a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
36 lines
1.2 KiB
Python
36 lines
1.2 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Tppred(Package):
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"""TPPRED is a software package for the prediction of mitochondrial
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targeting peptides from protein primary sequence."""
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homepage = "https://tppred2.biocomp.unibo.it/tppred2/default/software"
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url = "http://biocomp.unibo.it/savojard/tppred2.tar.gz"
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version('2.0', sha256='0e180d5ce1f0bccfdbc3dbf9981b3fbe2101c85491c58c58c88856861688a4f5')
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depends_on('python@2.7:2.999', type='run')
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depends_on('py-scikit-learn@0.13.1', type='run')
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depends_on('emboss')
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def url_for_version(self, version):
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url = 'http://biocomp.unibo.it/savojard/tppred{0}.tar.gz'
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return url.format(version.up_to(1))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir('bin'):
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install('tppred2.py', prefix.bin)
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install_tree('data', prefix.data)
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install_tree('example', prefix.example)
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install_tree('tppred2modules', prefix.modules)
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def setup_run_environment(self, env):
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env.set('TPPRED_ROOT', self.prefix)
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