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Justin S 1b24dfb8ba Replace git-based Bioconductor R packages (#12005) 
* Replace git-based Bioconductor R packages

The current collection of bioconductor packages tend to have scattered
dependencies and missing versions. This commit replaces git-based
packages with tool-generated Spack package recipes with correct
dependencies and descriptions in place.

* Fix some broken package names, add periods to title docstrings

* r-clue: new package at 0.3-57

* r-genomeinfodbdata: add 1.2.1

* r-gofuncr: new package at 1.4.0

* r-pfam-db: add 3.8.2

* Add missed package r-genelendatabase

* update r-goseq package

* update r-glimma package

* update r-rots package

* r-org-hs-eg-db: add 3.8.2

* r-vgam: fix incorrect R version

* r-rnaseqmap: new package at 2.42.0

* r-rhdf5lib: new package at 1.6.0

* r-scrime: new package at 1.3.5

* r-delayedmatrixstats: new package at 1.6.0

* r-hdf5array: new package at 1.12.1

* r-biocfilecache: new package at 1.8.0

* r-ctc: add new versions, dependencies

* r-genemeta: new package at 1.56.0

* r-scrime: fix flake8

* r-ensembldb: add missing dependencies

* Added missing dependencies to packages with certain DESCRIPTIONS

* r-mapplots: new package at 1.5.1

* r-beachmat: new package at 2.0.0

* r-beeswarm: new package at 0.2.3

* r-biocneighbors: new package at 1.2.0

* r-biocsingular: new package at 1.0.0

* r-ecp: new package at 3.1.1

* r-enrichplot: new package at 1.4.0

* r-europepmc: new package at 0.3

* r-ggbeeswarm: new package at 0.6.0

* r-ggplotify: new package at 0.0.3

* r-ggraph: new package at 1.0.2

* r-gridgraphics: new package at 0.4-1

* r-rcppannoy: new package at 0.0.12

* r-rcpphnsw: new package at 0.1.0

* r-rsvd: new package at 1.0.1

* r-scater: new package at 1.12.2

* r-singlecellexperiment: new package at 1.6.0

* r-tximport: new package at 1.12.3

* r-upsetr: new package at 1.4.0

* r-vioplot: new package at 0.3.2

* r-readr: add 1.3.1

* r-matrixstats: add 0.54.0

* r-ecp: flake8 fix

* r-biocmanager: new package at 1.30.4

* update bioconductor packages requiring BiocManager, new versions

* r-lambda-r: add 1.2.3

* r-vegan: add 2.5-5

* r-cner, r-rcppannoy, r-reportingtools, r-rsvd: add missing newlines at EOF

* r-chemometrics: flake8 fixes

* r-vgam: flake8 fixes

* CRAN packages: use cloud.r-project.org

* Use DESCRIPTION for R version constraints over bioconductor releases

* Update missed packages ABAData, acde, affydata

* Update remaining missed packages

* bio: Drop 'when' clause from first checksummed versions

* bio: improve package description generation logic

* r-genomeinfodbdata: use explicit sha256 sums

* r-pfam-db: update dependencies, add 3.10.0

* update r-org-hs-eg-db

* r-dirichletmultinomial: re-add gsl

* r-polyclip: new package at 1.10-0

* r-farver: new package at 1.1.0

* r-tweenr: new package at 1.0.1

* r-ggforce: new package at 0.3.1

* r-ggforce: remove redundant dep

* r-ggraph: add missing deps

* r-rcpphnsw: remove redundant depends_on

* r-reportingtools: re-add r-r-utils dep

* r-rhdf5: add gmake dep

* r-rhtslib: add system dependencies

* r-rsamtools: add gmake dep

* r-farver: remove redundant dep

* r-tweenr: remove redundant dep

* r-variantannotation: add gmake dep

* r-rgraphviz: add graphviz dep

* r-vsn: correct r-hexbin constraint

* r-scater: fix obsolete deps

* r-variantannotation: fix gmake dep type

* r-scater: tighten R version constraints

* r-rsamtools: fix gmake dep type

* r-rhtslib: fix gmake dep type

* r-rhtslib: use xz over lzma

* r-rhdf5: fix gmake dep type

* r-farver: replace with newer recipe for 2.0.1

* r-mzr: remove old dependency

* r-reportingtools: remove builtin dependency

* r-mzr: add gmake dep

* r-rhtslib: make system libraries link deps

* r-genomeinfodbdata: fix R version constraints

* r-geoquery: remove old deps from new versions

* r-genomicfeatures: tighten r-rmysql dep

* r-ensembldb: tighten r-annotationhub dep

* r-complexheatmap: fix r-dendextend dep

* r-cner: fix utils dep name

* r-clusterprofiler: fix r-gosemsim version req

* r-biostrings: fix r-iranges version reqs

* r-rhdf5lib: add gmake dep

* r-oligoclasses: fix r-biocinstaller dep range

* r-organismdbi: fix r-biocinstaller dep range

* r-hdf5array: add gmake dep

* r-gtrellis: tighten r-circlize version req

* r-gostats: fix r-graph version req

* r-glimma: fix old dependency ranges

* r-biostrings: syntax fix

* r-organismdbi: syntax fix

* r-dose: fix r-igraph dep

* r-dose: fix r-scales, r-rvcheck deps

* r-affy: fix r-biocinstaller dep

* r-ampliqueso: fix homepage

* r-aneufinder: fix r-biocgenerics dep

* r-beachmat: fix changed deps

* r-biocneighbors: fix old R constraint

* r-biocmanager: rewrite recipe for 1.30.10

* Update var/spack/repos/builtin/packages/r-biocinstaller/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/r-oligoclasses/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-11-27 20:57:15 -06:00
..
abinit
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abyss
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accfft
accfft: fix narrowing error. (#13909)
2019-11-27 10:15:22 -06:00
ace
Ace package. Initial commit (#13211)
2019-10-23 09:31:06 -05:00
ack
ack: Fix install modifying download cache (#13836)
2019-11-24 17:33:49 -06:00
activeharmony
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acts-core
ACTS: added version v0.11.1 (#13910)
2019-11-27 15:18:49 +01:00
adept-utils
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adiak
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adios
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
adios2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
adlbx
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
adol-c
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aegean
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aida
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alan
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albany
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albert
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alglib
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
allpaths-lg
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
alquimia
xsdk@0.5.0 (#13682)
2019-11-14 16:36:51 -06:00
alsa-lib
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aluminum
Updated versions numbers for Aluminum and Hydrogen. (#13814)
2019-11-20 19:04:01 -07:00
amber
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amg
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amg2013
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aml
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amp
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ampliconnoise
ampliconnoise: Change return type of function. (#13766)
2019-11-20 16:03:51 -07:00
amrex
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amrvis
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andi
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angsd
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ant
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antlr
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ants
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aoflagger
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aom
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ape
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aperture-photometry
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apex
…
apple-libunwind
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applewmproto
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appres
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apr
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apr-util
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aragorn
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arborx
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archer
added archer 2.0.0 and package build fixes (#13577)
2019-11-04 17:39:16 -06:00
argobots
update Argobots and BOLT (#13765)
2019-11-20 19:04:46 -07:00
argp-standalone
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argtable
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aria2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
arm-forge
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
armadillo
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
arpack-ng
arpack-ng: Fixed error that is not compatible with isnan. (#13246)
2019-10-21 18:27:39 -05:00
arrow
(py)arrow: new versions (#13561)
2019-11-07 11:52:29 -06:00
asagi
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ascent
update to add ascent 0.5.0 release (#13709)
2019-11-17 12:36:14 -07:00
asciidoc
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asciidoctor
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aspa
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aspcud
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aspect
Add version 2.1.0 to 'aspect' package (#13830)
2019-11-27 20:04:00 -06:00
aspell
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aspell6-de
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aspell6-en
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aspell6-es
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aspera-cli
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assimp
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astra
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astral
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astyle
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at-spi2-atk
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at-spi2-core
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athena
athena, mvapich2, spectrum-mpi: use new API to setup environment (#13677)
2019-11-12 11:44:12 -06:00
atk
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atlas
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atom-dft
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atompaw
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atop
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attr
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augustus
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
autoconf
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autodock-vina
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autofact
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
autogen
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automaded
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automake
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awscli
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axel
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axl
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
bam-readcount
bam-readcount: a new package. (#13628)
2019-11-07 10:00:43 -06:00
bamdst
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bamtools
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bamutil
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barrnap
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bash
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bash-completion
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bats
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bazel
Add latest version of bazel (#13813)
2019-11-25 11:59:12 -06:00
bbcp
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bbmap
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bc
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bcftools
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bcl2fastq2
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bdftopcf
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bdw-gc
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bear
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beast1
Libbeagle fixes (#13463)
2019-10-27 22:24:06 -05:00
beast2
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beast-tracer
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bedops
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bedtools2
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beforelight
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benchmark
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berkeley-db
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bertini
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bib2xhtml
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bigreqsproto
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binutils
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bioawk
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biobloom
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biopieces
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
bismark
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bison
Mark conflicts between newer packages and Intel 14 compilers (#13729)
2019-11-14 16:27:36 -06:00
bitmap
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blasr
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blasr-libcpp
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blast2go
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blast-legacy
blast-legacy: fix build issues (#13370)
2019-10-23 23:16:22 -05:00
blast-plus
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blat
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blaze
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blis
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bliss
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blitz
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blktrace
add new package : blktrace (#13872)
2019-11-26 12:19:01 -06:00
bmake
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bmi
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bml
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bohrium
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bolt
update Argobots and BOLT (#13765)
2019-11-20 19:04:46 -07:00
bookleaf-cpp
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boost
Boost package: Fix iostream autodetect libraries (#12440)
2019-10-22 14:25:03 -07:00
boostmplcartesianproduct
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bowtie
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bowtie2
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boxlib
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bpp-core
bpp-core: Clarify 'isnan' function's namespace. (#13260)
2019-10-21 18:24:10 -05:00
bpp-phyl
bpp-phyl: Clarify namespace of 'isnan' function. (#13386)
2019-10-23 09:36:01 -05:00
bpp-seq
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bpp-suite
bpp-suite: Clarify 'isinf' function's namespace. (#13777)
2019-11-20 15:52:44 -07:00
bracken
bracken: Use correct python command (#13395)
2019-10-23 09:33:09 -05:00
braker
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branson
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breakdancer
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
breseq
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bridger
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brigand
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brotli
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bsseeker2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
bucky
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bumpversion
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busco
