156af2a60a
Many noqa's in the code are no longer necessary now that the column limit is 99 characters. Others can easily be eliminated, and still more can just be made more specific if they do not have to do with line length. The only E501's still in the code are in the tests for `spack.util.path` and the tests for `spack style`.
616 lines
27 KiB
Python
616 lines
27 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os
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from spack.package import *
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from spack.pkg.builtin.boost import Boost
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class Dealii(CMakePackage, CudaPackage):
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"""C++ software library providing well-documented tools to build finite
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element codes for a broad variety of PDEs."""
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homepage = "https://www.dealii.org"
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url = "https://github.com/dealii/dealii/releases/download/v8.4.1/dealii-8.4.1.tar.gz"
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git = "https://github.com/dealii/dealii.git"
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maintainers = ['jppelteret', 'luca-heltai']
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# Don't add RPATHs to this package for the full build DAG.
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# only add for immediate deps.
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transitive_rpaths = False
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generator = 'Ninja'
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version('master', branch='master')
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version('9.4.0', sha256='238677006cd9173658e5b69cdd1861f800556982db6005a3cc5eb8329cc1e36c')
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version('9.3.3', sha256='5dfb59174b341589e92b434398a1b7cc11ad053ce2315cf673f5efc5ba271a29')
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version('9.3.2', sha256='5341d76bfd75d3402fc6907a875513efb5fe8a8b99af688d94443c492d5713e8')
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version('9.3.1', sha256='a62f4676ab2dc029892251d141427fb75cbb83cddd606019f615d0dde9c61ab8')
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version('9.3.0', sha256='aef8c7a87510ce827dfae3bdd4ed7bff82004dc09f96fa7a65b2554f2839b931')
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version('9.2.0', sha256='d05a82fb40f1f1e24407451814b5a6004e39366a44c81208b1ae9d65f3efa43a')
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version('9.1.1', sha256='fc5b483f7fe58dfeb52d05054011280f115498e337af3e085bf272fd1fd81276')
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version('9.1.0', sha256='5b070112403f8afbb72345c1bb24d2a38d11ce58891217e353aab97957a04600')
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version('9.0.1', sha256='df2f0d666f2224be07e3741c0e8e02132fd67ea4579cd16a2429f7416146ee64')
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version('9.0.0', sha256='c918dc5c1a31d62f6eea7b524dcc81c6d00b3c378d4ed6965a708ab548944f08')
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version('8.5.1', sha256='d33e812c21a51f7e5e3d3e6af86aec343155650b611d61c1891fbc3cabce09ae')
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version('8.5.0', sha256='e6913ff6f184d16bc2598c1ba31f879535b72b6dff043e15aef048043ff1d779')
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version('8.4.2', sha256='ec7c00fadc9d298d1a0d16c08fb26818868410a9622c59ba624096872f3058e4')
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version('8.4.1', sha256='00a0e92d069cdafd216816f1aff460f7dbd48744b0d9e0da193287ebf7d6b3ad')
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version('8.4.0', sha256='36a20e097a03f17b557e11aad1400af8c6252d25f7feca40b611d5fc16d71990')
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version('8.3.0', sha256='4ddf72632eb501e1c814e299f32fc04fd680d6fda9daff58be4209e400e41779')
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version('8.2.1', sha256='d75674e45fe63cd9fa294460fe45228904d51a68f744dbb99cd7b60720f3b2a0')
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version('8.1.0', sha256='d666bbda2a17b41b80221d7029468246f2658051b8c00d9c5907cd6434c4df99')
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# Configuration variants
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variant('build_type', default='DebugRelease',
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description='The build type to build',
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values=('Debug', 'Release', 'DebugRelease'))
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variant('cxxstd', default='default', multi=False,
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description='Compile using the specified C++ standard',
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values=('default', '11', '14', '17'))
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variant('doc', default=False,
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description='Compile with documentation')
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variant('examples', default=True,
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description='Compile tutorial programs')
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variant('int64', default=False,
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description='Compile with 64 bit indices support')
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variant('mpi', default=True,
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description='Compile with MPI')
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variant('optflags', default=False,
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description='Compile using additional optimization flags')
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variant('python', default=False,
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description='Compile with Python bindings')
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# Package variants
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variant('assimp', default=True,
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description='Compile with Assimp')
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variant('arborx', default=True,
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description='Compile with Arborx support')
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variant('arpack', default=True,
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description='Compile with Arpack and PArpack (only with MPI)')
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variant('adol-c', default=True,
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description='Compile with ADOL-C')
