1113705080
some of these are not resolvable in that there is only an http page available, or a page reported as broken is actually ok, or a page has an SSL error that does not prevent one from visiting (and no good replacement) Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
34 lines
1.2 KiB
Python
34 lines
1.2 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Mira(AutotoolsPackage):
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"""MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome
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and EST/RNASeq projects."""
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homepage = "https://sourceforge.net/projects/mira-assembler/"
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url = "https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira-4.0.2.tar.bz2"
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version('4.0.2', sha256='a32cb2b21e0968a5536446287c895fe9e03d11d78957554e355c1080b7b92a80')
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depends_on('boost@1.46:')
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depends_on('expat@2.0.1:')
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depends_on('gperftools')
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conflicts('%gcc@6:', when='@:4.0.2')
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def patch(self):
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with working_dir(join_path('src', 'progs')):
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edit = FileFilter('quirks.C')
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edit.filter('#include <boost/filesystem.hpp>',
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'#include <boost/filesystem.hpp>\n#include <iostream>')
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def configure_args(self):
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args = ['--with-boost=%s' % self.spec['boost'].prefix,
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'--with-expat=%s' % self.spec['expat'].prefix]
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return args
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