125206d44d
This commit adds a layer of indirection to improve build isolation with
and without external Python, as well as usability of environment views.
It adds `python-venv` as a dependency to all packages that `extends("python")`,
which has the following advantages:
1. Build isolation: only `PYTHONPATH` is considered in builds, not
user / system packages
2. Stable install layout: fixes the problem on Debian, RHEL and Fedora where
external / system python produces `bin/local` subdirs in Spack install prefixes.
3. Environment views are Python virtual environments (and if you add
`py-pip` things like `pip list` work)
Views work whether they're symlink, hardlink or copy type.
This commit additionally makes `spec["python"].command` return
`spec["python-venv"].command`. The rationale is that packages in repos we do
not own do not pass the underlying python to the build system, which could still
result in incorrectly computed install layouts.
Other attributes like `libs`, `headers` should be on `python` anyways and need no change.
197 lines
8.8 KiB
Python
197 lines
8.8 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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from spack.pkg.builtin.boost import Boost
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class Fenics(CMakePackage):
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"""FEniCS is organized as a collection of interoperable components
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that together form the FEniCS Project. These components include
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the problem-solving environment DOLFIN, the form compiler FFC, the
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finite element tabulator FIAT, the just-in-time compiler Instant / Dijitso,
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the code generation interface UFC, the form language UFL and a range of
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additional components."""
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homepage = "https://fenicsproject.org/"
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git = "https://bitbucket.org/fenics-project/dolfin.git"
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url = "https://bitbucket.org/fenics-project/dolfin/downloads/dolfin-2019.1.0.post0.tar.gz"
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maintainers("chrisrichardson", "garth-wells", "jhale")
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license("LGPL-3.0-only")
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version("master", branch="master")
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version(
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"2019.1.0.post0", sha256="61abdcdb13684ba2a3ba4afb7ea6c7907aa0896a46439d3af7e8848483d4392f"
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)
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version(
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"2018.1.0.post1", sha256="425cc49b90e0f5c2ebdd765ba9934b1ada97e2ac2710d982d6d267a5e2c5982d"
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)
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# Pre 2018.1.0 versions are deprecated due to expected compatibility issues
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version(
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"2017.2.0.post0",
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sha256="d3c40cd8c1c882f517999c25ea4220adcd01dbb1d829406fce99b1fc40184c82",
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deprecated=True,
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)
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version(
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"2016.2.0",
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sha256="c6760996660a476f77889e11e4a0bc117cc774be0eec777b02a7f01d9ce7f43d",
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deprecated=True,
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)
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dolfin_versions = ["2019.1.0", "2018.1.0", "2017.2.0", "2016.2.0"]
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variant("python", default=True, description="Compile with Python interface")
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variant("hdf5", default=True, description="Compile with HDF5")
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variant("parmetis", default=True, description="Compile with ParMETIS")
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variant("scotch", default=True, description="Compile with Scotch")
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variant("petsc", default=True, description="Compile with PETSc")
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variant("slepc", default=True, description="Compile with SLEPc")
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variant("petsc4py", default=True, description="Use PETSC4py")
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variant("slepc4py", default=True, description="Use SLEPc4py")
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variant("trilinos", default=False, description="Compile with Trilinos")
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variant("suite-sparse", default=True, description="Compile with SuiteSparse solvers")
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variant("vtk", default=False, description="Compile with VTK")
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variant("qt", default=False, description="Compile with QT")
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variant("zlib", default=False, description="Compile with ZLIB")
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variant("mpi", default=True, description="Enables the distributed memory support")
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variant("openmp", default=True, description="Enables the shared memory support")
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variant("shared", default=True, description="Enables the build of shared libraries")
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variant("doc", default=False, description="Builds the documentation")
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variant(
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"build_type",
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default="RelWithDebInfo",
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description="The build type to build",
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values=("Debug", "Release", "RelWithDebInfo", "MinSizeRel", "Developer"),
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)
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# Conflics for PETSC4PY / SLEPC4PY
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conflicts("+petsc4py", when="~python")
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conflicts("+petsc4py", when="~petsc")
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conflicts("+slepc4py", when="~python")
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conflicts("+slepc4py", when="~slepc")
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# Patches
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# patch('petsc-3.7.patch', when='petsc@3.7:')
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patch("header_fix.patch", when="@2019.1.0.post0")
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# endian.hpp for byte order detection was removed with Boost 1.73,
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# use __BYTE_ORDER__ instead
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patch(
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"https://bitbucket.org/fenics-project/dolfin/issues/attachments/1116/fenics-project/dolfin/1602778118.04/1116/0001-Use-__BYTE_ORDER__-instead-of-removed-Boost-endian.h.patch",
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sha256="1cc69e612df18feb5ebdc78cd902cfefda5ffc077735f0b67a1dcb1bf82e63c9",
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when="@2019.1.0.post0",
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)
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patch("petsc_3_11.patch", when="@2018.1.0.post1")
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# enable extension support for fenics package
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extends("python", when="+python")
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# fenics python package dependencies
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for ver in dolfin_versions:
