16530f84be
#11528 updated Stage to always store a Package's source in a fixed directory accessible via `Stage.source_path` This left behind a number of packages which were expecting to access the source code via `Stage.path`. This Updates those packages to use `Stage.source_path` instead. This also updates the name of the fixed directory: The original name of the fixed directory was "src", so if an expanded archive created a "src" directory, then users inspecting the directory structure could see paths like "src/src" (which wasn't wrong but could be confusing). Therefore this also updates the name of the fixed directory to "spack-src".
82 lines
2.5 KiB
Python
82 lines
2.5 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Nseg(MakefilePackage):
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"""NSEG - Low complexity sequence identification"""
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homepage = "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/"
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url = "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/nseg.c"
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version('1.0', sha256='afae364fbe51caa1eccb704ed0b954437a3ef48a0cd3bf473f4b61d6fde9617e',
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expand=False)
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resource(
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name='makefile',
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url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/makefile",
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sha256='32937aef6969550ca3c762b5dd61b1520635cc46e773e35e56c5718f75838cee',
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expand=False,
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)
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resource(
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name='genwin.c',
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url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/genwin.c",
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sha256='d392d2db625dc8c90b00f2a86028a3a45d121e15eb403b51c2f9b01692ab10d9',
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expand=False,
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)
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resource(
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name='genwin.h',
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url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/genwin.h",
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sha256='1c701d87bf6200bfa40faa16fe665828a010727ef1aa0e8a1e5823605165fb86',
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expand=False,
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)
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resource(
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name='lnfac.h',
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url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/lnfac.h",
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sha256='5048e4f3dc3a7ea420d4eb4912a661f285634fbb205411b647b1f00c3fe3a0d2',
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expand=False,
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)
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resource(
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name='nmerge.c',
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url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/nmerge.c",
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sha256='c8a4bb4c960acf7fcd7509b635766b618efdab9f09aec36443040759eca3bce3',
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expand=False,
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)
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resource(
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name='runnseg',
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url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/runnseg",
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sha256='2830a5a1c5ea1a879cf3a415dfbb23db7a81e84d41698ddf765f2e1ef42e7c78',
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expand=False,
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)
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build_directory = 'nseg'
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@run_before('build')
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def prepare_source(self):
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# create the build dir
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mkdirp(self.build_directory)
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# move the primary source file in
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copy('nseg.c', join_path(self.build_directory, 'nseg.c'))
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# move all of the single-file resources into the build dir
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for key in self.resources:
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for res in self.resources[key]:
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res_name = res.name
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res_path = join_path(res.fetcher.stage.source_path, res.name)
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copy(res_path, join_path(self.build_directory, res_name))
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def install(self, spec, prefix):
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with working_dir(self.build_directory):
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mkdirp(prefix.bin)
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install('nseg', prefix.bin)
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install('nmerge', prefix.bin)
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