b932c14008
* Bump the package API of the `builtin` repo to `v2.0`
* Move `var/spack/repos/builtin` -> `var/spack/repos/spack_repo/builtin`
* Move test repos `var/spack/repos/{builtin.mock,tutorial,...}` -> `var/spack/test_repos/`
* Update package dir names to v2 format (`-` -> `_` etc)
* Change absolute imports `from spack.pkg.builtin.my_pkg ...` to relative imports `from ..my_pkg.package ...`
Users who have a repo on top of builtin should change imports from
```python
from spack.pkg.builtin.my_pkg import MyPkg
```
to
```python
from spack_repo.builtin.packages.my_pkg.package import MyPkg
```
and can configure their editors with
```
PYTHONPATH=$spack/lib/spack:$spack/var/spack/repos
```
[skip-verify-checksums]
53 lines
1.6 KiB
Python
53 lines
1.6 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Eagle(MakefilePackage):
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"""EAGLE: Explicit Alternative Genome Likelihood Evaluator"""
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homepage = "https://github.com/tony-kuo/eagle"
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url = "https://github.com/tony-kuo/eagle/archive/v1.1.2.tar.gz"
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maintainers("snehring")
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license("GPL-3.0-only")
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version("1.1.3", sha256="bd510b8eef2de14898cbf417e1c7a30b97ddaba24e5e2834da7b02767362fe3c")
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version("1.1.2", sha256="afe967560d1f8fdbd0caf4b93b5f2a86830e9e4d399fee4a526140431343045e")
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depends_on("c", type="build") # generated
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depends_on("curl")
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depends_on("zlib-api")
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depends_on("xz")
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depends_on("htslib")
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def edit(self, spec, prefix):
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# remove unused gcc flags
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filter_file("$(LFLAGS) $(INCLUDES)", "", "Makefile", string=True)
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# drop static link to htslib
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filter_file("$(LIBS)", "", "Makefile", string=True)
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# don't try to build htslib.
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filter_file("all: UTIL HTSLIB", "all: UTIL", "Makefile", string=True)
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# add htslib link to ldflags
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filter_file("-lcurl", "-lcurl -lhts", "Makefile", string=True)
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# use spack C compiler
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filter_file("CC=.*", "CC={0}".format(spack_cc), "Makefile")
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# let the user inject march if they want
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filter_file("-march=native", "", "Makefile", string=True)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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bins = ["eagle", "eagle-rc", "eagle-nm"]
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for b in bins:
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install(b, prefix.bin)
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