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busybox
add new package : busybox@1.31.1 (#13871)
2019-11-26 12:19:16 -06:00
butter
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butterflypack
Update ButterflyPACK and STRUMPACK (#13661)
2019-11-11 12:24:13 -06:00
bwa
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bwtool
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byobu
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bzip2
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c-ares
Add c-ares 1.15.0 (#13809)
2019-11-20 15:20:08 -07:00
c-blosc
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c-blosc2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
c-lime
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cabana
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caffe
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cairo
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cairomm
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caliper
Add Caliper v2.2.0 and v2.1.1 (#13723)
2019-11-13 18:11:09 -06:00
callpath
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camellia
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camx
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candle-benchmarks
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
cantera
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canu
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cap3
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capstone
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cardioid
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casacore
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cask
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casper
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catalyst
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catch2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
cbench
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cblas
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cbtf
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cbtf-argonavis
Update the module files for cbtf-krell and openspeedshop (#13400)
2019-10-28 17:36:12 -05:00
cbtf-argonavis-gui
Update the module files for cbtf-krell and openspeedshop (#13400)
2019-10-28 17:36:12 -05:00
cbtf-krell
cbtf-krell: add rpcsvc-proto and libtirpc dependency. (#13800)
2019-11-21 11:38:09 -07:00
cbtf-lanl
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ccache
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ccfits
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ccs-qcd
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cctools
cctools: fix python related error. (#13802)
2019-11-25 12:57:09 -06:00
cdbfasta
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cdd
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cddlib
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cdecimal
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cdhit
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cdo
new CDO release 1.9.8 (#13674)
2019-11-11 12:52:06 -06:00
ceed
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
cereal
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ceres-solver
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cfitsio
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cgal
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cgdb
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cgm
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cgns
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channelflow
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
chapel
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charliecloud
add charliecloud 0.12 (#13599)
2019-11-05 15:51:02 -06:00
charmpp
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chatterbug
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check
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
chgcentre
chgcentre: a new package. (#13500)
2019-11-02 12:58:57 -05:00
chill
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chlorop
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chombo
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chrpath
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cinch
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circos
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cistem
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citcoms
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cityhash
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clamav
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clamr
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clapack
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clara
Added package for Clara command line parser (#13763)
2019-11-20 00:12:43 -07:00
claw
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cleaveland4
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cleverleaf
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clfft
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clhep
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clingo
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cln
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cloc
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cloog
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cloverleaf
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cloverleaf3d
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clp
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clustal-omega
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
clustalw
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cmake
cmake: add support for xlf and ninja (#13796)
2019-11-26 11:29:25 -05:00
cmocka
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cmor
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
cnmem
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cnpy
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cntk
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cntk1bitsgd
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cnvnator
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codar-cheetah
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codes
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coevp
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cohmm
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coinhsl
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colm
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colordiff
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comd
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commons-lang
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commons-lang3
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commons-logging
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compiz
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compositeproto
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conduit
update to add ascent 0.5.0 release (#13709)
2019-11-17 12:36:14 -07:00
connect-proxy
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constype
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converge
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coreutils
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corset
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cosmomc
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cosp2
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cotter
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cowsay
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cp2k
CP2K: drop json-fortran dependency and add support for the Nvidia V100 (#13468)
2019-10-29 14:08:58 +01:00
cppad
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cppcheck
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cppgsl
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cpprestsdk
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cppunit
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cppzmq
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
cpu-features
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cpuinfo
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cquery
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
cram
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cromwell
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cromwell-womtool
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cryptopp
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cryptsetup
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cscope
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csdp
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ctffind
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cub
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
cube
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cubelib
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cubew
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cuda
cuda: add polymorphic package versions (#13912)
2019-11-27 15:45:07 -06:00
cuda-memtest
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cudnn
cuDNN: add new versions (#13668)
2019-11-11 12:53:26 -06:00
cufflinks
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cups
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curl
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cvs
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cxxopts
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czmq
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
dakota
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daligner
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damageproto
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damaris
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
damselfly
damselfly: Add mpi dependency. (#13694)
2019-11-12 11:58:11 -06:00
darshan-runtime
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darshan-util
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dash
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datamash
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dataspaces
Removed github repository and develop version from dataspaces package as it is no longer present/accessible. (#13740)
2019-11-14 16:20:13 -06:00
dateutils
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davix
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
dbcsr
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
dbus
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dcmtk
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dd4hep
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dealii
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
dealii-parameter-gui
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deconseq-standalone
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dejagnu
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delly2
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denovogear
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dftfe
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dia
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dialign
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dialign-tx
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diamond
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diffsplice
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diffutils
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dimemas
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direnv
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discovar
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discovardenovo
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dislin
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
diy
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dlpack
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dmd
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dmlc-core
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dmtcp
Update DMTCP package to v2.6.0 (#13739)
2019-11-14 16:20:44 -06:00
dmxproto
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docbook-xml
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docbook-xsl
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dos2unix
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dotnet-core-sdk
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
double-conversion
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doxygen
doxygen: added missing dependencies to the package (#10589)
2019-11-21 15:30:31 +01:00
draco
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dri2proto
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dri3proto
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ds
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dsdp
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dsrc
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dtcmp
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dyninst
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dysco
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ea-utils
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easybuild
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ebms
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eccodes
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ecflow
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eclipse-gcj-parser
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ecos
new package: ecos (#13453)
2019-10-27 21:53:38 -05:00
ecp-io-sdk
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ecp-proxy-apps
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ecp-viz-sdk
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ed
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editline
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editres
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eem
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eigen
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elasticsearch
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elemental
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elfutils
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elk
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elmerfem
elmer-fem: add devel branch (#13630)
2019-11-07 15:41:43 -06:00
elpa
elpa: add v 2019.05.002 (#13602)
2019-11-05 12:55:51 -07:00
elsd
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elsdc
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elsi
elsi:add CMAKE Fortran MODDIR FLAG for Fujitsu compiler (#13244)
2019-10-21 18:28:38 -05:00
emacs
Update emacs to version 26.3 (#13469)
2019-10-28 11:46:27 -05:00
ember
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emboss
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enchant
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energyplus
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entrezdirect
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environment-modules
environment-modules: add version 4.4.0 (#13772)
2019-11-18 10:53:06 -07:00
eospac
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eq-r
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
er
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
erfa
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ermod
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erne
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es-shell
