31 lines
1.2 KiB
Python
31 lines
1.2 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RPegas(RPackage):
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"""Population and Evolutionary Genetics Analysis System
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Functions for reading, writing, plotting, analysing, and
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manipulating allelic and haplotypic data, including from VCF files,
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and for the analysis of population nucleotide sequences and
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micro-satellites including coalescent analyses, linkage
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disequilibrium, population structure (Fst, Amova) and equilibrium
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(HWE), haplotype networks, minimum spanning tree and network, and
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median-joining networks."""
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homepage = "http://ape-package.ird.fr/pegas.html"
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url = "https://cloud.r-project.org/src/contrib/pegas_0.14.tar.gz"
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list_url = "https://cloud.r-project.org/src/contrib/Archive/pegas"
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maintainers = ['dorton21']
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version('0.14', sha256='7df90e6c4a69e8dbed2b3f68b18f1975182475bf6f86d4159256b52fd5332053')
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depends_on('r@3.2.0:', type=('build', 'run'))
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depends_on('r-ape@5.3-11:', type=('build', 'run'))
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depends_on('r-adegenet', type=('build', 'run'))
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