bafd84e191
* Switch http to https where latter exists * Hopefully restore original permissions * Add URL updates after include the -L curl option * Manual corrections to select URL format strings
26 lines
1.2 KiB
Python
26 lines
1.2 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RFdbInfiniummethylationHg18(RPackage):
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"""Annotation package for Illumina Infinium DNA methylation probes
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Compiled HumanMethylation27 and HumanMethylation450 annotations"""
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# This is a bioconductor package but there is no available git repository
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homepage = "https://bioconductor.org/packages/release/data/annotation/html/FDb.InfiniumMethylation.hg18.html"
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url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg18_2.2.0.tar.gz"
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version('2.2.0', sha256='4a9028ac03c11fffbab731ea750bc7f9b0884fc43c6a8dac6eb2c644e4c79f6f')
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depends_on('r@2.10:', type=('build', 'run'))
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depends_on('r-genomicfeatures@1.7.22:', type=('build', 'run'))
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depends_on('r-txdb-hsapiens-ucsc-hg18-knowngene', type=('build', 'run'))
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depends_on('r-org-hs-eg-db', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-biostrings', type=('build', 'run'))
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