74 lines
2.1 KiB
Python
74 lines
2.1 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class IqTree(CMakePackage):
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"""IQ-TREE Efficient software for phylogenomic inference"""
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homepage = "http://www.iqtree.org"
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git = "https://github.com/iqtree/iqtree2.git"
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url = "https://github.com/Cibiv/IQ-TREE/archive/v1.6.12.tar.gz"
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license("GPL-2.0-or-later")
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version(
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"2.3.2", tag="v2.3.1", commit="2914a2f7aac0a1a3c4fadde42c83e5dee315186d", submodules=True
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)
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version(
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"2.3.1", tag="v2.3.1", commit="2914a2f7aac0a1a3c4fadde42c83e5dee315186d", submodules=True
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)
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version(
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"2.2.2.7",
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tag="v2.2.2.7",
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commit="bd3468c7af6572ea29002dfdba377804f8f56c26",
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submodules=True,
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)
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version(
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"2.1.3", tag="v2.1.3", commit="3d31be9e56b05ffbc5f8488fc8285597b433c99f", submodules=True
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)
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version(
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"2.0.6", tag="v2.0.6", commit="219e88407ac915a209a29808a81084bf0d5f1a84", submodules=True
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)
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version("1.6.12", sha256="9614092de7a157de82c9cc402b19cc8bfa0cb0ffc93b91817875c2b4bb46a284")
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depends_on("c", type="build") # generated
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depends_on("cxx", type="build") # generated
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variant("openmp", default=True, description="Enable OpenMP support.")
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variant("mpi", default=False, description="Enable MPI support.")
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variant("lsd2", default=True, description="Activate Least Squares Dating.")
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maintainers("ilbiondo")
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# Depends on Eigen3 and zlib
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depends_on("boost+container+math+exception")
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depends_on("eigen")
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depends_on("zlib-api")
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depends_on("mpi", when="+mpi")
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def cmake_args(self):
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spec = self.spec
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args = []
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iqflags = []
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if spec.satisfies("+lsd2"):
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args.append("-DUSE_LSD2=ON")
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if spec.satisfies("+openmp"):
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iqflags.append("omp")
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if spec.satisfies("+mpi"):
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iqflags.append("mpi")
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if not iqflags:
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iqflags.append("single")
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args.append("-DIQTREE_FLAGS=" + ",".join(iqflags))
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return args
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