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
esmf
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
essl
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ethminer
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ethtool
ethtool: new package at version 4.8 (#13864)
2019-11-23 09:17:49 +01:00
etsf-io
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everytrace
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everytrace-example
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evieext
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exabayes
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examinimd
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exampm
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exasp2
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exchanger
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exiv2
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exmcutils
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
exodusii
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
exonerate
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expat
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expect
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express
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extrae
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exuberant-ctags
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eztrace
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f18
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f90cache
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fabtests
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falcon
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fann
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faodel
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fast-global-file-status
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fasta
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fastjar
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fastmath
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
fastme
…
fastp
…
fastphase
…
fastq-screen
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
fastqc
…
fastqvalidator
…
fasttree
…
fastx-toolkit
…
fenics
…
fermi
…
fermikit
…
fermisciencetools
…
ferret
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ffmpeg
…
fftw
…
fgsl
…
figtree
…
file
Added "file" package and added missing depenency to VIM (#13705)
2019-11-13 18:12:10 -06:00
fimpute
…
find-circ
find-circ: a new package. (#13767)
2019-11-20 16:02:34 -07:00
findutils
…
fio
…
fish
…
fixesproto
…
fl
New package: Fl (#12877)
2019-10-21 12:04:00 -07:00
flac
…
flang
…
flann
…
flash
…
flatbuffers
…
flatcc
…
flecsale
…
flecsi
add more legion version and expose more flecsi options (#13741)
2019-11-18 23:51:41 -07:00
flecsph
…
flex
Add missing dependencies to flex. (#13692)
2019-11-12 12:01:15 -06:00
flibcpp
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
flint
…
flit
…
fltk
…
flux-core
Flux v0.11.1 - v0.11.3 (#13199)
2019-11-04 09:58:40 -06:00
flux-sched
Flux v0.11.1 - v0.11.3 (#13199)
2019-11-04 09:58:40 -06:00
fluxbox
fluxbox: fix the comparison method with zero. (#13642)
2019-11-08 10:45:36 -06:00
fmt
…
foam-extend
…
folly
…
font-util
…
fontcacheproto
…
fontconfig
…
fontsproto
…
fonttosfnt
…
fp16
…
fpc
…
fpocket
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
fqtrim
…
fr-hit
…
freebayes
…
freeglut
…
freeimage
…
freetype
…
freexl
…
fribidi
…
fseq
…
fsl
…
fslsfonts
…
fstobdf
…
fstrack
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ftgl
…
fujitsu-mpi
…
funhpc
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
fyba
…
fzf
…
g4abla
…
g4emlow
…
g4ensdfstate
…
g4ndl
…
g4neutronxs
…
g4photonevaporation
…
g4pii
…
g4radioactivedecay
…
g4realsurface
…
g4saiddata
…
g4tendl
…
gams
…
gapbs
…
gapcloser
…
gapfiller
…
gasnet
…
gatk
…
gaudi
…
gaussian
…
gawk
…
gblocks
…
gcc
Fix gcc recipe for RHEL7. (#13460)
2019-10-28 17:31:23 -05:00
gccmakedep
…
gccxml
…
gconf
…
gcta
…
gdal
Add GDAL 3.0.2 (#13603)
2019-11-05 15:05:36 -06:00
gdb
…
gdbm
…
gdk-pixbuf
…
gdl
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
geant4
…
geant4-data
…
gearshifft
…
gemmlowp
…
genemark-et
…
genomefinisher
…
genometools
…
genrich
genrich: new package at 0.6 (#13791)
2019-11-20 15:47:36 -07:00
geopm
package/geopm: Added versions 1.0.0 and 1.1.0 (#13721)
2019-11-14 12:01:03 -06:00
geos
GEOS: http -> https (#13327)
2019-10-20 14:44:28 -05:00
gettext
…
gflags
…
ghost
…
ghostscript
…
ghostscript-fonts
…
giflib
…
ginkgo
Balay/ginkgo 1.1.0 (#13632)
2019-11-07 18:51:20 -06:00
git
…
git-fat-git
…
git-imerge
…
git-lfs
git-lfs: Add new version (#13356)
2019-10-22 10:45:45 -05:00
gl2ps
…
glew
…
glfmultiples
…
glib
glib: Use correct python command (#13392)
2019-10-23 09:30:46 -05:00
glibmm
…
glimmer
…
glm
…
global
…
globalarrays
…
glog
…
gloo
…
glpk
…
glproto
…
glvis
…
gmake
Added "file" package and added missing depenency to VIM (#13705)
2019-11-13 18:12:10 -06:00
gmap-gsnap
…
gmime
…
gmodel
…
gmp
…
gmsh
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
gmt
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
gmtsar
…
gnat
…
gnome-common
…
gnupg
Add latest version of gnupg (#13349)
2019-10-22 00:42:56 -05:00
gnuplot
…
gnutls
…
go
go: Add 1.13.4 and 1.12.13 (#13609)
2019-11-06 11:36:35 +01:00
go-bootstrap
…
go-md2man
…
gobject-introspection
…
googletest
Add latest version of googletest (#13328)
2019-10-20 14:44:43 -05:00
gotcha
…
gource
…
gperf
…
gperftools
…
gpgme
…
gplates
…
gprolog
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
gpu-burn
New package: gpu-burn (#13108)
2019-10-25 17:14:52 -07:00
grackle
…
gradle
…
grandr
…
graph500
…
graphicsmagick
…
graphlib
…
graphmap
…
graphviz
graphviz: Fix patch URL (#13654)
2019-11-09 12:46:29 -06:00
grass
Add grass 7.8.1 (#13664)
2019-11-09 19:41:29 -06:00
grep
Added "file" package and added missing depenency to VIM (#13705)
2019-11-13 18:12:10 -06:00
grib-api
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
grnboost
…
groff
…
gromacs
Adding final bug-releases for the gromacs-2016 and -2018 and Plumed (#13715)
2019-11-14 12:00:36 -06:00
grpc
grpc: update to 1.24.3 (#13658)
2019-11-09 12:42:34 -06:00
gsl
…
gslib
…
gtkmm
…
gtkorvo-atl
…
gtkorvo-cercs-env
…
gtkorvo-dill
…
gtkorvo-enet
…
gtkplus
…
gtksourceview
…
gts
…
guidance
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
guile
guile package: Handling the threads option. (#13730)
2019-11-16 14:34:38 -07:00
gurobi
…
gzip
Added "file" package and added missing depenency to VIM (#13705)
2019-11-13 18:12:10 -06:00
h5hut
…
h5part
…
h5utils
…
h5z-zfp
…
hacckernels
…
hadoop
…
halc
…
hapcut2
…
hapdip
…
haploview
…
harfbuzz
…
harminv
…
hc
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
hdf
…
hdf5
…
hdf5-blosc
…
heaptrack
…
help2man
…
henson
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
hepmc
…
heppdt
…
hic-pro
…
highfive
…
highwayhash
…
hiop
…
hisat2
…
hisea
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
hmmer
added hmmer v 3.3 (#13793)
2019-11-20 19:04:27 -07:00
homer
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
hoomd-blue
…
hotspot
…
hpccg
…
hpctoolkit
…
hpcviewer
…
hpgmg
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
hpl
…
hpx
add MAX_CPU_COUNT variant to HPX package (#13769)
2019-11-19 12:49:32 -07:00
hpx5
…
hsakmt
…
hstr
…
htop
…
htslib
…
httperf
httperf: added new package (#13875)
2019-11-26 13:38:48 +01:00
httpie
…
hub
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
hugo
…
hunspell
…
hwloc
hwloc: added 'master' version pointing at the HEAD of the master branch (#13731)
2019-11-14 12:06:07 -06:00
hybpiper
…
hydra
…
hydrogen
Updated versions numbers for Aluminum and Hydrogen. (#13814)
2019-11-20 19:04:01 -07:00
hyphy
…
hypre
hypre: add version 2.18.2 (#13527)
2019-10-31 18:35:13 -05:00
i3
…
ibm-java
…
ibmisc
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
iceauth
…
icedtea
…
icet
…
ico
…
icu4c
Mark conflicts between newer packages and Intel 14 compilers (#13729)
2019-11-14 16:27:36 -06:00
id3lib
…
idba
…
iegenlib
…
igraph
…
igvtools
…
ilmbase
…
imagemagick
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
imake
…
imp
…
impute2
…
infernal
…
inputproto
…
intel
Bump intel compiler suite to 2019u5. (#13835)
2019-11-27 10:04:48 -06:00
intel-daal
…
intel-gpu-tools
…
intel-ipp
…
intel-mkl
Bump intel compiler suite to 2019u5. (#13835)
2019-11-27 10:04:48 -06:00
intel-mkl-dnn
Add new version of Intel MKL-DNN (#13669)
2019-11-11 12:52:53 -06:00
intel-mpi
Bump intel compiler suite to 2019u5. (#13835)
2019-11-27 10:04:48 -06:00
intel-parallel-studio
Bump intel compiler suite to 2019u5. (#13835)
2019-11-27 10:04:48 -06:00
intel-pin
…
intel-tbb
Add version check when building intel-tbb with clang (#13893)
2019-11-26 23:15:17 -06:00
intel-xed
…
interproscan
…
intltool
…
ioapi
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ior
…
iozone
…
iperf2
…
iperf3
…
ipopt
ipopt: Add condition for 'aarch64' to Ipopt/config.guess (#13499)
2019-10-31 12:38:23 -05:00
isaac
…
isaac-server
…
isl
…
iso-codes
…
itstool
…
itsx
…
jackcess
…
jags
…
jansson
…
jasper
…
jbigkit
…
jchronoss
…
jdk
Add latest version of bazel (#13813)
2019-11-25 11:59:12 -06:00
jellyfish
…
jemalloc
…
jmol
…
jq
…
json-c
…
json-cwx
…
json-fortran
json-fortran: get unit tests working (#13919)
2019-11-27 13:15:55 -06:00
json-glib
…
jsoncpp
…
jube
…
judy
…
julia
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
k8
…
kahip
…
kaiju
…
kaks-calculator
…
kaldi
…
kallisto
…
karma
…
kbproto
…
kdiff3
…
kealib
…
kentutils
…
kibana
…
kim-api
…
kitty
…
kmergenie
…
kokkos
kokkos: turn host_values into a property (#13518)
2019-10-31 12:46:05 -05:00
kokkos-kernels
…
kraken
…
krb5
…
krims
…
kripke
…
kvasir-mpl
…
kvtree
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ladot
…
laghos
…
lame
…
lammps
Updated LAMMPS package to use gpu and kokkos options. (#13886)
2019-11-25 13:22:31 -06:00
last
…
lastz
…
laszip
…
latte
…
launchmon
…
lazyten
…
lbann
Packages: Add cuDNN versions; update LBANN dependencies (#13412)
2019-10-28 13:24:50 -07:00
lbxproxy
…
lbzip2
…
lcals
…
lcms
…
lcov
added lcov package (#13687)
2019-11-11 15:13:48 -06:00
ldc
…
ldc-bootstrap
…
legion
add more legion version and expose more flecsi options (#13741)
2019-11-18 23:51:41 -07:00
lemon
…
leveldb
…
lftp
…
libaec
…
libaio
…
libapplewm
…
libarchive
…
libassuan
Fix configure arg to libassuan (#13350)
2019-10-22 00:43:29 -05:00
libatomic-ops
…
libbeagle
Libbeagle fixes (#13463)
2019-10-27 22:24:06 -05:00
libbeato
…
libbsd
Fix libbsd on Intel compilers (#13720)
2019-11-14 11:59:46 -06:00
libbson
…
libcanberra
…
libcap
…
libceed
…
libcerf
…
libcint
…
libcircle
…
libconfig
…
libcroco
…
libctl
…
libdivsufsort
…
libdmx
…
libdrm
…
libdwarf
…
libeatmydata
…
libedit
…
libelf
…
libemos
…
libepoxy
…
libev
…
libevent
…
libevpath
…
libfabric
…
libffi
Fixed url. url="https://sourceware.org/pub/libffi/libffi-3.2.1.tar.gz") (#13693)
2019-11-12 11:58:49 -06:00
libffs
…
libfive
…
libflame
…
libfontenc
…
libfs
…
libgcrypt
Add dependency version constraint to libgcrypt (#13351)
2019-10-22 00:43:44 -05:00
libgd
…
libgeotiff
libgeotiff: http -> https (#13330)
2019-10-20 15:51:08 -05:00
libgit2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
libglvnd
…
libgpg-error
…
libgpuarray
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
libgridxc
…
libgtextutils
…
libharu
…
libhio
…
libiberty
…
libibumad
…
libice
…
libiconv
…
libidn2
…
libint
…
libjpeg
…
libjpeg-turbo
…
libkml
…
libksba
Fix configure arg to libksba (#13352)
2019-10-22 00:43:11 -05:00
liblas
liblas: http -> https (#13331)
2019-10-20 15:51:35 -05:00
liblbxutil
…
liblockfile
…
libmad
…
libmatheval
…
libmaxminddb
…
libmesh
…
libmmtf-cpp
Py-pymol package has been updated to the latest version (#13764)
2019-11-26 10:42:39 -06:00
libmng
…
libmo-unpack
…
libmonitor
…
libnbc
…
libnl
…
libnova
…
libnrm
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
libnsl
…
libogg
…
liboldx
…
libpcap
…
libpciaccess
…
libpeas
…
libpfm4
…
libpipeline
…
libplist
…
libpmemobj-cpp
…
libpng
…
libpsl
…
libpthread-stubs
…
libquo
…
librom
…
librsvg
…
libseccomp
…
libsecret
…
libsharp
…
libshm
…
libsigcpp
…
libsigsegv
…
libsm
…
libsodium
…
libspatialindex
…
libspatialite
…
libsplash
…
libssh
…
libssh2
…
libsvm
…
libszip
…
libtasn1
…
libtermkey
…
libtiff
libtiff: http -> https (#13332)
2019-10-20 15:51:23 -05:00
libtirpc
…
libtomlc99
…
libtool
…
libunistring
…
libunwind
…
libusb
…
libusbmuxd
…
libuuid
…
libuv
…
libvdwxc
…
libvorbis
…
libvterm
…
libwebp
…
libwebsockets
…
libwindowswm
…
libx11
…
libxau
…
libxaw
…
libxaw3d
…
libxc
libxc: update URL / new API (#13471)
2019-11-01 11:35:30 -05:00
libxcb
…
libxcomposite
…
libxcursor
…
libxdamage
…
libxdmcp
…
libxevie
…
libxext
…
libxfixes
…
libxfont
…
libxfont2
…
libxfontcache
…
libxft
…
libxi
…
libxinerama
…
libxkbcommon
…
libxkbfile
…
libxkbui
…
libxml2
fix libxml2 url (#13770)
2019-11-18 10:58:16 -07:00
libxmu
…
libxp
…
libxpm
…
libxpresent
…
libxprintapputil
…
libxprintutil
…
libxrandr
…
libxrender
…
libxres
…
libxscrnsaver
…
libxshmfence
…
libxslt
…
libxsmm
LIBXSMM package: add version 1.14 (#13436)
2019-10-25 15:34:54 -07:00
libxstream
…
libxt
…
libxtrap
…
libxtst
…
libxv
…
libxvmc
…
libxxf86dga
…
libxxf86misc
…
libxxf86vm
…
libyaml
Add latest version of libyaml (#13333)
2019-10-20 15:50:48 -05:00
libyogrt
…
libzip
…
libzmq
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
liggghts
…
lighttpd
…
likwid
likwid: added version 5.0.0 (#13858)
2019-11-23 09:21:59 +01:00
linkphase3
…
linux-headers
…
listres
…
lizard
Add Lizard (LZ5) (#13456)
2019-10-27 22:24:27 -05:00
llvm
llvm: fix PythonString::GetString for >=python-3.7 (#13631)
2019-11-07 19:05:16 -06:00
llvm-openmp
…
llvm-openmp-ompt
…
lm-sensors
Improved library access for lm-sensors and implemented use in papi. (#13885)
2019-11-25 15:42:14 -06:00
lmdb
lmdb package: add version 0.9.24 (#13437)
2019-10-25 15:34:13 -07:00
lmod
…
lndir
…
log4cplus
…
log4cxx
…
loki
…
lordec
…
lrslib
…
lrzip
…
lsf
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
lsof
lsof: fix url and checksum (#13801)
2019-11-26 12:10:14 -06:00
ltp
ltp: added new package (#13878)
2019-11-25 14:38:25 +01:00
ltrace
…
lua
…
lua-bitlib
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
lua-lpeg
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
lua-luafilesystem
…
lua-luajit
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
lua-luaposix
…
lua-mpack
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
luit
…
lulesh
…
lumpy-sv
…
lvm2
…
lwgrp
…
lwm2
…
lz4
…
lzma
…
lzo
…
m4
m4: fixed macOS version identification on patch (#13623)
2019-11-07 09:43:59 -06:00
macsio
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
mad-numdiff
…
mafft
…
magics
magics: Use correct python path (#13394)
2019-10-23 09:33:42 -05:00
magma
…
makedepend
…
maker
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
mallocmc
…
man-db
…
manta
…
mapnik
Mapnik: fix runtime error involving py-pycairo and PDF (#13865)
2019-11-25 13:01:14 -06:00
mapserver
mapserver: http -> https (#13334)
2019-10-20 16:31:55 -05:00
maq
…
margo
…
mariadb
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
mariadb-c-client
mariadb-c-client: Add 3.1.4 (#13447)
2019-10-27 21:54:04 -05:00
masa
…
masurca
…
mathematica
Update Mathematica recipe (#13679)
2019-11-26 12:22:31 -06:00
matio
…
matlab
…
maven
…
maverick
…
mawk
…
mbedtls
…
mc
…
mcl
…
mdtest
…
med
…
meep
…
mefit
…
megadock
…
megahit
…
memaxes
…
meme
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
memkind
…
memsurfer
