a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
32 lines
1.2 KiB
Python
32 lines
1.2 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Fasttree(Package):
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"""FastTree infers approximately-maximum-likelihood phylogenetic
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trees from alignments of nucleotide or protein sequences.
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FastTree can handle alignments with up to a million of sequences
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in a reasonable amount of time and memory."""
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homepage = "http://www.microbesonline.org/fasttree"
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url = "http://www.microbesonline.org/fasttree/FastTree-2.1.10.c"
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version('2.1.10', sha256='54cb89fc1728a974a59eae7a7ee6309cdd3cddda9a4c55b700a71219fc6e926d', expand=False, url='http://www.microbesonline.org/fasttree/FastTree-2.1.10.c')
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phases = ['build', 'install']
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def build(self, spec, prefix):
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cc = Executable(spack_cc)
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cc('-O3', self.compiler.openmp_flag,
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'-DOPENMP', '-finline-functions', '-funroll-loops', '-Wall',
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'-oFastTreeMP', 'FastTree-' + format(spec.version.dotted) + '.c',
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'-lm')
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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install('FastTreeMP', prefix.bin)
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