37 lines
1.6 KiB
Python
37 lines
1.6 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RTmixclust(RPackage):
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"""Time Series Clustering of Gene Expression with Gaussian Mixed-Effects
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Models and Smoothing Splines
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Implementation of a clustering method for time series gene expression
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data based on mixed-effects models with Gaussian variables and non-
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parametric cubic splines estimation. The method can robustly account for
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the high levels of noise present in typical gene expression time series
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datasets."""
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homepage = "https://bioconductor.org/packages/TMixClust"
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git = "https://git.bioconductor.org/packages/TMixClust.git"
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version('1.12.0', commit='982b31bd7e22a3dc638bbda0336546220444f0c2')
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version('1.6.0', commit='9f5f78e52538d15f402c8f6e4c60f7212c7bc548')
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version('1.4.0', commit='a52fcae6e7a5dd41e7afbe128f35397e8bc8cb12')
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version('1.2.0', commit='0250c0b238f08077b5b9ff17c2f3b7633c67dc3c')
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version('1.0.1', commit='0ac800210e3eb9da911767a80fb5582ab33c0cad')
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depends_on('r@3.4:', type=('build', 'run'))
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depends_on('r-gss', type=('build', 'run'))
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depends_on('r-mvtnorm', type=('build', 'run'))
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depends_on('r-zoo', type=('build', 'run'))
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depends_on('r-cluster', type=('build', 'run'))
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depends_on('r-biocparallel', type=('build', 'run'))
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depends_on('r-flexclust', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-spem', type=('build', 'run'))
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