…
meraculous
…
mercurial
…
mercury
…
mesa
…
mesa-glu
…
meshkit
…
meson
…
mesquite
…
metabat
metabat: add versions 2.14 and 2.13 (#13369)
2019-11-26 14:14:11 -06:00
metaphysicl
…
metis
update to add ascent 0.5.0 release (#13709)
2019-11-17 12:36:14 -07:00
mfem
update to add ascent 0.5.0 release (#13709)
2019-11-17 12:36:14 -07:00
mg
Add mg, a gnu-emacs like fork of microemacs (#13812)
2019-11-21 11:40:13 -07:00
mgis
Fix mgis package dependency on boost/numpy (#13717)
2019-11-13 15:35:09 -06:00
microbiomeutil
…
migrate
…
mii
…
minced
…
mindthegap
…
miniaero
…
miniamr
…
miniasm
…
miniconda2
Bump miniconda2 miniconda3 to 4.7.12.1 . (#13897)
2019-11-26 10:52:07 -06:00
miniconda3
Bump miniconda2 miniconda3 to 4.7.12.1 . (#13897)
2019-11-26 10:52:07 -06:00
minife
…
minighost
…
minigmg
…
minimap2
…
minimd
…
miniqmc
…
minisign
…
minismac2d
…
minitri
…
minivite
…
minixyce
…
minizip
…
minuit
…
mira
…
miranda
miranda: a new package. (#13768)
2019-11-20 16:01:41 -07:00
mirdeep2
…
mitofates
…
mitos
…
mixcr
…
mkfontdir
…
mkfontscale
…
mlhka
…
mmg
…
moab
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
modern-wheel
…
mofem-cephas
…
mofem-fracture-module
…
mofem-minimal-surface-equation
…
mofem-users-modules
…
molcas
…
mongo-c-driver
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
mongo-cxx-driver
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
mono
…
montage
…
mosh
…
mothur
Mothur update (#13580)
2019-11-04 19:27:13 -06:00
motif
…
motioncor2
…
mount-point-attributes
…
mozjs
…
mpark-variant
MPark.Variant: Patch NVCC C++14 Build (#13901)
2019-11-26 13:07:02 -07:00
mpc
…
mpdecimal
…
mpe2
…
mpest
…
mpfr
…
mpi-bash
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
mpich
mpich: Add ucx dependency (#13921)
2019-11-27 16:34:46 -06:00
mpifileutils
…
mpilander
…
mpileaks
…
mpip
…
mpir
…
mpix-launch-swift
…
mpt
Fixing Fortran MPI compiler reference in mpt package (#13699)
2019-11-12 11:57:07 -06:00
mrbayes
…
mrnet
…
mrtrix3
…
mscgen
…
msgpack-c
…
mshadow
…
msmc
…
mstk
Variant for enabling tests, versions, cleanup (#13882)
2019-11-26 10:48:34 -06:00
multitail
…
multitime
…
multiverso
…
mummer
…
mumps
mumps: Fix compile commands. (#13497)
2019-10-29 23:08:25 -05:00
munge
…
muparser
…
muscle
…
muse
…
musl
…
muster
…
mutationpp
…
mvapich2
Update MVAPICH2 package for 2.3.2 release (#13236)
2019-11-13 15:18:35 -06:00
mxml
…
mxnet
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
mysql
mysql: Use correct python command (#13393)
2019-10-23 14:15:30 -05:00
nag
…
nalu
…
nalu-wind
…
namd
…
nano
…
nanoflann
…
nanopb
…
nasm
Mark conflicts between newer packages and Intel 14 compilers (#13729)
2019-11-14 16:27:36 -06:00
nauty
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ncbi-magicblast
…
ncbi-rmblastn
…
ncbi-toolkit
…
nccl
…
nccmp
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ncdu
…
ncftp
…
ncl
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
nco
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ncurses
ncurses: don't run strip internally (#13843)
2019-11-23 20:47:59 -07:00
ncview
ncview: Fix dependency check (#13615)
2019-11-06 13:24:33 -06:00
ndiff
…
nek5000
…
nekbone
…
nekcem
…
nektar
…
nektools
…
neovim
…
nest
…
netcdf-c
netcdf: fix headers in v4.7.2 (#13600)
2019-11-05 12:56:02 -07:00
netcdf-cxx
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
netcdf-cxx4
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
netcdf-fortran
netcdf-fortran: Fix parallel builds (#13612)
2019-11-06 11:14:35 -06:00
netgauge
…
netgen
…
netlib-lapack
…
netlib-scalapack
…
netlib-xblas
…
netperf
netperf: added new package (#13876)
2019-11-25 15:12:32 +01:00
nettle
…
neuron
…
nextflow
…
nfft
…
nghttp2
…
nginx
…
ngmlr
…
nim
…
ninja
…
ninja-fortran
…
nix
…
nlohmann-json
nlohmann-json 3.7.2 (#13672)
2019-11-11 11:23:50 +01:00
nlopt
Update nlopt package to add Python bindings to PYTHONPATH (#13688)
2019-11-12 11:46:12 -06:00
nmap
…
nnvm
…
node-js
…
notmuch
…
npb
…
npm
…
npth
Add latest version of npth (#13353)
2019-10-22 09:16:33 -05:00
nrm
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
nseg
…
nspr
…
ntpoly
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
numactl
…
numdiff
…
nut
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
nvptx-tools
…
nwchem
…
nyancat
…
ocaml
ocaml: fix url (#13749)
2019-11-26 12:21:29 -06:00
occa
…
oce
…
oclint
…
oclock
…
octave
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
octave-optim
…
octave-splines
…
octave-struct
…
octopus
…
of-catalyst
…
of-precice
…
omega-h
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ompss
…
ompt-openmp
…
oniguruma
…
ont-albacore
…
opa-psm2
…
opam
…
opari2
…
openbabel
…
openblas
openblas: http -> https (#13335)
2019-10-20 17:06:30 -05:00
opencoarrays
…
opencv
…
openexr
…
openfast
…
openfdtd
…
openfoam
update openfoam versions, sha256 values and download directory (#13653)
2019-11-08 14:46:33 -06:00
openfoam-org
…
openfst
…
opengl
…
openglu
…
openimageio
…
openjdk
…
openjpeg
Add missing zlib dependency to openjpeg (#13336)
2019-10-20 17:06:43 -05:00
openkim-models
…
openldap
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
openmc
…
openmpi
openmpi: add 3.1.5 and 3.0.5 (#13918)
2019-11-27 14:02:05 -06:00
openmx
…
opennurbs
…
openpa
…
openpmd-api
openPMD-api: 0.10.0 (#13750)
2019-11-17 12:35:40 -07:00
openscenegraph
…
openslide
…
openspeedshop
Update the module files for cbtf-krell and openspeedshop (#13400)
2019-10-28 17:36:12 -05:00
openspeedshop-utils
Update the module files for cbtf-krell and openspeedshop (#13400)
2019-10-28 17:36:12 -05:00
openssh
…
openssl
…
openstf
…
opium
…
optional-lite
…
optipng
…
opus
…
orca
…
orfm
…
orthofiller
…
orthofinder
…
orthomcl
…
osmctools
…
osqp
New package: OSQP (#13432)
2019-10-25 15:36:28 -07:00
osu-micro-benchmarks
…
otf
…
otf2
…
p4est
…
p7zip
…
pacbio-daligner
…
pacbio-damasker
…
pacbio-dazz-db
…
pacbio-dextractor
…
packmol
…
pacvim
…
pagit
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
pagmo
…
pal
…
paml
…
panda
…
pandaseq
…
pandoc
…
pango
…
pangomm
…
papi
Improved library access for lm-sensors and implemented use in papi. (#13885)
2019-11-25 15:42:14 -06:00
papyrus
…
paradiseo
…
parallel
…
parallel-netcdf
…
paraver
…
paraview
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
parmetis
…
parmgridgen
…
parquet-cpp
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
parsimonator
…
parsplice
…
partitionfinder
…
pasta
…
patch
…
patchelf
Add latest version of patchelf (#13348)
2019-10-22 00:42:40 -05:00
pathfinder
…
pax-utils
…
pbbam
…
pbmpi
…
pbsuite
…
pcma
…
pcre
…
pcre2
…
pdf2svg
…
pdftk
…
pdsh
…
pdt
…
pegtl
…
pennant
…
percept
…
perl
binary distribution: relocate text files properly in relative binaries (#13578)
2019-11-18 14:13:42 -07:00
perl-acme-damn
…
perl-algorithm-diff
…
perl-alien-build
…
perl-alien-libxml2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-app-cmd
…
perl-array-utils
…
perl-b-hooks-endofscope
…
perl-bioperl
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-bit-vector
…
perl-cairo
…
perl-capture-tiny
…
perl-carp-clan
…
perl-cgi
…
perl-class-data-inheritable
…
perl-class-inspector
…
perl-class-load
…
perl-class-load-xs
…
perl-clone
…
perl-clone-choose
…
perl-compress-raw-bzip2
…
perl-compress-raw-zlib
…
perl-config-general
…
perl-contextual-return
…
perl-cpan-meta-check
…
perl-data-dumper
…
perl-data-optlist
…
perl-data-stag
…
perl-db-file
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-dbd-mysql
…
perl-dbd-pg
…
perl-dbd-sqlite
…
perl-dbi
…
perl-devel-cycle
…
perl-devel-globaldestruction
…
perl-devel-overloadinfo
…
perl-devel-stacktrace
…
perl-devel-symdump
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-digest-md5
…
perl-dist-checkconflicts
…
perl-encode-locale
…
perl-error
…
perl-eval-closure
…
perl-exception-class
…
perl-exporter-tiny
…
perl-extutils-config
…
perl-extutils-depends
…
perl-extutils-helpers
…
perl-extutils-installpaths
…
perl-extutils-makemaker
…
perl-extutils-pkgconfig
…
perl-ffi-checklib
…
perl-file-chdir
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-file-copy-recursive
…
perl-file-homedir
…
perl-file-listing
…
perl-file-pushd
…
perl-file-sharedir-install
…
perl-file-slurp-tiny
…
perl-file-slurper
…
perl-file-which
…
perl-font-ttf
…
perl-forks
…
perl-gd
…
perl-gdgraph
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-gdgraph-histogram
…
perl-gdtextutil
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-graph
…
perl-graph-readwrite
…
perl-hash-merge
…
perl-html-parser
…
perl-html-tagset
…
perl-http-cookies
…
perl-http-daemon
…
perl-http-date
…
perl-http-message
…
perl-http-negotiate
…
perl-inline
…
perl-inline-c
…
perl-io-all
…
perl-io-compress
…
perl-io-html
…
perl-io-prompt
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-io-sessiondata
…
perl-io-socket-ssl
…
perl-io-string
…
perl-io-stringy
…
perl-io-tty
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-ipc-run
…
perl-json
…
perl-libwww-perl
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-libxml-perl
…
perl-list-moreutils
…
perl-list-moreutils-xs
…
perl-log-log4perl
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-logger-simple
…
perl-lwp-mediatypes
…
perl-lwp-protocol-https
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-mailtools
…
perl-math-bezier
…
perl-math-cdf
…
perl-math-cephes
…
perl-math-matrixreal
…
perl-math-round
…
perl-math-vecstat
…
perl-module-build
…
perl-module-build-tiny
…
perl-module-implementation
…
perl-module-runtime
…
perl-module-runtime-conflicts
…
perl-moose
…
perl-mozilla-ca
…
perl-mro-compat
…
perl-namespace-clean
…
perl-net-http
…
perl-net-scp-expect
…
perl-net-ssleay
…
perl-number-format
…
perl-object-insideout
…
perl-package-deprecationmanager
…
perl-package-stash
…
perl-package-stash-xs
…
perl-padwalker
…
perl-parallel-forkmanager
…
perl-params-util
…
perl-params-validate
…
perl-parse-recdescent
…
perl-path-tiny
…
perl-pdf-api2
…
perl-pegex
…
perl-perl4-corelibs
…
perl-perl6-slurp
…
perl-perl-unsafe-signals
…
perl-perl-version
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-perlio-gzip
…
perl-perlio-utf8-strict
…
perl-readonly
…
perl-regexp-common
…
perl-scalar-list-utils
…
perl-scalar-util-numeric
…
perl-set-intervaltree
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-set-intspan
…
perl-set-scalar
…
perl-soap-lite
…
perl-star-fusion
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-statistics-basic
…
perl-statistics-descriptive
…
perl-statistics-pca
…
perl-sub-exporter
…
perl-sub-exporter-progressive
…
perl-sub-identify
…
perl-sub-install
…
perl-sub-name
…
perl-sub-uplevel
…
perl-svg
…
perl-swissknife
…
perl-sys-sigaction
…
perl-task-weaken
…
perl-term-readline-gnu
Polymake: new version and more dependencies (#13399)
2019-11-03 17:44:34 -06:00
perl-termreadkey
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-test-cleannamespaces
…
perl-test-deep
…
perl-test-differences
…
perl-test-exception
…
perl-test-fatal
…
perl-test-memory-cycle
…
perl-test-most
…
perl-test-needs
…
perl-test-requires
…
perl-test-requiresinternet
…
perl-test-warn
…
perl-test-warnings
…
perl-text-csv
…
perl-text-diff
…
perl-text-format
…
perl-text-simpletable
…
perl-text-soundex
…
perl-text-unidecode
…
perl-time-hires
…
perl-time-piece
…
perl-timedate
…
perl-try-tiny
…
perl-uri
…
perl-want
…
perl-www-robotrules
…
perl-xml-dom
…
perl-xml-dom-xpath
…
perl-xml-filter-buffertext
…
perl-xml-libxml
…
perl-xml-libxslt
Polymake: new version and more dependencies (#13399)
2019-11-03 17:44:34 -06:00
perl-xml-namespacesupport
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
perl-xml-parser
…
perl-xml-parser-lite
…
perl-xml-quote
…
perl-xml-regexp
…
perl-xml-sax
…
perl-xml-sax-base
…
perl-xml-sax-writer
…
perl-xml-simple
…
perl-xml-twig
…
perl-xml-writer
…
perl-xml-xpathengine
…
perl-yaml
…
perl-yaml-libyaml
…
petsc
petsc: add version 3.12.2 (#13859)
2019-11-22 20:35:16 -06:00
pexsi
…
pfft
…
pflotran
xsdk@0.5.0 (#13682)
2019-11-14 16:36:51 -06:00
pfunit
…
pgdspider
…
pgi
…
pgmath
Bump up PGMath Library to latest version. More transparent name of the branch, version name equals branch name. (#13511)
2019-10-31 13:00:59 -05:00
phantompeakqualtools
…
phast
…
phasta
…
phist
…
phrap-crossmatch-swat
…
phred
…
phylip
…
phyluce
…
picard
…
picsar
…
picsarlite
…
pidx
…
pigz
…
pilon
…
pindel
…
piranha
…
pism
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
pixman
…
pixz
…
pkg-config
…
pkgconf
…
pktools
…
planck-likelihood
…
plasma
…
platypus
…
plink
…
plplot
…
plumed
Adding final bug-releases for the gromacs-2016 and -2018 and Plumed (#13715)
2019-11-14 12:00:36 -06:00
pmdk
pmdk: fix x86_64 arch check (#13676)
2019-11-11 15:46:44 +01:00
pmgr-collective
…
pmix
…
pmlib
…
pnfft
…
pngquant
…
pngwriter
…
pnmpi
…
poamsa
…
pocl
…
polymake
Polymake: new version and more dependencies (#13399)
2019-11-03 17:44:34 -06:00
poppler
…
poppler-data
…
popt
…
porta
…
portage
portage: fix lapack/blas linkage (#13558)
2019-11-04 16:35:28 -07:00
portcullis
…
postgresql
…
powerapi
…
ppl
Polymake: new version and more dependencies (#13399)
2019-11-03 17:44:34 -06:00
pplacer
…
prank
prank: use Spack compilers and remove x86_64 opts from Makefile (#13877)
2019-11-25 15:14:18 +01:00
precice
precice: enable petsc by default (#13696)
2019-11-12 11:40:37 -06:00
presentproto
…
preseq
…
price
…
primer3
…
prinseq-lite
…
printproto
…
prng
…
probconsrna
…
procps
…
prodigal
…
proj
Add latest version of proj (#13337)
2019-10-20 17:56:37 -05:00
protobuf
Add latest version of protobuf (#13551)
2019-11-02 15:58:46 -05:00
protobuf-c
…
proxymngr
…
prrte
…
pruners-ninja
…
ps-lite
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
psi4
…
pslib
…
psm
…
psmc
…
pstreams
…
pugixml
…
pumi
…
pv
…
pvm
…
pxz
…
py-3to2
…
py-4suite-xml
…
py-abipy
…
py-absl-py
…
py-adios
…
py-advancedhtmlparser
…
py-aenum
…
py-affine
…
py-alabaster
Add missing test dependency to py-alabaster (#13325)
2019-10-20 14:44:14 -05:00
py-alembic
…
py-altgraph
…
py-amqp
py-amqp: added new package (#13848)
2019-11-25 16:26:59 +01:00
py-antlr4-python3-runtime
…
py-apache-libcloud
…
py-apipkg
Add missing dependencies to py-apipkg (#13324)
2019-10-20 13:17:44 -05:00
py-appdirs
…
py-appnope
…
py-apscheduler
…
py-argcomplete
…
py-argparse
py-argparse: remove Python dependency version (#13378)
2019-10-23 10:13:39 -05:00
py-arrow
Fix py-pyarrow recipe (#13914)
2019-11-27 12:21:01 -06:00
py-asdf
…
py-ase
…
py-asn1crypto
…
py-aspy-yaml
new package: py-aspy-yaml (#13591)
2019-11-06 10:55:19 -06:00
py-astor
py-astor: specify py-setuptools versions as build fail with latest version (#13533)
2019-11-04 10:21:59 -06:00
py-astroid
…
py-astropy
Restrict parallel build of py-astropy to Python 3 (#13360)
2019-10-22 09:15:11 -05:00
py-astunparse
…
py-async-generator
…
py-atomicwrites
…
py-atropos
…
py-attrs
…
py-autopep8
…
py-avro
…
py-avro-json-serializer
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-babel
Add latest version of py-babel (#13323)
2019-10-20 13:17:28 -05:00
py-backcall
…
py-backports-abc
…
py-backports-functools-lru-cache
…
py-backports-shutil-get-terminal-size
…
py-backports-ssl-match-hostname
…
py-backports-tempfile
…
py-backports-weakref
…
py-basemap
…
py-bcbio-gff
…
py-beautifulsoup4
…
py-billiard
Add the py-billiard package (#13849)
2019-11-23 14:14:28 +01:00
py-bintrees
…
py-binwalk
…
py-biom-format
…
py-biomine
…
py-biopython
…
py-bitarray
…
py-bitstring
…
py-black
…
py-bleach
…
py-blessed
…
py-blessings
…
py-blinker
…
py-bokeh
…
py-boltons
…
py-boto3
…
py-botocore
…
py-bottleneck
…
py-breakseq2
…
py-breathe
…
py-brian
…
py-brian2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-brotlipy
…
py-bsddb3
