31 lines
1.4 KiB
Python
31 lines
1.4 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RBiocio(RPackage):
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"""Standard Input and Output for Bioconductor Packages.
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Implements `import()` and `export()` standard generics for importing and
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exporting biological data formats. `import()` supports whole-file as well
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as chunk-wise iterative import. The `import()` interface optionally
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provides a standard mechanism for 'lazy' access via `filter()` (on row or
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element-like components of the file resource), `select()` (on column-like
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components of the file resource) and `collect()`. The `import()` interface
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optionally provides transparent access to remote (e.g. via https) as well
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as local access. Developers can register a file extension, e.g., `.loom`
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for dispatch from character-based URIs to specific `import()` / `export()`
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methods based on classes representing file types, e.g., `LoomFile()`."""
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bioc = "BiocIO"
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version('1.6.0', commit='60c8aa1a961e43bf0ee5d563a6d9fcec84f7f8f8')
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version('1.4.0', commit='c335932526a38c75dbfa4970c1d90b8a21466d37')
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depends_on('r@4.0.0:', type=('build', 'run'))
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-s4vectors', type=('build', 'run'))
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