23 lines
894 B
Python
23 lines
894 B
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class RTxdbHsapiensUcscHg19Knowngene(RPackage):
|
|
"""Annotation package for TxDb object(s).
|
|
|
|
Exposes an annotation databases generated from UCSC by exposing these as
|
|
TxDb objects."""
|
|
|
|
# This is a bioconductor package but there is no available git repo.
|
|
bioc = "TxDb.Hsapiens.UCSC.hg19.knownGene"
|
|
url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz"
|
|
|
|
version("3.2.2", sha256="063de2b1174782a0b2b8ab7f04a0bdf3c43252cb67c685a9f8ef2b8e318352e9")
|
|
|
|
depends_on("r-genomicfeatures@1.21.30:", type=("build", "run"))
|
|
depends_on("r-annotationdbi", type=("build", "run"))
|