…
py-bx-python
…
py-bz2file
…
py-cached-property
py-cached-property: added new package at v 1.5.1 (#13850)
2019-11-23 09:20:24 +01:00
py-cachetools
…
py-cairocffi
…
py-cartopy
Update cartopy version and fix recipe (#13898)
2019-11-27 20:01:05 -06:00
py-cclib
…
py-cdat-lite
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-cdo
…
py-cdsapi
New package: py-cdsapi (#13363)
2019-10-24 13:30:21 -05:00
py-celery
py-celery: added new package (#13851)
2019-11-25 16:28:06 +01:00
py-certifi
…
py-certipy
…
py-cf-units
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-cffi
Add latest version of py-cffi (#13322)
2019-10-21 11:19:48 -05:00
py-cfgv
new package py-cfgv (#13592)
2019-11-05 12:47:52 -06:00
py-cftime
…
py-chai
new package: py-chai (#13567)
2019-11-04 16:41:28 -06:00
py-chardet
Add latest version of py-chardet (#13321)
2019-10-20 11:44:12 -05:00
py-checkm-genome
…
py-cheetah
…
py-cheroot
New package: py-cheroot (#13583)
2019-11-27 14:02:43 -06:00
py-cherrypy
New Package: py-cherrypy (#13587)
2019-11-08 14:41:59 -06:00
py-click
Add latest version of py-click (#13320)
2019-10-20 11:43:56 -05:00
py-click-plugins
…
py-cligj
…
py-clipboard
…
py-cloudpickle
…
py-codecov
Add py-codecov package (#13383)
2019-10-23 09:36:45 -05:00
py-cogent
…
py-colorama
py-colorama: new version 0.4.1 (#13562)
2019-11-04 16:46:29 -06:00
py-coloredlogs
Add the py-coloredlogs package (#13852)
2019-11-25 16:56:34 -06:00
py-colorlog
…
py-colormath
…
py-colorpy
…
py-configobj
…
py-configparser
…
py-contextlib2
…
py-convertdate
new package: py-convertdate (#13573)
2019-11-07 11:51:53 -06:00
py-counter
…
py-cov-core
…
py-coverage
Add latest version of py-coverage (#13319)
2019-10-20 11:21:32 -05:00
py-crispresso
…
py-crossmap
…
py-cryptography
…
py-cssselect
add new package : py-cssselect (#13879)
2019-11-25 14:32:04 +01:00
py-csvkit
…
py-current
…
py-cutadapt
…
py-cvxopt
…
py-cvxpy
new package: py-cvxpy (#13478)
2019-10-28 22:55:08 -05:00
py-cycler
…
py-cython
…
py-dask
…
py-dataclasses
py-dataclasses: new package (#13564)
2019-11-04 16:44:11 -06:00
py-dateparser
new package: py-dateparser (#13574)
2019-11-06 13:18:37 -06:00
py-dbf
…
py-decorator
Add latest version of py-decorator (#13318)
2019-10-20 11:21:46 -05:00
py-deeptools
…
py-deeptoolsintervals
…
py-defusedxml
New package: py-defusedxml (#13419)
2019-10-25 15:40:59 -07:00
py-dendropy
…
py-deprecation
New package py-wradlib with new dependencies (#13459)
2019-11-03 17:38:27 -06:00
py-descartes
…
py-dill
…
py-discover
…
py-dlcpar
…
py-dnaio
…
py-docopt
…
py-docutils
…
py-docutils-stubs
…
py-doxypy
…
py-doxypypy
…
py-dryscrape
…
py-dxchange
…
py-dxfile
…
py-earthengine-api
…
py-easybuild-easyblocks
…
py-easybuild-easyconfigs
…
py-easybuild-framework
…
py-ecdsa
…
py-ecos
new package: py-ecos (#13476)
2019-10-28 20:30:40 -05:00
py-edffile
…
py-editdistance
…
py-elasticsearch
…
py-elephant
…
py-emcee
…
py-empy
…
py-entrypoints
…
py-enum34
py-matplotlib only needs backports when ^python@:2 (#13712)
2019-11-14 16:26:44 -06:00
py-epydoc
…
py-espresso
…
py-espressopp
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-et-xmlfile
…
py-eventlet
…
py-execnet
Add latest version of py-execnet (#13317)
2019-10-20 11:21:59 -05:00
py-exodus-bundler
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-fallocate
…
py-fastaindex
…
py-fastcache
…
py-fasteners
…
py-faststructure
…
py-filelock
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-filemagic
…
py-fiona
…
py-fiscalyear
Add latest version of py-fiscalyear (#13451)
2019-10-26 11:06:37 -05:00
py-flake8
…
py-flake8-import-order
…
py-flake8-polyfill
…
py-flask
Add latest version of py-flask (#13316)
2019-10-20 11:13:55 -05:00
py-flask-compress
…
py-flask-socketio
…
py-flexx
…
py-flye
…
py-fn-py
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-fortranformat
…
py-fparser
…
py-freezegun
…
py-fsspec
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-funcsigs
…
py-functools32
…
py-future
…
py-futures
…
py-fypp
…
py-gast
Add old version of py-gast (#13806)
2019-11-20 15:21:03 -07:00
py-gdbgui
…
py-gdc-client
…
py-gee-asset-manager
…
py-geeadd
…
py-geeup
…
py-genders
…
py-genshi
…
py-gensim
py-gensim: new package at 3.8.0 (#13136)
2019-10-25 16:43:54 -05:00
py-geoalchemy2
…
py-geopandas
…
py-gevent
…
py-git-review
…
py-gnuplot
…
py-goatools
…
py-google-api-core
…
py-google-api-python-client
…
py-google-auth
…
py-google-auth-httplib2
…
py-google-cloud-core
…
py-google-cloud-storage
…
py-google-pasta
Add py-google-pasta package (#13807)
2019-11-20 15:20:47 -07:00
py-google-resumable-media
…
py-googleapis-common-protos
…
py-gpaw
…
py-graphviz
…
py-greenlet
…
py-grequests
…
py-griddataformats
…
py-grpcio
Add new py-grpcio package (#13808)
2019-11-20 15:20:28 -07:00
py-guidata
…
py-guiqwt
…
py-h5glance
…
py-h5py
…
py-hdfs
…
py-hepdata-validator
…
py-hpccm
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-html2text
…
py-html5lib
…
py-htseq
…
py-httpbin
Add latest version of py-httpbin (#13315)
2019-10-20 11:14:17 -05:00
py-httplib2
…
py-humanfriendly
Add the py-humanfriendly package (#13853)
2019-11-23 19:12:03 +01:00
py-humanize
…
py-hypothesis
Add latest version of py-hypothesis (#13314)
2019-10-20 11:14:32 -05:00
py-ics
new package: py-ics (#13576)
2019-11-05 17:03:31 -06:00
py-identify
new package: py-identify (#13593)
2019-11-05 12:46:57 -06:00
py-idna
Add latest version of py-idna (#13313)
2019-10-20 11:14:46 -05:00
py-illumina-utils
…
py-imageio
…
py-imagesize
…
py-iminuit
…
py-importlib
…
py-importlib-metadata
…
py-importlib-resources
Add the py-importlib-resources package (#13854)
2019-11-25 13:00:45 -06:00
py-iniparse
…
py-invoke
…
py-ipaddress
…
py-ipdb
…
py-ipykernel
…
py-ipython
…
py-ipython-genutils
…
py-ipywidgets
…
py-isort
…
py-itsdangerous
Add latest version of py-itsdangerous (#13312)
2019-10-20 11:15:01 -05:00
py-jaraco-functools
New package: py-jaraco-functools (#13581)
2019-11-07 18:52:32 -06:00
py-jdatetime
new package: py-jdatetime (#13569)
2019-11-06 13:25:01 -06:00
py-jdcal
…
py-jedi
…
py-jinja2
Add latest version of py-jinja2 (#13311)
2019-10-20 11:15:16 -05:00
py-jmespath
…
py-joblib
…
py-jplephem
…
py-jprops
…
py-jpype1
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-jsonpatch
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-jsonpointer
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-jsonschema
…
py-junit-xml
…
py-jupyter-client
update py-jupyter-client and new setuptools dependency (#13425)
2019-11-04 19:28:59 -06:00
py-jupyter-console
…
py-jupyter-core
py-jupyter-core add new version and setuptools dependency (#13424)
2019-11-06 13:30:59 -06:00
py-jupyterhub
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-keras
…
py-keras-applications
…
py-keras-preprocessing
…
py-kitchen
…
py-kiwisolver
…
py-kmodes
…
py-kombu
py-kombu: added new package (#13855)
2019-11-25 16:02:03 +01:00
py-lark-parser
…
py-latexcodec
…
py-lazy
…
py-lazy-object-proxy
…
py-lazy-property
…
py-lazyarray
…
py-libconf
…
py-libensemble
…
py-ligo-segments
…
py-line-profiler
Fix py-line-profiler incompatible decorators (#13911)
2019-11-27 15:30:53 +01:00
py-linecache2
py-linecache2: pbr is only a build dependency (#13379)
2019-10-23 09:38:05 -05:00
py-lit
…
py-llvmlite
…
py-lmfit
…
py-localcider
…
py-locket
…
py-lockfile
…
py-logilab-common
…
py-lru-dict
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-lscsoft-glue
…
py-luigi
…
py-lxml
Add latest version of py-lxml (#13310)
2019-10-20 11:15:32 -05:00
py-lzstring
…
py-m2r
…
py-macholib
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-machotools
…
py-macs2
Add latest version of py-macs2 (#13358)
2019-10-22 09:16:07 -05:00
py-maestrowf
…
py-mako
…
py-markdown
…
py-markupsafe
Add latest version of py-markupsafe (#13309)
2019-10-20 11:15:51 -05:00
py-matplotlib
py-matplotlib backend dependencies needed at runtime (#13867)
2019-11-23 21:23:45 -06:00
py-mccabe
…
py-mdanalysis
…
py-mechanize
…
py-memory-profiler
…
py-merlin
…
py-metasv
…
py-methylcode
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-mg-rast-tools
…
py-misopy
…
py-mistune
add new versions to py-mistune (#13887)
2019-11-25 16:55:53 -06:00
py-mlxtend
…
py-mo-pack
…
py-mock
Add latest version of py-mock (#13308)
2019-10-20 11:16:07 -05:00
py-modred
…
py-moltemplate
…
py-monotonic
…
py-monty
…
py-more-itertools
…
py-mpi4py
mpi4py 3.0.3 (#13601)
2019-11-05 15:04:49 -06:00
py-mpld3
…
py-mpmath
…
py-multi-key-dict
…
py-multiprocess
…
py-multiqc
py-matplotlib only needs backports when ^python@:2 (#13712)
2019-11-14 16:26:44 -06:00
py-munch
…
py-mx
…
py-myhdl
…
py-mypy
Add py-mypy package (#13282)
2019-10-20 11:10:22 -05:00
py-mypy-extensions
Add py-mypy-extensions package (#13283)
2019-10-20 11:10:40 -05:00
py-mysql-connector-python
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-mysqlclient
…
py-mysqldb1
…
py-natsort
…
py-nbconvert
update py-nbconvert (#13422)
2019-11-26 12:25:48 -06:00
py-nbformat
py-nbformat package: add version 4.4.0 (#13421)
2019-10-25 15:42:49 -07:00
py-nc-time-axis
…
py-neo
…
py-nestle
…
py-netcdf4
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-netifaces
…
py-networkx
…
py-nodeenv
new package: py-nodeenv (#13594)
2019-11-06 13:16:49 -06:00
py-nose
…
py-nose2
…
py-nose-cov
new package: py-nose-cov (#13571)
2019-11-05 12:57:31 -06:00
py-nosexcover
…
py-notebook
update py-notebook (#13423)
2019-11-05 12:51:00 -06:00
py-numba
…
py-numexpr
…
py-numexpr3
py-numexpr3: fix version (#13781)
2019-11-20 15:49:13 -07:00
py-numpy
py-numpy: added version 1.17.4 (#13670)
2019-11-11 11:26:21 +01:00
py-numpydoc
…
py-oauth2client
…
py-oauthlib
…
py-olefile
…
py-onnx
…
py-ont-fast5-api
…
py-openpmd-validator
…
py-openpyxl
…
py-openslide-python
…
py-opentuner
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-opppy
…
py-ordereddict
…
py-oset
…
py-osqp
new package: py-osqp (#13475)
2019-10-28 20:28:42 -05:00
py-overpy
…
py-owslib
…
py-packaging
…
py-palettable
…
py-pamela
…
py-pandas
…
py-pandocfilters
new package: py-pandocfilters (#13418)
2019-10-27 22:22:25 -05:00
py-paramiko
…
py-parse
Add the py-parse package (#13856)
2019-11-23 09:36:29 +01:00
py-partd
…
py-path-py
…
py-pathlib
…
py-pathlib2
…
py-pathos
…
py-pathspec
…
py-patsy
New package: py-wub, with supporting fixes (#13773)
2019-11-22 20:34:43 -06:00
py-pauvre
…
py-pbr
Add latest version of py-pbr (#13380)
2019-10-23 10:14:04 -05:00
py-pep8-naming
…
py-performance
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-periodictable
…
py-petsc4py
…
py-pexpect
…
py-phonopy
…
py-pickleshare
…
py-picrust
…
py-pil
…
py-pillow
…
py-pint
…
py-pip
Add latest version of py-pip (#13306)
2019-10-20 11:16:36 -05:00
py-pipits
…
py-pispino
…
py-pkgconfig
…
py-pkginfo
Add py-pkginfo package (#13448)
2019-10-25 21:27:29 -05:00
py-planar
…
py-plotly
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-pluggy
…
py-ply
…
py-pmw
…
py-portend
New Package py-portend (#13584)
2019-11-08 14:44:29 -06:00
py-poster
…
py-pox
…
py-ppft
…
py-pre-commit
new package: py-pre-commit (#13570)
2019-11-06 11:01:33 -06:00
py-prettytable
…
py-progress
…
py-progressbar2
…
py-projectq
…
py-prometheus-client
…
py-prompt-toolkit
…
py-protobuf
Add old versions and missing dependencies to py-protobuf (#13811)
2019-11-20 15:19:47 -07:00
py-psutil
Add latest version of py-psutil (#13305)
2019-10-20 11:16:53 -05:00
py-psyclone
…
py-psycopg2
…
py-ptyprocess
…
py-pudb
…
py-py
…
py-py2bit
…
py-py2cairo
…
py-py2neo
…
py-py4j
…
py-py-cpuinfo
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-pyani
…
py-pyarrow
(py)arrow: new versions (#13561)
2019-11-07 11:52:29 -06:00
py-pyasn1
…
py-pyasn1-modules
…
py-pybedtools
…
py-pybigwig
…
py-pybind11
pybind11: correct get_include path (#13605)
2019-11-06 07:15:13 +01:00
py-pybtex
…
py-pybtex-docutils
…
py-pycairo
…
py-pycares
…
py-pycbc
…
py-pychecker
…
py-pycmd
New package: py-wub, with supporting fixes (#13773)
2019-11-22 20:34:43 -06:00
py-pycodestyle
…
py-pycparser
Add latest version of py-pycparser (#13304)
2019-10-20 11:17:11 -05:00
py-pycrypto
…
py-pycuda
…
py-pycurl
…
py-pydatalog
…
py-pydispatcher
…
py-pydot
…
py-pydot2
…
py-pydotplus
…
py-pydv
…
py-pyelftools
…
py-pyepsg
…
py-pyfaidx
…
py-pyfasta
…
py-pyfftw
…
py-pyflakes
…
py-pygdal
…
py-pygdbmi
…
py-pygit2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-pyglet
…
py-pygments
…
py-pygobject
…
py-pygpu
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-pygresql
…
py-pygtk
…
py-pyjwt
…
py-pyke
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-pykml
…
py-pykwalify
…
py-pyliblzma
…
py-pylint
…
py-pymatgen
…
py-pymeeus
new package: py-pymeeus (#13572)
2019-11-06 11:02:19 -06:00
py-pyminifier
…
py-pymol
Py-pymol package has been updated to the latest version (#13764)
2019-11-26 10:42:39 -06:00
py-pymongo
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-pymorph
…
py-pympler
…
py-pymysql
…
py-pynio
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-pynn
…
py-pyodbc
…
py-pyomo
…
py-pyopenssl
…
py-pypar
…
py-pyparsing
…
py-pypeflow
…
py-pyperclip
…
py-pyperf
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
py-pyprof2html
…
py-pyproj
…
py-pyqi
…
py-pyqt4
new package Qscintilla (with python bindings via py-pyqt ) (#12793)
2019-11-14 12:01:49 -06:00
py-pyqt5
new package Qscintilla (with python bindings via py-pyqt ) (#12793)
2019-11-14 12:01:49 -06:00
py-pyrad
…
py-pyrosar
…
py-pysam
…
py-pyscaf
…
py-pyserial
…
py-pyshp
…
py-pyside
py-pyside: fix setup files to support python 3.5. (#13613)
2019-11-07 15:43:49 -06:00
py-pyside2
New Package: py-pyside2 (#13647)
2019-11-09 18:22:30 -06:00
py-pysmartdl
…
py-pysocks
Add latest version of py-pysocks (#13303)
2019-10-20 11:17:27 -05:00
py-pyspark
…
py-pysqlite
…
py-pytailf
…
py-pytest
…
py-pytest-cache
…
py-pytest-cov
Add latest version of py-pytest-cov (#13302)
2019-10-20 11:17:47 -05:00
py-pytest-flake8
…
py-pytest-forked
Add py-pytest-forked package (#13281)
2019-10-20 11:10:04 -05:00
py-pytest-httpbin
Add latest version of py-pytest-httpbin (#13301)
2019-10-20 11:18:04 -05:00
py-pytest-isort
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py-pytest-mock
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2019-10-20 11:18:39 -05:00
py-pytest-runner
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2019-10-20 11:18:55 -05:00
py-pytest-xdist
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2019-10-20 11:19:11 -05:00
py-pythia
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py-python-daemon
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py-python-dateutil
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py-python-editor
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py-python-engineio
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py-python-gitlab
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py-python-htmlgen
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py-python-igraph
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py-python-jenkins
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py-python-mapnik
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2019-11-25 13:01:14 -06:00
py-python-meep
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py-python-oauth2
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py-pytools
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py-pyudev
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py-pyugrid
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py-pyvcf
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py-pyyaml
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py-pyzmq
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2019-11-04 19:38:19 -06:00
