51 lines
2.1 KiB
Python
51 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Tabix(MakefilePackage):
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"""Generic indexer for TAB-delimited genome position files"""
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homepage = "https://github.com/samtools/tabix"
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git = "https://github.com/samtools/tabix.git"
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version('2013-12-16', commit='1ae158ac79b459f5feeed7490c67519b14ce9f35')
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depends_on('perl', type=('build', 'run'))
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depends_on('python', type=('build', 'run'))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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mkdirp(prefix.share.man.man1)
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install('tabix', prefix.bin)
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install('bgzip', prefix.bin)
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install('tabix.py', prefix.bin)
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install('tabix.1', prefix.share.man.man1)
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install('tabix.tex', prefix.share)
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install('TabixReader.java', prefix.bin)
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install('libtabix.a', prefix.lib)
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install_tree('perl', prefix.perl)
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install_tree('python', prefix.python)
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