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variant('cgal', default=True, when='@9.4:',
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description='Compile with CGAL')
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variant('ginkgo', default=True,
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description='Compile with Ginkgo')
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variant('gmsh', default=True,
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description='Compile with GMSH')
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variant('gsl', default=True,
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description='Compile with GSL')
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variant('hdf5', default=True,
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description='Compile with HDF5 (only with MPI)')
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variant('metis', default=True,
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description='Compile with Metis')
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variant('muparser', default=True,
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description='Compile with muParser')
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variant('nanoflann', default=False,
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description='Compile with Nanoflann')
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variant('netcdf', default=False,
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description='Compile with Netcdf (only with MPI)')
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variant('oce', default=True,
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description='Compile with OCE')
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variant('p4est', default=True,
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description='Compile with P4est (only with MPI)')
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variant('petsc', default=True,
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description='Compile with Petsc (only with MPI)')
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variant('scalapack', default=True,
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description='Compile with ScaLAPACK (only with MPI)')
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variant('sundials', default=True,
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description='Compile with Sundials')
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variant('slepc', default=True,
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description='Compile with Slepc (only with Petsc and MPI)')
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variant('symengine', default=True,
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description='Compile with SymEngine')
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variant('simplex', default=True,
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description='Compile with Simplex support')
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# TODO @9.3: enable by default, when we know what to do
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# variant('taskflow', default=False,
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# description='Compile with multi-threading via Taskflow')
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# TODO @9.3: disable by default
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# (NB: only if tbb is removed in 9.3, as planned!!!)
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variant('threads', default=True,
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description='Compile with multi-threading via TBB')
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variant('trilinos', default=True,
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description='Compile with Trilinos (only with MPI)')
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# Required dependencies: Light version
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depends_on('blas')
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# Boost 1.58 is blacklisted, require at least 1.59, see
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# https://github.com/dealii/dealii/issues/1591
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# There are issues with 1.65.1 and 1.65.0:
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# https://github.com/dealii/dealii/issues/5262
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# we take the patch from https://github.com/boostorg/serialization/pull/79
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# more precisely its variation https://github.com/dealii/dealii/pull/5572#issuecomment-349742019
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# 1.68.0 has issues with serialization https://github.com/dealii/dealii/issues/7074
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# adopt https://github.com/boostorg/serialization/pull/105 as a fix
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depends_on('boost@1.59.0:1.63,1.65.1,1.67.0:+thread+system+serialization+iostreams',
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patches=[patch('boost_1.65.1_singleton.patch',
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level=1,
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when='@1.65.1'),
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patch('boost_1.68.0.patch',
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level=1,
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when='@1.68.0'),
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],
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when='~python')
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depends_on('boost@1.59.0:1.63,1.65.1,1.67.0:+thread+system+serialization+iostreams+python',
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patches=[patch('boost_1.65.1_singleton.patch',
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level=1,
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when='@1.65.1'),
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patch('boost_1.68.0.patch',
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level=1,
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when='@1.68.0'),
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],
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when='+python')
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# boost@1.77.0 triggers build errors in dealii@9.3.1
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depends_on('boost@:1.76', when='@:9.3')
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# The std::auto_ptr is removed in the C++ 17 standard.
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# See https://github.com/dealii/dealii/issues/4662
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# and related topics discussed for other software libraries.
