a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
28 lines
1.1 KiB
Python
28 lines
1.1 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyMisopy(PythonPackage):
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"""MISO (Mixture of Isoforms) is a probabilistic framework that
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quantitates the expression level of alternatively spliced genes from
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RNA-Seq data, and identifies differentially regulated isoforms or exons
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across samples."""
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homepage = "http://miso.readthedocs.io/en/fastmiso/"
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pypi = "misopy/misopy-0.5.4.tar.gz"
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version('0.5.4', sha256='377a28b0c254b1920ffdc2d89cf96c3a21cadf1cf148ee6d6ef7a88ada067dfc')
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depends_on('py-setuptools', type='build')
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depends_on('python@2.6:', type=('build', 'run'))
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depends_on('py-numpy@1.5.0:', type=('build', 'run'))
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depends_on('py-scipy@0.9.0:', type=('build', 'run'))
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depends_on('py-pysam@0.6.0:', type=('build', 'run'))
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depends_on('py-matplotlib', type=('build', 'run'))
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depends_on('samtools')
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depends_on('bedtools2')
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