py-qtawesome
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py-qtpy
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2019-11-25 16:14:57 +01:00
py-quantities
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py-quast
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py-queryablelist
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py-radical-utils
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py-ranger-fm
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2019-11-12 12:05:18 -06:00
py-rasterio
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py-ratelim
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py-raven
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py-readme-renderer
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2019-10-25 21:26:29 -05:00
py-redis
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py-regex
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2019-11-04 16:45:47 -06:00
py-reportlab
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py-repoze-lru
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py-requests
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2019-10-20 11:19:51 -05:00
py-requests-futures
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py-requests-oauthlib
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py-requests-toolbelt
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py-restview
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py-retrying
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py-rnacocktail
py-rnacocktail: a new package. (#13761)
2019-11-18 14:09:39 -07:00
py-rope
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py-rpy2
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py-rsa
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py-rseqc
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py-rtree
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py-ruamel-yaml
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py-s3transfer
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py-saga-python
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py-scandir
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py-scientificpython
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py-scikit-image
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py-scikit-learn
py-scikit-learn: update OpenMP flag (#13683)
2019-11-11 12:52:30 -06:00
py-scikit-optimize
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py-scipy
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2019-11-23 16:50:02 -06:00
py-scoop
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2019-10-28 20:27:54 -05:00
py-scp
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py-scs
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2019-10-29 13:11:31 -05:00
py-seaborn
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py-selenium
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py-semantic-version
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py-semver
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2019-11-03 17:38:27 -06:00
py-send2trash
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py-setuptools
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py-setuptools-git
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py-setuptools-scm
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py-setuptools-scm-git-archive
scm-git-archive python package (#13915)
2019-11-27 15:43:19 -06:00
py-sfepy
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py-sgp4
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py-sh
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py-shapely
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py-shiboken
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py-simplegeneric
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py-simplejson
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py-singledispatch
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py-sip
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py-six
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py-slepc4py
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py-slurm-pipeline
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py-smart-open
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py-sncosmo
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py-snowballstemmer
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2019-11-23 15:25:24 +01:00
py-snuggs
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py-sortedcontainers
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py-soupsieve
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py-spatialist
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py-spectra
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py-spefile
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py-spglib
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py-sphinx
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2019-10-20 11:20:46 -05:00
py-sphinx-bootstrap-theme
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py-sphinx-rtd-theme
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py-sphinxautomodapi
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2019-10-28 20:27:54 -05:00
py-sphinxcontrib-applehelp
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py-sphinxcontrib-bibtex
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py-sphinxcontrib-devhelp
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py-sphinxcontrib-htmlhelp
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py-sphinxcontrib-jsmath
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py-sphinxcontrib-programoutput
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2019-10-22 09:15:39 -05:00
py-sphinxcontrib-qthelp
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py-sphinxcontrib-serializinghtml
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py-sphinxcontrib-websupport
Add latest version of py-sphinxcontrib-websupport (#13292)
2019-10-20 11:21:03 -05:00
py-spyder
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2019-10-28 20:27:54 -05:00
py-spykeutils
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py-sqlalchemy
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py-statsmodels
New package: py-wub, with supporting fixes (#13773)
2019-11-22 20:34:43 -06:00
py-stevedore
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py-storm
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py-stratify
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py-subprocess32
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py-symengine
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2019-10-28 20:27:54 -05:00
py-symfit
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py-sympy
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py-systemd-python
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py-tables
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2019-11-01 11:37:04 -05:00
py-tabulate
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py-tap-py
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2019-10-28 20:27:54 -05:00
py-tatsu
py-tatsu: new package (#13566)
2019-11-06 13:16:05 -06:00
py-tblib
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py-tempora
new package: py-tempora (#13582)
2019-11-07 18:59:38 -06:00
py-termcolor
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py-terminado
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py-testinfra
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py-testpath
new package py-testpath (#13417)
2019-11-04 19:39:25 -06:00
py-tetoolkit
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py-texttable
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py-theano
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py-tifffile
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py-toml
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py-toolz
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py-torch
Add new version of Intel MKL-DNN (#13669)
2019-11-11 12:52:53 -06:00
py-torchvision
py-torchvision: add 0.4.2 (#13651)
2019-11-08 14:33:46 -06:00
py-tornado
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py-tqdm
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2019-10-25 21:27:12 -05:00
py-traceback2
py-traceback2: fix dependencies (#13381)
2019-10-23 10:13:11 -05:00
py-traitlets
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py-treehash
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py-tuiview
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py-twine
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2019-10-25 21:27:44 -05:00
py-twisted
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py-typed-ast
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py-typesentry
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py-typing
Add latest version of py-typing (#13287)
2019-10-20 13:18:02 -05:00
py-typing-extensions
Add latest version of py-typing-extensions (#13288)
2019-10-20 11:12:27 -05:00
py-tzlocal
py-tzlocal: add new version 2.0.0 (#13565)
2019-11-04 16:43:15 -06:00
py-umalqurra
new package: py-umalqurra (#13568)
2019-11-04 16:40:06 -06:00
py-umi-tools
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py-unicycler
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py-unittest2
py-unittest2: fix dependencies (#13382)
2019-10-23 09:37:03 -05:00
py-unittest2py3k
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py-uritemplate
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py-urllib3
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2019-10-20 11:11:41 -05:00
py-urwid
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py-usgs
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py-uwsgi
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2019-11-07 18:58:47 -06:00
py-vcversioner
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py-vine
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2019-11-23 09:35:07 +01:00
py-virtualenv
Add latest version of py-virtualenv (#13285)
2019-10-20 11:11:23 -05:00
py-virtualenv-clone
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py-virtualenvwrapper
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py-voluptuous
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2019-11-03 18:48:52 -06:00
py-vsc-base
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py-vsc-install
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py-wand
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2019-10-28 20:27:54 -05:00
py-warlock
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py-wcsaxes
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py-wcwidth
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py-weave
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py-webencodings
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py-webkit-server
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py-weblogo
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py-werkzeug
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2019-10-20 11:11:06 -05:00
py-whatshap
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py-widgetsnbextension
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py-wradlib
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py-wrapt
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py-wub
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2019-11-22 20:34:43 -06:00
py-wxpython
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py-xarray
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2019-11-03 17:38:27 -06:00
py-xattr
py-xattr: fix a package that was pointing to a fork (#13685)
2019-11-18 12:09:47 +01:00
py-xdot
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2019-10-28 20:27:54 -05:00
py-xenv
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py-xlrd
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py-xlsxwriter
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py-xmlrunner
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py-xmltodict
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2019-11-03 17:38:27 -06:00
py-xopen
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py-xpyb
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py-xvfbwrapper
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py-yamlreader
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py-yt
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py-zc-buildout
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2019-11-08 14:43:49 -06:00
py-zipp
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py-zope-event
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pythia6
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python
Views: fix python in views when python prefix is under a symlink (#12575)
2019-10-24 16:27:21 -05:00
qbank
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qbox
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qca
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qhull
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qjson
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qmcpack
QMCPACK Update Nov2019 (#13832)
2019-11-27 16:37:51 -06:00
qmd-progress
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qnnpack
Add QNNPACK package (#13549)
2019-11-02 14:39:31 -05:00
qorts
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qscintilla
new package Qscintilla (with python bindings via py-pyqt ) (#12793)
2019-11-14 12:01:49 -06:00
qt
qt: Fix build for newer versions (#13262)
2019-10-21 18:23:03 -05:00
qt-creator
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2019-10-28 20:27:54 -05:00
qtgraph
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qthreads
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quantum-espresso
QE Update Oct 2019 (#13406)
2019-10-27 22:27:55 -05:00
quinoa
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r-triebeard
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r-trimcluster
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r-truncnorm
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r-trust
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r-tseries
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r-tsne
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r-ttr
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r-tweenr
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-tximport
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-ucminf
…
r-udunits2
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
r-units
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
r-upsetr
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-urca
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r-urltools
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r-usethis
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r-utf8
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r-uuid
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r-uwot
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r-variantannotation
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-varselrf
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r-vcd
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r-vctrs
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r-vegan
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r-vfs
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r-vgam