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depends_on('boost cxxstd=11', when='cxxstd=11')
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depends_on('boost cxxstd=14', when='cxxstd=14')
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depends_on('boost cxxstd=17', when='cxxstd=17')
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depends_on('bzip2', when='@:8')
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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depends_on('lapack')
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depends_on('ninja', type='build')
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depends_on('suite-sparse')
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depends_on('zlib')
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# Optional dependencies: Configuration
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depends_on('cuda@8:', when='+cuda')
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depends_on('cmake@3.9:', when='+cuda', type='build')
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# Older version of deal.II do not build with Cmake 3.10, see
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# https://github.com/dealii/dealii/issues/5510
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depends_on('cmake@:3.9', when='@:8', type='build')
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depends_on('mpi', when='+mpi')
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depends_on('python', when='@8.5.0:+python')
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# Optional dependencies: Packages
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depends_on('adol-c@2.6.4:', when='@9.0:+adol-c')
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depends_on('arborx', when='@9.3:+arborx')
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depends_on('arborx+trilinos', when='@9.3:+arborx+trilinos')
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depends_on('arpack-ng+mpi', when='+arpack+mpi')
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depends_on('assimp', when='@9.0:+assimp')
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depends_on('cgal', when='@9.4:+cgal')
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depends_on('doxygen+graphviz', when='+doc')
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depends_on('graphviz', when='+doc')
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depends_on('ginkgo', when='@9.1:+ginkgo')
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depends_on('ginkgo@1.4.0:', when='@9.4:+ginkgo')
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depends_on('gmsh+tetgen+netgen+oce', when='@9.0:+gmsh', type=('build', 'run'))
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depends_on('gsl', when='@8.5.0:+gsl')
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# TODO: next line fixes concretization with petsc
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depends_on('hdf5+mpi+hl+fortran', when='+hdf5+mpi+petsc')
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depends_on('hdf5+mpi+hl', when='+hdf5+mpi~petsc')
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# TODO: concretizer bug. The two lines mimic what comes from PETSc
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# but we should not need it
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depends_on('metis@5:+int64', when='+metis+int64')
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depends_on('metis@5:~int64', when='+metis~int64')
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depends_on('muparser', when='+muparser')
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# Nanoflann support has been removed after 9.2.0
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depends_on('nanoflann', when='@9.0:9.2+nanoflann')
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depends_on('netcdf-c+mpi', when='+netcdf+mpi')
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depends_on('netcdf-cxx', when='+netcdf+mpi')
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depends_on('oce', when='+oce')
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depends_on('p4est', when='+p4est+mpi')
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depends_on('petsc+mpi~int64', when='+petsc+mpi~int64')
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depends_on('petsc+mpi+int64', when='+petsc+mpi+int64')
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depends_on('petsc@:3.6.4', when='@:8.4.1+petsc+mpi')
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depends_on('scalapack', when='@9.0:+scalapack')
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depends_on('slepc', when='+slepc+petsc+mpi')
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depends_on('slepc@:3.6.3', when='@:8.4.1+slepc+petsc+mpi')
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depends_on('slepc~arpack', when='+slepc+petsc+mpi+int64')
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depends_on('sundials@:3~pthread', when='@9.0:9.2+sundials')
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depends_on('sundials@5:5.8', when='@9.3:9.3.3+sundials')
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depends_on('sundials@5:', when='@9.3.4:+sundials')
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# depends_on('taskflow', when='@9.3:+taskflow')
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depends_on('trilinos gotype=int', when='+trilinos@12.18.1:')
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# TODO: next line fixes concretization with trilinos and adol-c
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depends_on('trilinos~exodus', when='@9.0:+adol-c+trilinos')
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# Both Trilinos and SymEngine bundle the Teuchos RCP library.
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# This leads to conflicts between macros defined in the included
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# headers when they are not compiled in the same mode.
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# See https://github.com/symengine/symengine/issues/1516
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# TODO: uncomment when the following is fixed
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# https://github.com/spack/spack/issues/11160
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# depends_on(
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# "symengine@0.4: build_type=Release",
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# when="@9.1:+symengine+trilinos^trilinos~debug"
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# )
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# depends_on(
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# "symengine@0.4: build_type=Debug",
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# when="@9.1:+symengine+trilinos^trilinos+debug"
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# )
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depends_on('symengine@0.4:', when='@9.1:+symengine')
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depends_on('symengine@0.6:', when='@9.2:+symengine')
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depends_on('tbb', when='+threads')
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# do not require +rol to make concretization of xsdk possible
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depends_on('trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado', when='+trilinos')
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depends_on('trilinos~hypre', when='+trilinos+int64')
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# TODO: temporary disable Tpetra when using CUDA due to
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# namespace "Kokkos::Impl" has no member "cuda_abort"
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depends_on('trilinos@master+rol~amesos2~ifpack2~intrepid2~kokkos~tpetra~zoltan2', when='+trilinos+cuda')
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# Explicitly provide a destructor in BlockVector,
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# otherwise deal.II may fail to build with Intel compilers.
