12fb1cdbe5
Several packages specified pkg-config as a dependency, which is a specific implementation of the pkgconfig virtual. Most packages do not request a specific implementation. The current concretizer may choose a different implentation of pkgconfig for the nonspecific dependents, which conflicts with the request for pkg-config. This replaces all requests for a specific implementation of pkgconfig with the virtual package as a temporary solution to the issue.
50 lines
2.1 KiB
Python
50 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Pandaseq(AutotoolsPackage):
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"""PANDASEQ is a program to align Illumina reads, optionally with PCR
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primers embedded in the sequence, and reconstruct an overlapping
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sequence."""
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homepage = "https://github.com/neufeld/pandaseq"
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url = "https://github.com/neufeld/pandaseq/archive/v2.11.tar.gz"
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version('2.11', 'a8ae0e938bac592fc07dfa668147d80b')
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version('2.10', '5b5b04c9b693a999f10a9c9bd643f068')
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depends_on('autoconf', type='build')
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depends_on('automake', type='build')
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depends_on('libtool', type=('build', 'link'))
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depends_on('m4', type='build')
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depends_on('zlib', type='build')
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depends_on('pkgconfig', type='build')
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depends_on('bzip2', type='link')
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def autoreconf(self, spec, prefix):
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bash = which('bash')
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bash('./autogen.sh')
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