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r-vioplot
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-vipor
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r-viridis
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r-viridislite
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r-visnetwork
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r-vsn
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-webshot
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r-wgcna
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
r-whisker
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r-withr
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r-xde
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-xfun
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r-xgboost
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r-xlconnect
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r-xlconnectjars
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r-xlsx
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
r-xlsxjars
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r-xmapbridge
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-xml
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r-xml2
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r-xnomial
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r-xopen
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r-xtable
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r-xts
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r-xvector
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-yaml
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r-yapsa
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-yaqcaffy
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-yarn
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-zeallot
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r-zip
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r-zlibbioc
Replace git-based Bioconductor R packages (#12005)
2019-11-27 20:57:15 -06:00
r-zoo
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racon
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raft
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ragel
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raja
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randfold
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random123
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randrproto
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range-v3
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rankstr
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
rapidjson
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ravel
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raxml
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ray
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rclone
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rdma-core
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rdp-classifier
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rdptools
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re2c
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readfq
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readline
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recon
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recordproto
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redis
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redset
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
redundans
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regcm
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
relax
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relion
added relion 3.0.8 [latest stable version in 3.0 branch] as well as 3.1_beta (#13539)
2019-11-05 12:40:27 -06:00
rempi
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rename
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rendercheck
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renderproto
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repeatmasker
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repeatmodeler
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
repeatscout
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resourceproto
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revbayes
revbayes: add new versions (#13760)
2019-11-16 00:12:38 -07:00
rgb
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rhash
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rlwrap
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rmats
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rmlab
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rna-seqc
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rnaz
rnaz: new package at 2.1 (#13707)
2019-11-13 15:48:06 -06:00
rngstreams
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rocksdb
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rockstar
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rodinia
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root
Fix ROOT dependencies (for +r variant) (#13839)
2019-11-25 13:02:03 -06:00
rose
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ross
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routino
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rpcsvc-proto
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rr
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rsbench
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rsem
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rstart
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rsync
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rtags
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rtax
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ruby
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ruby-gnuplot
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ruby-narray
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ruby-ronn
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ruby-rubyinline
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ruby-svn2git
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ruby-terminal-table
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rust
…
rust-bindgen
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sabre
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saga-gis
Update package saga gis (#13520)
2019-11-03 17:26:53 -06:00
sailfish
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salmon
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sambamba
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samblaster
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samrai
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samtools
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sandbox
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sas
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satsuma2
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savanna
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saws
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sbt
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scala
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scalasca
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scallop
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scalpel
Update scalpel package.py (#13746)
2019-11-17 12:45:16 -07:00
scan-for-matches
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scons
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scorec-core
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scorep
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scotch
scotch: added version 6.0.8 (#13467)
2019-10-28 15:58:25 +01:00
scr
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screen
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scripts
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scrnsaverproto
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scs
new Package/scs (#13454)
2019-10-28 17:33:32 -05:00
sctk
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sdl2
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sdl2-image
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sdsl-lite
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seacas
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
sed
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sentieon-genomics
sentieon-genomics: add 201808.07 (#13794)
2019-11-20 15:46:22 -07:00
seqan
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seqkit
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seqprep
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seqtk
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serf
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sessreg
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setxkbmap
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sfcgal
new package: sfcgal (#12624)
2019-11-13 15:19:43 -06:00
sga
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shadow
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shapeit
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shared-mime-info
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shiny-server
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shocklibs
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shoremap
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shortbred
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shortstack
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showfont
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shuffile
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
sickle
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siesta
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
signalp
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signify
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silo
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simgrid
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simplemoc
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simul
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simulationio
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
singularity
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singularity-legacy
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sirius
SIRIUS: add new version, add magma support (#13680)
2019-11-11 16:19:40 -06:00
skilion-onedrive
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skopeo
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sl
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slate
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sleef
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slepc
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slurm
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smalt
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smof
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smproxy
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snakemake
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snap
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snap-berkeley
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snap-korf
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snappy
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snbone
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sniffles
sniffles: fix zlib header lookup directory. (#13063)
2019-10-21 18:38:05 -05:00
snpeff
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snphylo
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snptest
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soapdenovo2
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soapdenovo-trans
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sofa-c
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sollve
Updating package for SOLLVE (#12607)
2019-11-26 10:45:27 -06:00
somatic-sniper
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sortmerna
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sosflow
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sowing
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sox
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spades
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span-lite
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spark
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sparsehash
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sparta
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spdlog
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spectrum-mpi
athena, mvapich2, spectrum-mpi: use new API to setup environment (#13677)
2019-11-12 11:44:12 -06:00
speex
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spfft
Add SpFFT: sparse 3D FFT library (#13458)
2019-10-28 22:57:07 -05:00
spglib
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sph2pipe
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spherepack
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spindle
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spm
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spot
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sqlite
sqlite package: add version 3.30.1 (#13438)
2019-10-25 15:33:47 -07:00
sqlitebrowser
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squashfs
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squid
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
sratoolkit
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ssht
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sspace-longread
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sspace-standard
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sst-core
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sst-dumpi
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sst-macro
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stacks
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staden-io-lib
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star
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star-ccm-plus
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startup-notification
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stat
add boost dependency to stat package (#13735)
2019-11-14 16:26:24 -06:00
stata
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stc
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
steps
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stow
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strace
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stream
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strelka
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stress
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string-view-lite
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stringtie
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structure
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strumpack
strumpack: revert default to ~shared [i.e behavior before this variant was added] as +shared fails on multiple builds (#13703)
2019-11-12 20:22:34 -06:00
sublime-text
…
subread
subread: add version 2.0.0 (#13368)
2019-10-23 23:07:11 -05:00
subversion
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
suite-sparse
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sumaclust