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patch('https://github.com/dealii/dealii/commit/a89d90f9993ee9ad39e492af466b3595c06c3e25.patch?full_index=1',
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sha256='72304bc6c3fb4549cf53ed533a00311d12827d48817e2038efd3a8ef6c43d149',
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when='@9.0.1')
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# https://github.com/dealii/dealii/pull/7935
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patch('https://github.com/dealii/dealii/commit/f8de8c5c28c715717bf8a086e94f071e0fe9deab.patch?full_index=1',
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sha256='4aba56b01d816ca950b1625f436840df253f145650e3a3eba51e7f2696ec7dc0',
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when='@9.0.1 ^boost@1.70.0:')
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# Fix TBB version check
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# https://github.com/dealii/dealii/pull/9208
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patch('https://github.com/dealii/dealii/commit/80b13fe5a2eaefc77fa8c9266566fa8a2de91edf.patch?full_index=1',
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sha256='3da530766050a0cea80106684347055bdb78528a1869ce99e8fbf8fc83074fd0',
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when='@9.0.0:9.1.1')
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# Explicitly include a boost header, otherwise deal.II fails to compile
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# https://github.com/dealii/dealii/pull/11438
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patch('https://github.com/dealii/dealii/commit/3b815e21c4bfd82c792ba80e4d90314c8bb9edc9.patch?full_index=1',
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sha256='90ae9ddefe77fffd297bba6b070ab68d07306d4ef525ee994e8c49cef68f76f3',
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when='@9.2.0 ^boost@1.72.0:')
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# Check for sufficiently modern versions
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conflicts('cxxstd=11', when='@9.3:')
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conflicts('cxxstd=14', when='@9.4:+cgal',
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msg='CGAL requires the C++ standard to be set to 17 or later.')
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# Interfaces added in 8.5.0:
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for p in ['gsl', 'python']:
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conflicts('+{0}'.format(p), when='@:8.4.2',
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msg='The interface to {0} is supported from version 8.5.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# Interfaces added in 9.0.0:
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for p in ['assimp', 'gmsh', 'nanoflann', 'scalapack', 'sundials',
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'adol-c']:
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conflicts('+{0}'.format(p), when='@:8.5.1',
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msg='The interface to {0} is supported from version 9.0.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# interfaces added in 9.1.0:
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for p in ['ginkgo', 'symengine']:
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conflicts('+{0}'.format(p), when='@:9.0',
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msg='The interface to {0} is supported from version 9.1.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# interfaces added in 9.3.0:
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for p in ['simplex', 'arborx']: # , 'taskflow']:
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conflicts('+{0}'.format(p), when='@:9.2',
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msg='The interface to {0} is supported from version 9.3.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# Interfaces removed in 9.3.0:
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conflicts('+nanoflann', when='@9.3.0:',
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msg='The interface to Nanoflann was removed from version 9.3.0. '
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'Please explicitly disable this variant via ~nanoflann')
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# Check that the combination of variants makes sense
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# 64-bit BLAS:
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for p in ['openblas', 'intel-mkl', 'intel-parallel-studio+mkl']:
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conflicts('^{0}+ilp64'.format(p), when='@:8.5.1',
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msg='64bit BLAS is only supported from 9.0.0')
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# MPI requirements:
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for p in ['arpack', 'hdf5', 'netcdf', 'p4est', 'petsc', 'scalapack',
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'slepc', 'trilinos']:
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conflicts('+{0}'.format(p), when='~mpi',
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msg='To enable {0} it is necessary to build deal.II with '
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'MPI support enabled.'.format(p))
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# Optional dependencies:
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conflicts('+adol-c', when='^netcdf',
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msg='Symbol clash between the ADOL-C library and '
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'Netcdf.')
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conflicts('+adol-c', when='^trilinos+chaco',
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msg='Symbol clash between the ADOL-C library and '
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'Trilinos SEACAS Chaco.')
