a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
41 lines
1.7 KiB
Python
41 lines
1.7 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Plink(Package):
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"""PLINK is a free, open-source whole genome association analysis toolset,
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designed to perform a range of basic, large-scale analyses in a
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computationally efficient manner."""
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homepage = "https://www.cog-genomics.org/plink/1.9/"
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version('1.9-beta6.10', sha256='f8438656996c55a5edd95c223cce96277de6efaab1b9b1d457bfee0c272058d8',
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url='http://s3.amazonaws.com/plink1-assets/plink_linux_x86_64_20190617.zip')
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version('1.9-beta5', sha256='e00ef16ac5abeb6b4c4d77846bd655fafc62669fbebf8cd2e941f07b3111907e',
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url='https://github.com/chrchang/plink-ng/archive/b15c19f.tar.gz')
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version('1.07', sha256='70c52ee47eed854293832639dbabb41c7c036db3a4881c136e6a71ecff4ac7f4',
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url='http://zzz.bwh.harvard.edu/plink/dist/plink-1.07-x86_64.zip',
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preferred=True)
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depends_on('atlas', when='@1.9-beta5')
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depends_on('netlib-lapack', when='@1.9-beta5')
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depends_on('atlas', when='@1.9-beta6.10')
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depends_on('netlib-lapack', when='@1.9-beta6.10')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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if spec.version == Version('1.07'):
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install('plink', prefix.bin)
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install('gPLINK.jar', prefix.bin)
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if spec.version == Version('1.9-beta5'):
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with working_dir('1.9'):
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first_compile = Executable('./plink_first_compile')
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first_compile()
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install('plink', prefix.bin)
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if spec.version == Version('1.9-beta6.10'):
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install('plink', prefix.bin)
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