a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
31 lines
1.1 KiB
Python
31 lines
1.1 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Glfmultiples(MakefilePackage):
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"""glfMultiples is a GLF-based variant caller for next-generation
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sequencing data. It takes a set of GLF format genotype likelihood
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files as input and generates a VCF-format set of variant calls
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as output. """
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homepage = "https://genome.sph.umich.edu/wiki/GlfMultiples"
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url = "http://www.sph.umich.edu/csg/abecasis/downloads/generic-glfMultiples-2010-06-16.tar.gz"
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version('2010-06-16', sha256='f7abef6f6b043e9052fb408bb2aae6d0d97d907aedc1b3e02dd0db08eb81b979')
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depends_on('zlib')
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def edit(self, spec, prefix):
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makefile = FileFilter('Makefile')
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makefile.filter('CXX=.*', 'CXX = ' + env['CXX'])
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makefile.filter('CFLAGS=.*',
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'CFLAGS=-O2 -I./libsrc -I./pdf ' +
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'-D_FILE_OFFSET_BITS=64 -D__USE_LONG_INT')
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def install(self, spec, prefix):
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make('INSTALLDIR=%s' % prefix, 'install')
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