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conflicts('+adol-c', when='^trilinos+exodus',
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msg='Symbol clash between the ADOL-C library and '
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'Trilinos Netcdf.')
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conflicts('+slepc', when='~petsc',
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msg='It is not possible to enable slepc interfaces '
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'without petsc.')
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def cmake_args(self):
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spec = self.spec
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options = []
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# Release flags
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cxx_flags_release = []
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# Debug and release flags
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cxx_flags = []
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# Set directory structure:
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if spec.satisfies('@:8.2.1'):
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options.append(
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self.define('DEAL_II_COMPONENT_COMPAT_FILES', False)
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)
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else:
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options.extend([
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self.define(
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'DEAL_II_EXAMPLES_RELDIR', 'share/deal.II/examples'
|
|
),
|
|
self.define('DEAL_II_DOCREADME_RELDIR', 'share/deal.II/'),
|
|
self.define('DEAL_II_DOCHTML_RELDIR', 'share/deal.II/doc')
|
|
])
|
|
|
|
# Required dependencies
|
|
lapack_blas_libs = spec['lapack'].libs + spec['blas'].libs
|
|
lapack_blas_headers = spec['lapack'].headers + spec['blas'].headers
|
|
options.extend([
|
|
self.define('BOOST_DIR', spec['boost'].prefix),
|
|
# CMake's FindBlas/Lapack may pickup system's blas/lapack instead
|
|
# of Spack's. Be more specific to avoid this.
|
|
# Note that both lapack and blas are provided in -DLAPACK_XYZ.
|
|
self.define('LAPACK_FOUND', True),
|
|
self.define(
|
|
'LAPACK_INCLUDE_DIRS',
|
|
';'.join(lapack_blas_headers.directories)
|
|
),
|
|
self.define('LAPACK_LIBRARIES', lapack_blas_libs.joined(';')),
|
|
self.define('UMFPACK_DIR', spec['suite-sparse'].prefix),
|
|
self.define('ZLIB_DIR', spec['zlib'].prefix),
|
|
self.define('DEAL_II_ALLOW_BUNDLED', False)
|
|
])
|
|
|
|
if spec.satisfies('@:8'):
|
|
options.extend([
|
|
# Cmake may still pick up system's bzip2, fix this:
|
|
self.define('BZIP2_FOUND', True),
|
|
self.define(
|
|
'BZIP2_INCLUDE_DIRS', spec['bzip2'].prefix.include
|
|
),
|
|
self.define('BZIP2_LIBRARIES', spec['bzip2'].libs.joined(';'))
|
|
])
|
|
|
|
# Doxygen documentation
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_COMPONENT_DOCUMENTATION', 'doc'
|
|
))
|
|
|
|
# Examples / tutorial programs
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_COMPONENT_EXAMPLES', 'examples'
|
|
))
|
|
|
|
# Enforce the specified C++ standard
|
|
if spec.variants['cxxstd'].value != 'default':
|
|
cxxstd = spec.variants['cxxstd'].value
|
|
cxx_flags.extend(['-std=c++{0}'.format(cxxstd)])
|
|
|
|
# Performance
|
|
# Set recommended flags for maximum (matrix-free) performance, see
|
|
# https://groups.google.com/forum/?fromgroups#!topic/dealii/3Yjy8CBIrgU
|
|
if spec.satisfies('%gcc'):
|
|
cxx_flags_release.extend(['-O3'])
|
|
elif spec.satisfies('%intel'):
|
|
cxx_flags_release.extend(['-O3'])
|
|
elif spec.satisfies('%clang') or spec.satisfies('%apple-clang'):
|
|
cxx_flags_release.extend(['-O3', '-ffp-contract=fast'])
|
|
|
|
# 64 bit indices
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_64BIT_INDICES', 'int64'
|
|
))
|
|
|
|
if (spec.satisfies('^openblas+ilp64') or
|
|
spec.satisfies('^intel-mkl+ilp64') or
|
|
spec.satisfies('^intel-parallel-studio+mkl+ilp64')):
|
|
options.append(
|
|
self.define('LAPACK_WITH_64BIT_BLAS_INDICES', True)
|
|
)
|
|
|
|
# CUDA
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_CUDA', 'cuda'
|
|
))
|
|
if '+cuda' in spec:
|
|
if not spec.satisfies('^cuda@9:'):
|
|
options.append('-DDEAL_II_WITH_CXX14=OFF')
|
|
cuda_arch = spec.variants['cuda_arch'].value
|
|
if cuda_arch != 'none':
|
|
if len(cuda_arch) > 1:
|
|
raise InstallError(
|
|
'deal.II only supports compilation for a single GPU!'
