22df37c328
This PR adds the r-pscbs package along with new dependencies and updates. - new package: r-aroma-light - new package: r-r-cache - updated package: r-r-oo
30 lines
1.3 KiB
Python
30 lines
1.3 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RPscbs(RPackage):
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"""Segmentation of allele-specific DNA copy number data and detection of
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regions with abnormal copy number within each parental chromosome. Both
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tumor-normal paired and tumor-only analyses are supported."""
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homepage = "https://github.com/HenrikBengtsson/PSCBS"
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url = "https://cloud.r-project.org/src/contrib/PSCBS_0.65.0.tar.gz"
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list_url = "https://cloud.r-project.org/src/contrib/Archive/PSCBS"
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version('0.65.0', sha256='3365065d5375c599eb024bfff12c5f6b10a6b1a4fe4ba6f200f7e83618dd399a')
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depends_on('r@3.2.0:', type=('build', 'run'))
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depends_on('r-r-methodss3@1.7.1:', type=('build', 'run'))
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depends_on('r-r-oo@1.22.1:', type=('build', 'run'))
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depends_on('r-r-utils@2.8.0:', type=('build', 'run'))
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depends_on('r-r-cache@0.13.0:', type=('build', 'run'))
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depends_on('r-matrixstats@0.54.0:', type=('build', 'run'))
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depends_on('r-aroma-light@2.4.0:', type=('build', 'run'))
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depends_on('r-dnacopy@1.42.0:', type=('build', 'run'))
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depends_on('r-listenv@0.7.0:', type=('build', 'run'))
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depends_on('r-future@1.12.0:', type=('build', 'run'))
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