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sundials
sundial: add patch for build failure on cori/theta (#13665)
2019-11-12 07:52:05 -06:00
superlu
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superlu-dist
superlu_dist: fix build with xl compilers (#13702)
2019-11-13 15:03:24 -06:00
superlu-mt
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supernova
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sw4lite
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swap-assembler
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swarm
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swfft
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swftools
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swiftsim
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swig
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symengine
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sympol
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sysstat
add new package : sysstat (#13907)
2019-11-26 21:01:04 -06:00
sz
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tabix
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talass
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talloc
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tantan
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tar
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targetp
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task
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taskd
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tasmanian
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tassel
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tau
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tcl
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tcl-itcl
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tcl-tcllib
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tcl-tclxml
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tclap
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tcoffee
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tcptrace
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tcsh
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tealeaf
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tecplot
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templight
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templight-tools
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tensorflow-serving-client
tensorflow-serving-client: add new package (#13771)
2019-11-20 16:01:04 -07:00
tetgen
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tethex
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texinfo
texinfo: fix unescaped braces, and update locale handling (#13815)
2019-11-20 20:54:55 -07:00
texlive
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texstudio
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textparser
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tfel
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the-platinum-searcher
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the-silver-searcher
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thornado-mini
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thrift
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
thrust
…
tig
…
time
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timemory
Timemory (#13503)
2019-11-08 10:35:14 -06:00
tinker
tinker: initial commit (#13869)
2019-11-24 10:31:15 -07:00
tinyxml
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tinyxml2
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tioga
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tippecanoe
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tix
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tk
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tldd
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tmalign
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tmhmm
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tmux
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tmuxinator
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tophat
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tppred
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tracer
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transabyss
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
transdecoder
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transposome
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transset
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trapproto
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tree
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treesub
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trf
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triangle
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trilinos
trilinos: add version 12.18.1 with dtk-3.1 (#13690)
2019-11-12 07:52:24 -06:00
trilinos-catalyst-ioss-adapter
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
trimal
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trimgalore
update to v0.6.4 (#13737)
2019-11-14 16:26:08 -06:00
trimmomatic
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trinity
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
trinotate
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trnascan-se
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turbine
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
turbomole
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tut
Tut cannot be built with Python 3.7+ (#13341)
2019-10-20 19:08:04 -05:00
twm
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tycho2
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typhon
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typhonio
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ucx
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udunits
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
ufo-core
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ufo-filters
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umap
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umoci
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umpire
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unblur
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uncrustify
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unibilium
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unifyfs
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unison
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units
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unittest-cpp
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unixodbc
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unrar
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unuran
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unzip
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upcxx
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uriparser
Use specific version of googletest for uriparser (#13339)
2019-10-20 19:08:23 -05:00
usearch
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utf8proc
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util-linux
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util-macros
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uuid
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uvw
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valgrind
Fix for overlong shebang in valgrind (#13779)
2019-11-20 15:50:14 -07:00
vampirtrace
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vardictjava
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varscan
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vc
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vcftools
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vcsh
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vdt
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vecgeom
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veclibfort
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vegas2
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veloc
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velvet
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verilator
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verrou
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vesta
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videoproto
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viennarna
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viewres
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vigra
…
vim
Added "file" package and added missing depenency to VIM (#13705)
2019-11-13 18:12:10 -06:00
virtualgl
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visit
Fix visit+ (#13652)
2019-11-09 12:47:04 -06:00
vizglow
…
vmatch
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
voropp
…
votca-csg
votca: help concretizer (#13906)
2019-11-26 21:47:42 -06:00
votca-ctp
votca: help concretizer (#13906)
2019-11-26 21:47:42 -06:00
votca-tools
votca-*: add v1.5.1 (#13822)
2019-11-21 16:09:03 -07:00
votca-xtp
votca: help concretizer (#13906)
2019-11-26 21:47:42 -06:00
vpfft
…
vpic
…
vsearch
update vsearch (#13736)
2019-11-14 16:17:02 -06:00
vt
vt: add version 0.5772 (#13367)
2019-10-23 23:05:27 -05:00
vtk
Fix visit+ (#13652)
2019-11-09 12:47:04 -06:00
vtk-h
update to add ascent 0.5.0 release (#13709)
2019-11-17 12:36:14 -07:00
vtk-m
silence vtkm logging until it does not report false positives to std::cerr (#13845)
2019-11-26 12:19:36 -06:00
wannier90
…
warpx
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
watch
…
wcslib
…
wget
…
wgsim
…
which
Added "file" package and added missing depenency to VIM (#13705)
2019-11-13 18:12:10 -06:00
windowswmproto
…
wireshark
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
wordnet
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workrave
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wt
…
wtdbg2
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wxpropgrid
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wxwidgets
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x11perf
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xapian-core
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xauth
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xbacklight
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xbiff
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xbitmaps
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xbraid
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xcalc
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xcb-demo
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xcb-proto
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xcb-util
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xcb-util-cursor
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xcb-util-errors
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xcb-util-image
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xcb-util-keysyms
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xcb-util-renderutil
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xcb-util-wm
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xcb-util-xrm
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xclip
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xclipboard
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xclock
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xcmiscproto
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xcmsdb
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xcompmgr
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xconsole
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xcursor-themes
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xcursorgen
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xdbedizzy
…
xditview
…
xdm
…
xdmf3
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
xdpyinfo
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xdriinfo
…
xedit
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xerces-c
…
xeus
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
xev
…
xextproto
…
xeyes
…
xf86bigfontproto
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xf86dga
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xf86dgaproto
…
xf86driproto
…
xf86miscproto
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xf86rushproto
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xf86vidmodeproto
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xfd
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xfindproxy
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xfontsel
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xfs
…
xfsinfo
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xfwp
…
xgamma
…
xgboost
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xgc
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xhmm
…
xhost
…
xineramaproto
…
xinit
…
xinput
…
xios
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
xkbcomp
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xkbdata
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xkbevd
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xkbprint
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xkbutils
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xkeyboard-config
…
xkill
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xload
…
xlogo
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xlsatoms
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xlsclients
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xlsfonts
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xmag
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xman
…
xmessage
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xmh
…
xmlf90
…
xmlto
…
xmodmap
…
xmore
…
xorg-cf-files
…
xorg-docs
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xorg-gtest
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xorg-server
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xorg-sgml-doctools
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xphelloworld
…
xplor-nih
…
xplsprinters
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xpr
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xprehashprinterlist
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xprop
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xproto
…
xproxymanagementprotocol
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xqilla
…
xrandr
…
xrdb
…
xrefresh
…
xrootd
…
xrx
…
xsbench
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xscope
…
xsd
…
xsdk
xsdk@0.5.0 (#13682)
2019-11-14 16:36:51 -06:00
xsdktrilinos
…
xset
…
xsetmode
…
xsetpointer
…
xsetroot
…
xsimd
…
xsm
…
xssp
…
xstdcmap
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xtensor
…
xtensor-python
…
xterm
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xtl
…
xtrans
…
xtrap
…
xts
…
xvidtune
…
xvinfo
…
xwd
…
xwininfo
…
xwud
…
xxhash
…
xz
…
yajl
…
yambo
Update URL parsing regexes and tests (#13411)
2019-10-28 20:27:54 -05:00
yaml-cpp
…
yara
…
yasm
…
yorick
…
z3
z3: bugfix about python dependency and fallthrough annotation. (#13713)
2019-11-14 16:28:05 -06:00
zfp
…
zip
…
zlib
zlib: use setup_build_environment for build env (#13786)
2019-11-19 12:29:35 -07:00
zoltan
…
zsh
…
zstd
Add latest version of zstd (#13340)
2019-10-21 21:45:48 -05:00