|
|
)
|
|
flags = '-arch=sm_{0}'.format(cuda_arch[0])
|
|
# TODO: there are some compiler errors in dealii
|
|
# with: flags = ' '.join(self.cuda_flags(cuda_arch))
|
|
# Stick with -arch=sm_xy for now.
|
|
options.append(
|
|
self.define('DEAL_II_CUDA_FLAGS', flags)
|
|
)
|
|
|
|
# MPI
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_MPI', 'mpi'
|
|
))
|
|
if '+mpi' in spec:
|
|
options.extend([
|
|
self.define('CMAKE_C_COMPILER', spec['mpi'].mpicc),
|
|
self.define('CMAKE_CXX_COMPILER', spec['mpi'].mpicxx),
|
|
self.define('CMAKE_Fortran_COMPILER', spec['mpi'].mpifc),
|
|
self.define('MPI_C_COMPILER', spec['mpi'].mpicc),
|
|
self.define('MPI_CXX_COMPILER', spec['mpi'].mpicxx),
|
|
self.define('MPI_Fortran_COMPILER', spec['mpi'].mpifc)
|
|
])
|
|
# FIXME: Fix issues with undefined references in MPI. e.g,
|
|
# libmpi.so: undefined reference to `opal_memchecker_base_isaddressable'
|
|
if '^openmpi' in spec:
|
|
options.extend([
|
|
self.define('MPI_CXX_LINK_FLAGS', '-lopen-pal')
|
|
])
|
|
if '+cuda' in spec:
|
|
options.extend([
|
|
self.define('DEAL_II_MPI_WITH_CUDA_SUPPORT',
|
|
spec['mpi'].satisfies('+cuda')),
|
|
self.define('CUDA_HOST_COMPILER', spec['mpi'].mpicxx)
|
|
])
|
|
|
|
# Python bindings
|
|
if spec.satisfies('@8.5.0:'):
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_COMPONENT_PYTHON_BINDINGS', 'python'
|
|
))
|
|
if '+python' in spec:
|
|
python_exe = spec['python'].command.path
|
|
python_library = spec['python'].libs[0]
|
|
python_include = spec['python'].headers.directories[0]
|
|
options.extend([
|
|
self.define('PYTHON_EXECUTABLE', python_exe),
|
|
self.define('PYTHON_INCLUDE_DIR', python_include),
|
|
self.define('PYTHON_LIBRARY', python_library)
|
|
])
|
|
|
|
# Simplex support (no longer experimental)
|
|
if spec.satisfies('@9.3.0:9.4.0'):
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_SIMPLEX_SUPPORT', 'simplex'
|
|
))
|
|
|
|
# Threading
|
|
if spec.satisfies('@9.3.0:'):
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_TBB', 'threads'
|
|
))
|
|
else:
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_THREADS', 'threads'
|
|
))
|
|
if '+threads' in spec:
|
|
if (spec.satisfies('^intel-parallel-studio+tbb')):
