51 lines
2.1 KiB
Python
51 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Xhmm(MakefilePackage):
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"""The XHMM C++ software suite was written to
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call copy number variation (CNV) from next-generation
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sequencing projects, where exome capture was used
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(or targeted sequencing, more generally)."""
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homepage = "http://atgu.mgh.harvard.edu/xhmm/index.shtml"
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git = "https://bitbucket.org/statgen/xhmm.git"
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version('20160104', commit='cc14e528d90932f059ac4fe94e869e81221fd732')
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depends_on('lapack')
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def edit(self, spec, prefix):
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filter_file('GCC', 'CC', 'sources/hmm++/config_rules.Makefile')
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filter_file('GCC =gcc', '', 'sources/hmm++/config_defs.Makefile')
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def build(self, spec, prefix):
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make('LAPACK_LIBS=%s' % ''.join(spec['lapack'].libs.names))
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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install('xhmm', prefix.bin)
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