0ce8b9d398
* Make boost composable Currently Boost enables a few components through variants by default, which means that if you want to use only what you need and no more, you have to explicitly disable these variants, leading to concretization errors whenever a second package explicitly needs those components. For instance if package A only needs `+component_a` it might depend on `boost +component_a ~component_b`. And if packge B only needs `+component_b` it might depend on `boost ~component_a +component_b`. If package C now depends on both A and B, this leads to unsatisfiable variants and hence a concretization error. However, if we default to disabling all components, package A can simply depend on `boost +component_a` and package B on `boost +component_b` and package C will concretize to depending on `boost +component_a +component_b`, and whatever you install, you get the bare minimum. * Fix style * Added composable boost dependencies for folly * fixing akantu merge issue * hpctoolkit boost dependencies already defined * Fix Styles * Fixup style once more * Adding isort fix * isort one more time * Fix for package audit issue Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> Co-authored-by: Ryan O'Malley <rd.omalley@comcast.net>
51 lines
1.8 KiB
Python
51 lines
1.8 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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from spack.pkg.builtin.boost import Boost
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class Pbbam(CMakePackage):
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"""The pbbam software package provides components to create, query,
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& edit PacBio BAM files and associated indices.
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These components include a core C++ library,
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bindings for additional languages, and command-line utilities."""
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homepage = "https://github.com/PacificBiosciences/pbbam"
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url = "https://github.com/PacificBiosciences/pbbam/archive/0.18.0.tar.gz"
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version('0.18.0', sha256='45286e5f7deb7ff629e0643c8a416155915aec7b85d54c60b5cdc07f4d7b234a')
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depends_on('zlib')
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depends_on('boost@1.55.0:')
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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depends_on('htslib@1.3.1:')
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depends_on('doxygen+graphviz')
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conflicts('%gcc@:5.2.0')
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def cmake_args(self):
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options = []
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if self.run_tests:
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options.append('-DPacBioBAM_build_tests:BOOL=ON')
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else:
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options.append('-DPacBioBAM_build_tests:BOOL=OFF')
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return options
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def install(self, spec, prefix):
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with working_dir(self.build_directory):
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install_tree('bin', prefix.bin)
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install_tree('lib', prefix.lib)
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install_tree('pbbam', prefix.include.pbbam)
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def setup_dependent_build_environment(self, env, dependent_spec):
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env.set('PacBioBAM_LIBRARIES', self.prefix.lib)
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env.set('PacBioBAM_INCLUDE_DIRS', self.prefix.include)
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