|
|
# deal.II/cmake will have hard time picking up TBB from Intel.
|
|
tbb_ver = '.'.join(('%s' % spec['tbb'].version).split('.')[1:])
|
|
options.extend([
|
|
self.define('TBB_FOUND', True),
|
|
self.define('TBB_VERSION', tbb_ver),
|
|
self.define(
|
|
'TBB_INCLUDE_DIRS',
|
|
';'.join(spec['tbb'].headers.directories)
|
|
),
|
|
self.define('TBB_LIBRARIES', spec['tbb'].libs.joined(';'))
|
|
])
|
|
else:
|
|
options.append(
|
|
self.define('TBB_DIR', spec['tbb'].prefix)
|
|
)
|
|
|
|
# Optional dependencies for which library names are the same as CMake
|
|
# variables:
|
|
for library in (
|
|
'gsl', 'hdf5', 'p4est', 'petsc', 'slepc', 'trilinos', 'metis',
|
|
'sundials', 'nanoflann', 'assimp', 'gmsh', 'muparser',
|
|
'symengine', 'ginkgo', 'arborx', 'cgal'): # 'taskflow'):
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_{0}'.format(library.upper()), library
|
|
))
|
|
if ('+' + library) in spec:
|
|
options.append(self.define(
|
|
'{0}_DIR'.format(library.upper()), spec[library].prefix
|
|
))
|
|
|
|
# Optional dependencies that do not fit the above pattern:
|
|
# ADOL-C
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_ADOLC', 'adol-c'
|
|
))
|
|
if '+adol-c' in spec:
|
|
options.append(
|
|
self.define('ADOLC_DIR', spec['adol-c'].prefix)
|
|
)
|
|
|
|
# ARPACK
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_ARPACK', 'arpack'
|
|
))
|
|
if '+arpack' in spec and '+mpi' in spec:
|
|
options.extend([
|
|
self.define('ARPACK_DIR', spec['arpack-ng'].prefix),
|
|
self.define('DEAL_II_ARPACK_WITH_PARPACK', True)
|
|
])
|
|
|
|
# NetCDF
|
|
# since Netcdf is spread among two, need to do it by hand:
|
|
if '+netcdf' in spec and '+mpi' in spec:
|
|
netcdf_libs = spec['netcdf-cxx'].libs + spec['netcdf-c'].libs
|
|
options.extend([
|
|
self.define('NETCDF_FOUND', True),
|
|
self.define('NETCDF_INCLUDE_DIRS', '{0};{1}'.format(
|
|
spec['netcdf-cxx'].prefix.include,
|
|
spec['netcdf-c'].prefix.include
|
|
)),
|
|
self.define('NETCDF_LIBRARIES', netcdf_libs.joined(';'))
|
|
])
|
|
else:
|
|
options.append(
|
|
self.define('DEAL_II_WITH_NETCDF', False)
|
|
)
|
|
|
|
# ScaLAPACK
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_SCALAPACK', 'scalapack'
|
|
))
|
|
if '+scalapack' in spec:
|
|
scalapack_libs = spec['scalapack'].libs
|
|
options.extend([
|
|
self.define('SCALAPACK_FOUND', True),
|
|
self.define(
|
|
'SCALAPACK_INCLUDE_DIRS', spec['scalapack'].prefix.include
|
|
),
|
|
self.define('SCALAPACK_LIBRARIES', scalapack_libs.joined(';'))
|
|
])
|
|
|
|
# Open Cascade
|
|
options.append(self.define_from_variant(
|
|
'DEAL_II_WITH_OPENCASCADE', 'oce'
|
|
))
|
|
if '+oce' in spec:
|
|
options.append(
|
|
self.define('OPENCASCADE_DIR', spec['oce'].prefix)
|
|
)
|
|
|
|
# As a final step, collect CXX flags that may have been
|
|
# added anywhere above:
|
|
if len(cxx_flags_release) > 0 and '+optflags' in spec:
|
|
options.extend([
|
|
self.define(
|
|
'CMAKE_CXX_FLAGS_RELEASE', ' '.join(cxx_flags_release)
|
|
),
|
|
self.define('CMAKE_CXX_FLAGS', ' '.join(cxx_flags))
|
|
])
|
|
|
|
# Add flags for machine vectorization, used when tutorials
|
|
# and user code is built.
|
|
# See https://github.com/dealii/dealii/issues/9164
|
|
options.append(
|
|
self.define('DEAL_II_CXX_FLAGS', os.environ['SPACK_TARGET_ARGS'])
|
|
)
|
|
|
|
return options
|
|
|
|
def setup_run_environment(self, env):
|
|
env.set('DEAL_II_DIR', self.prefix)
|
|
|
|
def setup_build_environment(self, env):
|
|
spec = self.spec
|
|
if '+cuda' in spec and '+mpi' in spec:
|
|
env.set('CUDAHOSTCXX', spec['mpi'].mpicxx)
|