a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
49 lines
1.9 KiB
Python
49 lines
1.9 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Mrbayes(AutotoolsPackage):
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"""MrBayes is a program for Bayesian inference and model choice across a
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wide range of phylogenetic and evolutionary models. MrBayes uses Markov
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chain Monte Carlo (MCMC) methods to estimate the posterior distribution
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of model parameters."""
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homepage = "http://mrbayes.sourceforge.net"
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url = "https://github.com/NBISweden/MrBayes/releases/download/v3.2.7a/mrbayes-3.2.7a.tar.gz"
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version('3.2.7a', sha256='1a4670be84e6b968d59382328294db4c8ceb73e0c19c702265deec6f2177815c')
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version('3.2.7', sha256='39d9eb269969b501268d5c27f77687c6eaa2c71ccf15c724e6f330fc405f24b9')
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variant('mpi', default=True, description='Enable MPI parallel support')
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variant('beagle', default=True, description='Enable BEAGLE library for speed benefits')
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variant('readline', default=False, description='Enable readline library, not recommended with MPI')
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depends_on('libbeagle', when='+beagle')
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depends_on('mpi', when='+mpi')
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depends_on('readline', when='+readline')
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def configure_args(self):
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args = []
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if '~beagle' in self.spec:
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args.append('--with-beagle=no')
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else:
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args.append('--with-beagle=%s' % self.spec['libbeagle'].prefix)
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if '+readline' in self.spec:
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args.append('--with-readline=yes')
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else:
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args.append('--with-readline=no')
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if '~mpi' in self.spec:
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args.append('--with-mpi=no')
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else:
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args.append('--with-mpi=yes')
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return args
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir('src'):
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install('mb', prefix.bin)
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