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wver = "@" + ver
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depends_on("py-fenics-fiat{0}".format(wver), type=("build", "run"), when=wver + "+python")
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if Version(ver) < Version("2018.1.0"):
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depends_on(
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"py-fenics-instant{0}".format(wver), type=("build", "run"), when=wver + "+python"
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)
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else:
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depends_on(
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"py-fenics-dijitso{0}".format(wver), type=("build", "run"), when=wver + "+python"
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)
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depends_on("py-fenics-ufl{0}".format(wver), type=("build", "run"), when=wver + "+python")
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if ver in ["2019.1.0", "2017.2.0"]:
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wver = "@" + ver + ".post0"
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depends_on("py-fenics-ffc{0}".format(wver), type=("build", "run"), when=wver + "+python")
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# Adding special case for master
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depends_on("py-fenics-fiat@2019.1.0", type=("build", "run"), when="@master+python")
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depends_on("py-fenics-dijitso@master", type=("build", "run"), when="@master+python")
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depends_on("py-fenics-ufl-legacy@main", type=("build", "run"), when="@master+python")
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depends_on("py-fenics-ffc@master", type=("build", "run"), when="@master+python")
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# package dependencies
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depends_on("python@3.5:", type=("build", "run"), when="+python")
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depends_on("eigen@3.2.0:")
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depends_on("pkgconfig", type="build")
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depends_on("zlib-api", when="+zlib")
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depends_on("boost+filesystem+program_options+system+iostreams+timer+regex+chrono")
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depends_on(
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"boost+filesystem+program_options+system+iostreams+timer+regex+chrono@1.68.0",
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when="@:2018",
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)
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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depends_on("mpi", when="+mpi")
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depends_on("hdf5@:1.10+hl+fortran", when="+hdf5+petsc")
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depends_on("hdf5@:1.10+hl", when="+hdf5~petsc")
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depends_on("metis+real64", when="+parmetis")
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depends_on("parmetis", when="+parmetis")
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depends_on("scotch~metis", when="+scotch~mpi")
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depends_on("scotch+mpi~metis", when="+scotch+mpi")
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depends_on("petsc", when="+petsc")
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depends_on("slepc", when="+slepc")
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depends_on("py-petsc4py@3.6:", when="+petsc+python")
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depends_on("trilinos", when="+trilinos")
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depends_on("vtk", when="+vtk")
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depends_on("suite-sparse", when="+suite-sparse")
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depends_on("qt", when="+qt")
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depends_on("py-pybind11@2.2.4", type=("build", "run"))
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depends_on("cmake@3.17.3:", type="build")
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depends_on("py-pip", when="+python", type="build")
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depends_on("py-wheel", when="+python", type="build")
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depends_on("py-setuptools", type="build", when="+python")
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depends_on("py-pkgconfig", type=("build", "run"), when="+python")
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depends_on("py-sphinx@1.0.1:", when="+doc", type="build")
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def cmake_args(self):
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return [
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self.define_from_variant("BUILD_SHARED_LIBS", "shared"),
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self.define("DOLFIN_SKIP_BUILD_TESTS", True),
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self.define_from_variant("DOLFIN_ENABLE_OPENMP", "openmp"),
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self.define_from_variant("DOLFIN_ENABLE_CHOLMOD", "suite-sparse"),
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self.define_from_variant("DOLFIN_ENABLE_HDF5", "hdf5"),
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self.define_from_variant("HDF5_NO_FIND_PACKAGE_CONFIG_FILE", "hdf5"),
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self.define_from_variant("DOLFIN_ENABLE_MPI", "mpi"),
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self.define_from_variant("DOLFIN_ENABLE_PARMETIS", "parmetis"),
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self.define_from_variant("DOLFIN_ENABLE_PETSC", "petsc"),
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self.define_from_variant("DOLFIN_ENABLE_PETSC4PY", "petsc4py"),
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self.define_from_variant("DOLFIN_ENABLE_PYTHON", "python"),
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self.define_from_variant("DOLFIN_ENABLE_QT", "qt"),
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self.define_from_variant("DOLFIN_ENABLE_SCOTCH", "scotch"),
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self.define_from_variant("DOLFIN_ENABLE_SLEPC", "slepc"),
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self.define_from_variant("DOLFIN_ENABLE_SLEPC4PY", "slepc4py"),
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self.define_from_variant("DOLFIN_ENABLE_DOCS", "doc"),
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self.define_from_variant("DOLFIN_ENABLE_SPHINX", "doc"),
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self.define_from_variant("DOLFIN_ENABLE_TRILINOS", "trilinos"),
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self.define_from_variant("DOLFIN_ENABLE_UMFPACK", "suite-sparse"),
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self.define_from_variant("DOLFIN_ENABLE_VTK", "vtk"),
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self.define_from_variant("DOLFIN_ENABLE_ZLIB", "zlib"),
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]
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# set environment for bulding python interface
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def setup_build_environment(self, env):
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env.set("DOLFIN_DIR", self.prefix)
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def setup_run_environment(self, env):
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env.set("DOLFIN_DIR", self.prefix)
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# build python interface of dolfin
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@run_after("install")
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def install_python_interface(self):
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if "+python" in self.spec:
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with working_dir("python"):
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args = std_pip_args + ["--prefix=" + self.prefix, "."]
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pip(*args)
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