univie.ac.at/RNA/download/sourcecode/{0}_x/ViennaRNA-{1}.tar.gz'
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return url.format(version.up_to(2).underscored, version)
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def configure_args(self):
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args = self.enable_or_disable('sse')
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args += self.with_or_without('python')
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args += self.with_or_without('perl')
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if self.spec.satisfies('@2.4.3:'):
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args.append('--without-swig')
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if 'python@3:' in self.spec:
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args.append('--with-python3')
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return args
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