37 lines
1.7 KiB
Python
37 lines
1.7 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Beast2(Package):
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"""BEAST is a cross-platform program for Bayesian inference using MCMC
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of molecular sequences. It is entirely orientated towards rooted,
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time-measured phylogenies inferred using strict or relaxed molecular
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clock models. It can be used as a method of reconstructing phylogenies
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but is also a framework for testing evolutionary hypotheses without
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conditioning on a single tree topology."""
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homepage = "http://beast2.org/"
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url = "https://github.com/CompEvol/beast2/releases/download/v2.6.4/BEAST.v2.6.4.Linux.tgz"
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version("2.6.7", sha256="05dcc619c2e10163f2c1089ec66149f6e53ec5a0583cd2cb8ffdccbbdb1d8183")
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version("2.6.4", sha256="4f80e2920eb9d87f3e9f64433119774dc67aca390fbd13dd480f852e3f8701a4")
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version("2.6.3", sha256="8899277b0d7124ab04dc512444d45f0f1a13505f3ce641e1f117098be3e2e20d")
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version("2.5.2", sha256="2feb2281b4f7cf8f7de1a62de50f52a8678ed0767fc72f2322e77dde9b8cd45f")
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version("2.4.6", sha256="84029c5680cc22f95bef644824130090f5f12d3d7f48d45cb4efc8e1d6b75e93")
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depends_on("java")
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def setup_run_environment(self, env):
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env.set("BEAST", self.prefix)
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def install(self, spec, prefix):
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install_tree("bin", prefix.bin)
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install_tree("examples", join_path(self.prefix, "examples"))
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install_tree("images", join_path(self.prefix, "images"))
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install_tree("lib", prefix.lib)
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install_tree("templates", join_path(self.prefix, "templates"))
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