32 lines
1.0 KiB
Python
32 lines
1.0 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Xhmm(MakefilePackage):
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"""The XHMM C++ software suite was written to
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call copy number variation (CNV) from next-generation
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sequencing projects, where exome capture was used
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(or targeted sequencing, more generally)."""
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homepage = "http://atgu.mgh.harvard.edu/xhmm/index.shtml"
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git = "https://bitbucket.org/statgen/xhmm.git"
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version("20160104", commit="cc14e528d90932f059ac4fe94e869e81221fd732")
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depends_on("lapack")
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def edit(self, spec, prefix):
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filter_file("GCC", "CC", "sources/hmm++/config_rules.Makefile")
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filter_file("GCC =gcc", "", "sources/hmm++/config_defs.Makefile")
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def build(self, spec, prefix):
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make("LAPACK_LIBS=%s" % "".join(spec["lapack"].libs.names))
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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install("xhmm", prefix.bin)
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